mRNA_Ecto-sp8_S_contig104879.767.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104879.767.1
Unique NamemRNA_Ecto-sp8_S_contig104879.767.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: D8LSY4_ECTSI (Major facilitator transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY4_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.160e-57
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 294
            +DNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ
Sbjct:   64 KDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 160
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: A0A6H5L781_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L781_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.020e-52
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 294
            +DNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLI GNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ
Sbjct:  604 KDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLITGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 700
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: A0A7S3UWB2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWB2_HETAK)

HSP 1 Score: 126 bits (316), Expect = 6.930e-32
Identity = 62/97 (63.92%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 294
            +DNFGYGESVL+ +F LNG++VG+LQ+  ++ LV  LGKHM+L+ GN  LAAGMVG+A  R P+VHFA+F+VHI+GY++ADTAL +LISRY+SP TQ
Sbjct:  361 KDNFGYGESVLATLFVLNGMSVGMLQVFFIKKLVNKLGKHMLLVLGNALLAAGMVGLALIRQPLVHFAMFSVHILGYAIADTALSSLISRYSSPDTQ 457
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: A0A836CM96_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM96_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.250e-30
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 294
            +DNFGYG + LS +FA+NGV VG LQL+ MRHLV  +GKHM+L +GN+ LA GM+G++  R+  +HF LF+VHI+GYS+ADTALV+LISRYA    Q
Sbjct:   60 KDNFGYGHATLSTLFAVNGVLVGFLQLVLMRHLVAKMGKHMLLASGNLLLALGMLGLSLVRYTPLHFLLFSVHILGYSMADTALVSLISRYAGSNAQ 156
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: K8YQK8_NANGC (Major facilitator superfamily mfs 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQK8_NANGC)

HSP 1 Score: 110 bits (274), Expect = 1.710e-28
Identity = 53/97 (54.64%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 294
            +DNFGYGE+ L  VFALNG+AVG+LQ+  +++L   LGKH+ML  GN+ LA GMVG++  R+ + HF++F++HI+GY+++DTAL +LISRY++P  Q
Sbjct:    4 RDNFGYGETALGAVFALNGIAVGLLQVFLIKNLFARLGKHVMLAFGNLLLALGMVGLSLLRYKLWHFSMFSLHIIGYAISDTALASLISRYSAPEHQ 100
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: A0A4D9D6H6_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6H6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.070e-26
Identity = 53/97 (54.64%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 294
            +DNFGYGE+ L  VFALNG+AVG+LQ+  +++L   LGKH+ML  GN+ LA GMVG++  R+ + HF++F++HI+GY+++DTAL +LISRY++P  Q
Sbjct:  451 KDNFGYGETALGAVFALNGIAVGLLQVFLIKNLFARLGKHVMLAFGNLLLALGMVGLSLLRYKLWHFSMFSLHIIGYAISDTALASLISRYSAPEHQ 547
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: A0A482SL66_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL66_9ARCH)

HSP 1 Score: 105 bits (263), Expect = 1.370e-24
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ 294
            +D+FGYGE  LS +FA+NG  +GV Q+  ++ L+ +LGKH  L  GN  LA GM+GVA  R   +HF LF +H++GYS+ADTAL +LI++Y+SPA Q
Sbjct:  357 KDSFGYGEQALSTLFAVNGFFIGVFQVFLIKPLIHMLGKHATLAFGNFLLALGMIGVALVRERTLHFLLFALHVVGYSIADTALASLITKYSSPANQ 453
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BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Match: A0A7S1UC38_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC38_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-14
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    4 QDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMCLAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRY 276
            ++ FG     LS ++A NG+ VG L +  ++H+VR LG HMML+A N+  + G+  +A  +   +HFA F ++I  +SL D A V+L++ Y
Sbjct:  286 KERFGLASKALSGIYAFNGLLVGCLNVFALKHMVRALGSHMMLVAANVIASVGLASIAMAQQTTLHFASFCLYITAFSLGDVAFVSLLTSY 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104879.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LSY4_ECTSI2.160e-5798.97Major facilitator transporter n=1 Tax=Ectocarpus s... [more]
A0A6H5L781_9PHAE2.020e-5297.94MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UWB2_HETAK6.930e-3263.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CM96_9STRA1.250e-3060.82Major facilitator superfamily domain-containing pr... [more]
K8YQK8_NANGC1.710e-2854.64Major facilitator superfamily mfs 1 n=1 Tax=Nannoc... [more]
A0A4D9D6H6_9STRA5.070e-2654.64MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A482SL66_9ARCH1.370e-2452.58MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A7S1UC38_9STRA1.540e-1438.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104879contigEcto-sp8_S_contig104879:8..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size294
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.1634657-CDS-Ecto-sp8_S_contig104879:7..2141681143147.1634657-CDS-Ecto-sp8_S_contig104879:7..214Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104879 8..214 +
1681143147.174176-CDS-Ecto-sp8_S_contig104879:428..5151681143147.174176-CDS-Ecto-sp8_S_contig104879:428..515Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104879 429..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104879.767.1prot_Ecto-sp8_S_contig104879.767.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104879 8..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104879.767.1

>prot_Ecto-sp8_S_contig104879.767.1 ID=prot_Ecto-sp8_S_contig104879.767.1|Name=mRNA_Ecto-sp8_S_contig104879.767.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=98bp
FQDNFGYGESVLSMVFALNGVAVGVLQLLGMRHLVRLLGKHMMLIAGNMC
LAAGMVGVAFCRHPVVHFALFTVHIMGYSLADTALVALISRYASPATQ
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mRNA from alignment at Ecto-sp8_S_contig104879:8..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104879.767.1 ID=mRNA_Ecto-sp8_S_contig104879.767.1|Name=mRNA_Ecto-sp8_S_contig104879.767.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104879:8..515+ (Ectocarpus species8 EcLAC_412)
TTTCAGGACAATTTTGGTTACGGCGAGTCAGTCCTGTCGATGGTTTTCGC
CCTCAACGGGGTGGCCGTGGGCGTGCTGCAGCTCTTGGGGATGCGGCACT
TGGTGCGGCTTCTGGGGAAGCACATGATGCTCATCGCCGGGAACATGTGC
CTCGCGGCCGGGATGGTGGGGGTCGCCTTCTGCCGCCACCCTGTCGTACA
CTTTGCGGTGAGAGAAAATTCGAGGGAAAGGCCGATTTTTGTTTCTTGCA
AGCCGTACGACTCATTCACGCCATTCCCTTTCCGTTCCCCTTTCCATACA
TACCTTTCCATCCTTCCCTTACCTCTCTTGGCCCCCCTACTGAAGTGTGC
CCGGGCGCTTTCCACACTCAGACTCTTCCCTTCCCCTTCCCTTGCCTTGT
TTTCGCGGCCCGCGTGCACAGCTGTTCACCGTGCACATCATGGGCTACTC
TCTGGCGGACACGGCCCTCGTGGCCCTCATCAGCAGGTACGCCTCGCCCG
CCACGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104879:8..515+

>mRNA_Ecto-sp8_S_contig104879.767.1 ID=mRNA_Ecto-sp8_S_contig104879.767.1|Name=mRNA_Ecto-sp8_S_contig104879.767.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104879:8..515+ (Ectocarpus species8 EcLAC_412)
TTTCAGGACAATTTTGGTTACGGCGAGTCAGTCCTGTCGATGGTTTTCGC
CCTCAACGGGGTGGCCGTGGGCGTGCTGCAGCTCTTGGGGATGCGGCACT
TGGTGCGGCTTCTGGGGAAGCACATGATGCTCATCGCCGGGAACATGTGC
CTCGCGGCCGGGATGGTGGGGGTCGCCTTCTGCCGCCACCCTGTCGTACA
CTTTGCGCTGTTCACCGTGCACATCATGGGCTACTCTCTGGCGGACACGG
CCCTCGTGGCCCTCATCAGCAGGTACGCCTCGCCCGCCACGCAG
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