mRNA_Ecto-sp8_S_contig104868.766.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104868.766.1
Unique NamemRNA_Ecto-sp8_S_contig104868.766.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 4.900e-74
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPEGECNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCC 342
            CNDGIEGIDGNGVVCCPLECGQC G GCT+FGA+FGLG ESCCGGGVK A NYCDVTGEAPCIYGSPPEGEC+GGIEGIDGNGVVCCPLECGQCGG GCSSAGAASGLGS SCC
Sbjct:   48 CNDGIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGSPPEGECSGGIEGIDGNGVVCCPLECGQCGGTGCSSAGAASGLGSESCC 161
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 2.910e-68
Identity = 98/117 (83.76%), Postives = 104/117 (88.89%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPEGECNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCGDG 351
            CNDGIEGIDGNGVVCCP  CGQCGG GCT  GA+FGLG ESCCGGGVK A+NYCDVTG+APCIYGSPPEGECN GIEGIDGNGVVCCPL+CGQCGG+GCS +GA  GLGS SCCG G
Sbjct:   24 CNDGIEGIDGNGVVCCPRHCGQCGGEGCTGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGSPPEGECNNGIEGIDGNGVVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGG 140
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.970e-51
Identity = 84/122 (68.85%), Postives = 91/122 (74.59%), Query Frame = 1 
Query:    4 NDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPEGE--------CNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCG 345
            +DGIEGIDGNGVVCCPL CGQC G GC+  GA  GL   SCCGG +K + NYCD TG APCIYGS PE          C+ GIEGIDGNG VCCPL CGQCGG GC+SAGAA+GL SGSCCG
Sbjct:    4 SDGIEGIDGNGVVCCPLGCGQCVGTGCSTAGAANGLSSGSCCGGEIKDSGNYCDDTGVAPCIYGSAPEDXXXXXXXXTCSDGIEGIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCG 125
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.730e-49
Identity = 87/130 (66.92%), Postives = 94/130 (72.31%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPE-------------GECNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCGDG 351
            C+DGIEGIDGNGVVCCPL CGQC G GC+  GA  GL   SCCGGG+K + NYCD TG APCIYGS P+             G CN GIEGIDGNGVVCCPL CGQC G GCS+AGAA+GL S SCCG G
Sbjct:  535 CSDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDADXXXXXXXXXXVGTCNDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGG 664
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.960e-49
Identity = 81/119 (68.07%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPEG--ECNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCGDG 351
            C++G+EGI+GNGVVCCPLEC QCGG GCT  G+  GLG ESCCGGG+K +  YCD T EAPCI GS P     C+ G+EGIDGNGVVCCPLEC QCGG GC+++G+A+GLGS SCCG G
Sbjct:  472 CSNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSRPTTVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGG 590
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.090e-48
Identity = 79/121 (65.29%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPE------GECNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCG 345
            C++G+EGID NGVVCCPL CGQCGG GC   GA FGL   SCCGGGVK +  YCD T EAPCI GS P         C+ G+EGIDGNGVVCCPL CGQCGG GC+++GAA+GL   SCCG
Sbjct:  193 CSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCG 313
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 7.170e-48
Identity = 86/130 (66.15%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPE-------------GECNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCGDG 351
            C+DGIEGIDGNGVVCCPL CGQC G GC+  GA  GL   SCCGGG+K + NYCD TG APCIYGS P+             G C+ GIEGIDGNGVVCCPL CGQC G GCS AGAA+GL S SCCG G
Sbjct:  470 CSDGIEGIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDTDXXXXXXXXXXIGTCSDGIEGIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGG 599
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 3.380e-47
Identity = 83/136 (61.03%), Postives = 93/136 (68.38%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPE-------------------GECNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCGDG 351
            C+DG EG+DGNGVVCCPL CGQC G GC+  GA  GL   SCCGGG+K + NYCD TG APCIYGS P+                   G C+ GIEG+DGNGVVCCPL CGQC G GCS+AGAA+GL S SCCG G
Sbjct:  270 CSDGTEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGG 405
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BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.570e-44
Identity = 80/129 (62.02%), Postives = 91/129 (70.54%), Query Frame = 1 
Query:    1 CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPEGE------------CNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCCGDG 351
            C+DG EGIDGNGVVCCP+ CGQC G GC   G+  GLG ESCCGGGVK    YCD T EAPCI GS P+ +            C+ G EGIDGNGVVCCP+ CGQC G GC +AG+A+GLGS SCCG+G
Sbjct:  338 CSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNG 466
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 7.420e-40
Identity = 76/128 (59.38%), Postives = 83/128 (64.84%), Query Frame = 1 
Query:    7 DGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVASNYCDVTGEAPCIYGSPPEGE----------------CNGGIEGIDGNGVVCCPLECGQCGGKGCSSAGAASGLGSGSCC 342
            DG EGIDGNGVVCCP+ CGQCGG GC+  G+  GLG ESCCGGGVK    YCD T EAPCI GS P+ +                C+ GIEGID  G VCCPL CGQCGG GC SAG+A  L   SCC
Sbjct:  575 DGTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDDVDSGISEESADDTQTCSNGIEGIDHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCC 702
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104868.766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGP9_9PHAE4.900e-7491.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8L8_ECTSI2.910e-6883.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5M2_9PHAE2.970e-5168.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8H5_9PHAE2.730e-4966.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV4_ECTSI4.960e-4968.07Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JC43_9PHAE2.090e-4865.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT7_9PHAE7.170e-4866.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS5_ECTSI3.380e-4761.03FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7G651_ECTSI1.570e-4462.02Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
A0A6H5JUS5_9PHAE7.420e-4059.38MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104868contigEcto-sp8_S_contig104868:3..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score173.3
Seed ortholog evalue6.6e-41
Seed eggNOG ortholog2880.D7FQV4
Model size354
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
Cds size351
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.1302161-CDS-Ecto-sp8_S_contig104868:2..2101681143147.1302161-CDS-Ecto-sp8_S_contig104868:2..210Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104868 3..210 +
1681143147.1395352-CDS-Ecto-sp8_S_contig104868:372..5151681143147.1395352-CDS-Ecto-sp8_S_contig104868:372..515Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104868 373..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104868.766.1prot_Ecto-sp8_S_contig104868.766.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104868 3..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104868.766.1

>prot_Ecto-sp8_S_contig104868.766.1 ID=prot_Ecto-sp8_S_contig104868.766.1|Name=mRNA_Ecto-sp8_S_contig104868.766.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=117bp
CNDGIEGIDGNGVVCCPLECGQCGGIGCTDFGAEFGLGPESCCGGGVKVA
SNYCDVTGEAPCIYGSPPEGECNGGIEGIDGNGVVCCPLECGQCGGKGCS
SAGAASGLGSGSCCGDG
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mRNA from alignment at Ecto-sp8_S_contig104868:3..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104868.766.1 ID=mRNA_Ecto-sp8_S_contig104868.766.1|Name=mRNA_Ecto-sp8_S_contig104868.766.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=515bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104868:3..517+ (Ectocarpus species8 EcLAC_412)
TGCAACGACGGCATCGAGGGCATCGACGGCAACGGCGTCGTCTGCTGCCC
GCTCGAGTGCGGGCAGTGCGGAGGGATCGGGTGCACCGATTTCGGTGCCG
AGTTTGGTCTCGGTCCCGAGTCCTGCTGCGGCGGAGGGGTCAAGGTTGCC
AGCAACTACTGCGATGTCACCGGCGAAGCCCCGTGCATCTACGGCAGCCC
CCCCGAAGGTGAAAAGAGAACCCCCCCCCCAGTACTTCTGCCGTGCGTTT
CGTAGTGTTTGTTGCCGTAGGTGGGCACAAGGATGACGTCCTGCCGCGCG
TAACCTCGTGTCACAAAAAAACGCAAAGAAGCGCTGTTGACGACGGTACG
TACACGCACGCACACAACAGGTGAGTGCAACGGCGGCATCGAGGGCATCG
ACGGCAACGGTGTCGTCTGCTGCCCGCTCGAGTGCGGGCAGTGCGGAGGG
AAGGGTTGCTCCTCGGCTGGCGCAGCGTCCGGCCTTGGTTCCGGGTCCTG
CTGCGGAGACGGCGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104868:3..517+

>mRNA_Ecto-sp8_S_contig104868.766.1 ID=mRNA_Ecto-sp8_S_contig104868.766.1|Name=mRNA_Ecto-sp8_S_contig104868.766.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104868:3..517+ (Ectocarpus species8 EcLAC_412)
TGCAACGACGGCATCGAGGGCATCGACGGCAACGGCGTCGTCTGCTGCCC
GCTCGAGTGCGGGCAGTGCGGAGGGATCGGGTGCACCGATTTCGGTGCCG
AGTTTGGTCTCGGTCCCGAGTCCTGCTGCGGCGGAGGGGTCAAGGTTGCC
AGCAACTACTGCGATGTCACCGGCGAAGCCCCGTGCATCTACGGCAGCCC
CCCCGAAGGTGAGTGCAACGGCGGCATCGAGGGCATCGACGGCAACGGTG
TCGTCTGCTGCCCGCTCGAGTGCGGGCAGTGCGGAGGGAAGGGTTGCTCC
TCGGCTGGCGCAGCGTCCGGCCTTGGTTCCGGGTCCTGCTGCGGAGACGG
C
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