mRNA_Ecto-sp8_S_contig104626.739.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104626.739.1
Unique NamemRNA_Ecto-sp8_S_contig104626.739.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: A0A2E3M1G9_9RICK (Acriflavine resistance protein B (Fragment) n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E3M1G9_9RICK)

HSP 1 Score: 308 bits (788), Expect = 6.660e-98
Identity = 161/172 (93.60%), Postives = 167/172 (97.09%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTK GIAGLWGKVQDGAD GLNWFN++LYQPALSATI YRYAAVLLFI LFI+VMSLPLTG VRVGFFPSMQGDTVSAN+SLYSDASFGQT++NLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI
Sbjct:  461 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKKGIAGLWGKVQDGADNGLNWFNEKLYQPALSATIAYRYAAVLLFITLFIVVMSLPLTGVVRVGFFPSMQGDTVSANMSLYSDASFGQTDRNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 632          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: F5Z532_ALTNA (Acriflavin resistance protein n=12 Tax=Alteromonas TaxID=226 RepID=F5Z532_ALTNA)

HSP 1 Score: 301 bits (770), Expect = 3.570e-93
Identity = 157/172 (91.28%), Postives = 166/172 (96.51%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTK GIAGLWGKVQDGAD GLNWFN++LYQPALSATI YRYAAVLLFI LFI+VMSLPLTG VRVGFFPSMQGDTVSAN+SL+SDASFGQT++NLLRLERAAIEADKQL+EEKGAD SGM+SLQVTASGDQSGTI
Sbjct:  461 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKKGIAGLWGKVQDGADNGLNWFNEKLYQPALSATIAYRYAAVLLFITLFIVVMSLPLTGVVRVGFFPSMQGDTVSANMSLFSDASFGQTDRNLLRLERAAIEADKQLMEEKGADVSGMQSLQVTASGDQSGTI 632          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: A0A075NT38_9ALTE (Acriflavine resistance protein B n=7 Tax=Alteromonadaceae TaxID=72275 RepID=A0A075NT38_9ALTE)

HSP 1 Score: 266 bits (681), Expect = 1.950e-80
Identity = 140/172 (81.40%), Postives = 152/172 (88.37%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            GTLYSQFGTIVTLCLLLSVVESKLILP+HLAHLPTK T K GIAGLW KVQ  AD GL WFN RLYQP L  T+TYRYAAVL FIALF++VMSLPLTGAVRV FFPSMQGDTV+ANLSLYSDASFGQ E+NLL LE+ A+EAD+QL+ EKGA+ SG+ SLQVTASGDQSGTI
Sbjct:  461 GTLYSQFGTIVTLCLLLSVVESKLILPAHLAHLPTKTTPKKGIAGLWNKVQGKADAGLQWFNYRLYQPLLKVTVTYRYAAVLFFIALFVVVMSLPLTGAVRVSFFPSMQGDTVTANLSLYSDASFGQNERNLLLLEQNALEADRQLIAEKGAEGSGISSLQVTASGDQSGTI 632          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: A0A7X5RL88_9ALTE (MMPL family transporter n=2 Tax=Alteromonas profundi TaxID=2696062 RepID=A0A7X5RL88_9ALTE)

HSP 1 Score: 265 bits (676), Expect = 1.000e-79
Identity = 138/172 (80.23%), Postives = 154/172 (89.53%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            G LYSQFG IVT+CLLLSVVESKLILPSHLAHLPTKKT + GIA +WG VQD AD  L WFN+R+YQP L+ATITYRYAAV LFIALF++VMSLPLTGAVRVGFFPSMQGDTV+AN+SLYSDASFGQTE+NLL LERAAI+AD  L+EE GA  +G+KSLQV+ASGDQSGTI
Sbjct:  461 GKLYSQFGMIVTICLLLSVVESKLILPSHLAHLPTKKTPQRGIARIWGNVQDKADDSLQWFNERIYQPVLNATITYRYAAVFLFIALFVVVMSLPLTGAVRVGFFPSMQGDTVTANMSLYSDASFGQTERNLLTLERAAIQADAALIEEVGAQGTGIKSLQVSASGDQSGTI 632          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: A0A4U0ZJU1_9ALTE (Efflux RND transporter permease subunit n=31 Tax=Alteromonadaceae TaxID=72275 RepID=A0A4U0ZJU1_9ALTE)

HSP 1 Score: 251 bits (642), Expect = 8.230e-75
Identity = 128/172 (74.42%), Postives = 148/172 (86.05%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTK+  + G+ G+W KVQ  AD GL WFN R+YQ  L   + YRYAAVLLF+ALF++V+SLPLTG VRV FFPSMQGDTVSAN+SLYSDAS+GQ E+NL+ LE+ A+EAD+QL +E GAD+SG+ SLQVTASGDQSGTI
Sbjct:  483 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKQKARRGLGGVWNKVQQKADGGLQWFNYRVYQRVLKVAVAYRYAAVLLFVALFVMVVSLPLTGVVRVSFFPSMQGDTVSANMSLYSDASYGQNERNLMLLEKNALEADRQLTQENGADKSGISSLQVTASGDQSGTI 654          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: S5TET5_9GAMM (Acriflavine resistance protein B n=5 Tax=Piscirickettsiaceae TaxID=135616 RepID=S5TET5_9GAMM)

HSP 1 Score: 240 bits (612), Expect = 1.120e-70
Identity = 119/172 (69.19%), Postives = 149/172 (86.63%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            GTLYSQFGT+VTLCLLLSVVESKLILP+HLAHLPTK+ T++G+AG+W K+Q  AD GL WFN R+Y+  L  TI YRYAA++ FIA+FI+V+SLPLTGAVRV FFPSMQGDTV+AN++L+SDASFGQ E+NLL LE+A +EADKQL++EK    +G+ SLQ+ A+GDQSG++
Sbjct:  461 GTLYSQFGTVVTLCLLLSVVESKLILPAHLAHLPTKQQTRTGLAGIWNKIQTAADNGLQWFNYRVYKRLLKLTIAYRYAAIMFFIAVFIIVISLPLTGAVRVSFFPSMQGDTVTANMALHSDASFGQNEKNLLTLEQAVLEADKQLLQEKNKSGTGIGSLQILANGDQSGSL 632          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: UPI001C0956D4 (efflux RND transporter permease subunit n=1 Tax=Alteromonas sp. C1M14 TaxID=2841567 RepID=UPI001C0956D4)

HSP 1 Score: 229 bits (585), Expect = 6.460e-67
Identity = 121/172 (70.35%), Postives = 141/172 (81.98%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            G LYSQFGT+VT+CLLLSVVESKLILPSHLAHLPT +  K G+A LWGKVQ GAD+GL  FN R+YQPAL   I YRY AV+LF+ALF+LV+ +PL G VRVGFFPSMQGDTVSA LSL SDASFGQT +NL RLE    EAD+QL+E+ G + +G+ SLQVT SGDQSG++
Sbjct:  462 GKLYSQFGTVVTICLLLSVVESKLILPSHLAHLPTHRKPKKGLADLWGKVQRGADRGLMGFNLRIYQPALRKAIRYRYGAVMLFVALFVLVIGMPLNGMVRVGFFPSMQGDTVSATLSLQSDASFGQTAKNLERLETTLNEADQQLMEKVGKEGTGIGSLQVTGSGDQSGSL 633          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: A0A1E7ZGB3_9ALTE (Acriflavine resistance protein B n=1 Tax=Alteromonas confluentis TaxID=1656094 RepID=A0A1E7ZGB3_9ALTE)

HSP 1 Score: 225 bits (574), Expect = 2.170e-65
Identity = 118/172 (68.60%), Postives = 142/172 (82.56%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            G LYSQFG IVT+CLLLSVVESKLILP+HLAHLPT +  K GIA LWGKVQ GAD+GL++FN+R+YQPAL   I YRYA+V+LFIALFILV+ +PL G VRVGFFPSM GDTVSA ++L SDAS+GQ E+NL RLE    +AD  L+E+ G + SG+ +LQVTASGDQSG++
Sbjct:  462 GKLYSQFGMIVTICLLLSVVESKLILPAHLAHLPTHRKPKKGIADLWGKVQRGADRGLSFFNERMYQPALKKAIQYRYASVMLFIALFILVIGMPLNGIVRVGFFPSMPGDTVSATMTLQSDASYGQNEKNLTRLENTLNQADAFLMEKHGLEGSGIGNLQVTASGDQSGSL 633          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: A0A346NKP4_9ALTE (Efflux RND transporter permease subunit n=1 Tax=Salinimonas sediminis TaxID=2303538 RepID=A0A346NKP4_9ALTE)

HSP 1 Score: 224 bits (570), Expect = 7.750e-65
Identity = 116/172 (67.44%), Postives = 140/172 (81.40%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            G LYSQFGTIVTLCLLLSVVESKLILP+HLAHLPT +    GIAG+WG +Q+ AD GL+W   RLY+P L   + YRYAAV  FI L ILV+S+P++GAVRVGFFPSM GDTV A+++L+SDASFGQT+ NLLRLE A  +ADKQL++E  A  SG+KSLQV ASGDQ+G++
Sbjct:  462 GKLYSQFGTIVTLCLLLSVVESKLILPAHLAHLPTHRKPGKGIAGIWGNIQNKADSGLSWVRDRLYRPVLQKVMLYRYAAVAGFITLLILVLSMPMSGAVRVGFFPSMPGDTVEASMTLHSDASFGQTQANLLRLENAVNQADKQLMQEHAATGSGIKSLQVAASGDQAGSL 633          
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Match: A0A385MZS4_9ALTE (Efflux RND transporter permease subunit n=2 Tax=Alteromonadaceae TaxID=72275 RepID=A0A385MZS4_9ALTE)

HSP 1 Score: 224 bits (570), Expect = 7.750e-65
Identity = 117/172 (68.02%), Postives = 140/172 (81.40%), Query Frame = 1
Query:    1 GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKVQDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAVRVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEKGADESGMKSLQVTASGDQSGTI 516
            G LYSQFG IVT+CLLLSVVESKLILPSHLAHLPT +  + GIA LWGKVQ GAD+GL++FN+R+YQPAL   I YRYAAV+LF+ALFILV+ +P+ G VRVGFFPSM GDTV A+++L SDASFGQ E+NL RLE    +AD  L+   G + SG+ +LQVTASGDQSG+I
Sbjct:  462 GKLYSQFGMIVTICLLLSVVESKLILPSHLAHLPTHRKPRKGIADLWGKVQRGADRGLSFFNERMYQPALRKAIQYRYAAVMLFVALFILVIGMPMNGVVRVGFFPSMPGDTVEASMTLQSDASFGQNEKNLTRLENTLNQADDFLMNNLGLEGSGIANLQVTASGDQSGSI 633          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104626.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3M1G9_9RICK6.660e-9893.60Acriflavine resistance protein B (Fragment) n=1 Ta... [more]
F5Z532_ALTNA3.570e-9391.28Acriflavin resistance protein n=12 Tax=Alteromonas... [more]
A0A075NT38_9ALTE1.950e-8081.40Acriflavine resistance protein B n=7 Tax=Alteromon... [more]
A0A7X5RL88_9ALTE1.000e-7980.23MMPL family transporter n=2 Tax=Alteromonas profun... [more]
A0A4U0ZJU1_9ALTE8.230e-7574.42Efflux RND transporter permease subunit n=31 Tax=A... [more]
S5TET5_9GAMM1.120e-7069.19Acriflavine resistance protein B n=5 Tax=Piscirick... [more]
UPI001C0956D46.460e-6770.35efflux RND transporter permease subunit n=1 Tax=Al... [more]
A0A1E7ZGB3_9ALTE2.170e-6568.60Acriflavine resistance protein B n=1 Tax=Alteromon... [more]
A0A346NKP4_9ALTE7.750e-6567.44Efflux RND transporter permease subunit n=1 Tax=Sa... [more]
A0A385MZS4_9ALTE7.750e-6568.02Efflux RND transporter permease subunit n=2 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104626contigEcto-sp8_S_contig104626:3..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score301.2
Seed ortholog evalue3.1e-79
Seed eggNOG ortholog715451.ambt_15445
Model size516
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EggNOG OGs1MU48@1224,1RMBN@1236,469RQ@72275,COG0841@1,COG0841@2
Cds size516
COG Functional cat.V
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143145.2147658-CDS-Ecto-sp8_S_contig104626:2..5181681143145.2147658-CDS-Ecto-sp8_S_contig104626:2..518Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104626 3..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104626.739.1prot_Ecto-sp8_S_contig104626.739.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104626 3..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104626.739.1

>prot_Ecto-sp8_S_contig104626.739.1 ID=prot_Ecto-sp8_S_contig104626.739.1|Name=mRNA_Ecto-sp8_S_contig104626.739.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=172bp
GTLYSQFGTIVTLCLLLSVVESKLILPSHLAHLPTKKTTKSGIAGLWGKV
QDGADKGLNWFNKRLYQPALSATITYRYAAVLLFIALFILVMSLPLTGAV
RVGFFPSMQGDTVSANLSLYSDASFGQTEQNLLRLERAAIEADKQLVEEK
GADESGMKSLQVTASGDQSGTI
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mRNA from alignment at Ecto-sp8_S_contig104626:3..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104626.739.1 ID=mRNA_Ecto-sp8_S_contig104626.739.1|Name=mRNA_Ecto-sp8_S_contig104626.739.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104626:3..518+ (Ectocarpus species8 EcLAC_412)
GGCACCTTGTATTCTCAGTTCGGTACCATTGTTACCCTATGCCTTTTGTT GTCGGTAGTGGAATCTAAGTTAATTCTACCATCTCACTTAGCGCATTTAC CCACCAAAAAAACCACCAAAAGCGGTATTGCTGGGCTGTGGGGTAAAGTG CAAGATGGCGCTGACAAGGGGTTAAACTGGTTCAATAAAAGGCTTTATCA ACCGGCACTAAGTGCCACAATTACATATCGTTATGCTGCTGTTTTACTCT TTATTGCACTGTTCATATTGGTGATGAGTCTACCGCTAACCGGTGCGGTA CGAGTGGGCTTTTTCCCTAGTATGCAGGGCGATACTGTATCGGCGAATTT GTCTCTTTATAGTGATGCTAGTTTTGGTCAAACCGAACAAAATTTACTAC GTCTGGAACGCGCTGCCATTGAAGCAGATAAACAATTGGTAGAAGAAAAA GGTGCTGATGAAAGTGGTATGAAAAGCCTGCAGGTGACAGCTAGCGGCGA TCAAAGTGGCACTATT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104626:3..518+

>mRNA_Ecto-sp8_S_contig104626.739.1 ID=mRNA_Ecto-sp8_S_contig104626.739.1|Name=mRNA_Ecto-sp8_S_contig104626.739.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104626:3..518+ (Ectocarpus species8 EcLAC_412)
GGCACCTTGTATTCTCAGTTCGGTACCATTGTTACCCTATGCCTTTTGTT
GTCGGTAGTGGAATCTAAGTTAATTCTACCATCTCACTTAGCGCATTTAC
CCACCAAAAAAACCACCAAAAGCGGTATTGCTGGGCTGTGGGGTAAAGTG
CAAGATGGCGCTGACAAGGGGTTAAACTGGTTCAATAAAAGGCTTTATCA
ACCGGCACTAAGTGCCACAATTACATATCGTTATGCTGCTGTTTTACTCT
TTATTGCACTGTTCATATTGGTGATGAGTCTACCGCTAACCGGTGCGGTA
CGAGTGGGCTTTTTCCCTAGTATGCAGGGCGATACTGTATCGGCGAATTT
GTCTCTTTATAGTGATGCTAGTTTTGGTCAAACCGAACAAAATTTACTAC
GTCTGGAACGCGCTGCCATTGAAGCAGATAAACAATTGGTAGAAGAAAAA
GGTGCTGATGAAAGTGGTATGAAAAGCCTGCAGGTGACAGCTAGCGGCGA
TCAAAGTGGCACTATT
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