mRNA_Ecto-sp8_S_contig104825.763.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104825.763.1
Unique NamemRNA_Ecto-sp8_S_contig104825.763.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: D7FN88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.930e-27
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    1 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSA LFYLFEK
Sbjct: 1050 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSAFLFYLFEK 1108          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A7S1GZ91_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1GZ91_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.290e-15
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            A +FR+    R+LQLE F++AFS LD+V+ ASKD + ATGLLAL++WVG   LFYLFE+
Sbjct:   31 AMIFRIFXXXRMLQLEDFITAFSKLDNVFRASKDVMKATGLLALIIWVGCGALFYLFEE 89          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: R1ESQ2_EMIHU (Ion_trans domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESQ2_EMIHU)

HSP 1 Score: 73.6 bits (179), Expect = 5.010e-15
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            A+VFR+ R   +LQLE F++AF+LLD+V  AS D L ATGL+AL++WVG A LF+LFE+
Sbjct:   87 AAVFRIFRXXXVLQLERFLTAFTLLDNVLRASADVLVATGLMALIIWVGGAALFFLFEQ 145          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A836CDK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.510e-15
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            A  FR+LRLFR+LQLE  V+AF+LLDDVW  +K  L A GLLA +VWVGSA LF+L E+
Sbjct: 1058 AGPFRILRLFRLLQLERHVNAFTLLDDVWRGAKGVLKAAGLLAFIVWVGSATLFFLTEQ 1116          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A7S1GK10_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GK10_CYCTE)

HSP 1 Score: 75.9 bits (185), Expect = 1.210e-14
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            A +FRV R+FR+LQLE F+ AFS LD+V+ AS D L ATGLLALV+WVG   LFY+FE+
Sbjct:  536 AMMFRVFRIFRLLQLEGFIVAFSKLDNVFRASMDVLKATGLLALVIWVGCGSLFYIFEQ 594          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A7S0XQ15_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQ15_HEMAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.800e-14
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    4 SVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            +  RVLRLFRILQLEHF  AF+L+DDV+   KDTL AT  LA+++WVG+A  F++ EK
Sbjct:   68 AAIRVLRLFRILQLEHFTEAFTLIDDVFRQCKDTLVATSFLAVIIWVGAAYAFFVTEK 125          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A7S2CE06_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CE06_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.090e-14
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            A+VFR++RLFRILQLE    AF+LLD+V+ AS   L ATGL+AL+VW+  ACLF++FE+
Sbjct:  615 AAVFRIVRLFRILQLERLSPAFTLLDNVFRASAGVLKATGLVALIVWLAGACLFFIFER 673          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A7S0YVY9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YVY9_9CRYP)

HSP 1 Score: 70.5 bits (171), Expect = 6.130e-14
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   13 RVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            RVLRL RILQLEHF  AF+L+DDV+   KDTL AT  LA+++WVG+A  F+L E+
Sbjct:   13 RVLRLLRILQLEHFTEAFTLIDDVFRQCKDTLVATSFLAVIIWVGAAYAFFLTER 67          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A7S1DR60_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DR60_HEMAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.060e-13
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    4 SVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            +  RVLRLFRILQLEHF  AF+L+DDV+   KDTL AT  LA+++WVG+A  F++ EK
Sbjct:  364 AAIRVLRLFRILQLEHFTEAFTLIDDVFRQCKDTLVATSFLAVIIWVGAAYAFFVTEK 421          
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Match: A0A7S4ESS3_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ESS3_CHRCT)

HSP 1 Score: 72.8 bits (177), Expect = 1.380e-13
Identity = 35/59 (59.32%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    1 ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSACLFYLFEK 177
            A+VFR++R+ RIL LE FV+AF++LD+V+ AS++ LAATGL+A ++WVGSA   +LFEK
Sbjct:  305 ATVFRIVRVVRILSLERFVTAFTVLDNVFRASQEMLAATGLMAALIWVGSATCLFLFEK 363          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104825.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN88_ECTSI5.930e-2798.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1GZ91_9STRA4.290e-1559.32Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
R1ESQ2_EMIHU5.010e-1559.32Ion_trans domain-containing protein n=1 Tax=Emilia... [more]
A0A836CDK7_9STRA6.510e-1564.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1GK10_CYCTE1.210e-1464.41Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0XQ15_HEMAN1.800e-1460.34Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2CE06_9EUKA3.090e-1461.02Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0YVY9_9CRYP6.130e-1461.82Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1DR60_HEMAN1.060e-1360.34Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S4ESS3_CHRCT1.380e-1359.32Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104825contigEcto-sp8_S_contig104825:231..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score109.4
Seed ortholog evalue5.9e-22
Seed eggNOG ortholog2880.D7FN88
Model size177
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsCOG2126@1,KOG1419@2759,KOG3713@2759
Cds size177
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143146.9546828-CDS-Ecto-sp8_S_contig104825:230..4071681143146.9546828-CDS-Ecto-sp8_S_contig104825:230..407Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104825 231..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104825.763.1prot_Ecto-sp8_S_contig104825.763.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104825 231..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104825.763.1

>prot_Ecto-sp8_S_contig104825.763.1 ID=prot_Ecto-sp8_S_contig104825.763.1|Name=mRNA_Ecto-sp8_S_contig104825.763.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=59bp
ASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGS
ACLFYLFEK
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mRNA from alignment at Ecto-sp8_S_contig104825:231..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104825.763.1 ID=mRNA_Ecto-sp8_S_contig104825.763.1|Name=mRNA_Ecto-sp8_S_contig104825.763.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104825:231..407- (Ectocarpus species8 EcLAC_412)
GCCTCGGTCTTCCGGGTGCTCAGGCTCTTCCGGATCCTTCAGCTGGAGCA CTTCGTGTCGGCCTTCTCCCTCCTCGACGACGTGTGGACGGCGTCTAAGG ACACGCTGGCGGCCACGGGGCTGCTGGCCCTGGTGGTGTGGGTGGGCAGC GCCTGCCTCTTTTACCTCTTCGAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104825:231..407-

>mRNA_Ecto-sp8_S_contig104825.763.1 ID=mRNA_Ecto-sp8_S_contig104825.763.1|Name=mRNA_Ecto-sp8_S_contig104825.763.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104825:231..407- (Ectocarpus species8 EcLAC_412)
GCCTCGGTCTTCCGGGTGCTCAGGCTCTTCCGGATCCTTCAGCTGGAGCA
CTTCGTGTCGGCCTTCTCCCTCCTCGACGACGTGTGGACGGCGTCTAAGG
ACACGCTGGCGGCCACGGGGCTGCTGGCCCTGGTGGTGTGGGTGGGCAGC
GCCTGCCTCTTTTACCTCTTCGAGAAG
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