mRNA_Ecto-sp8_S_contig10462.737.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10462.737.1
Unique NamemRNA_Ecto-sp8_S_contig10462.737.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: D7G427_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G427_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.300e-16
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1
Query:   85 SLRPTMLDEGCETVLREAGKLRGCVDEAYGALRDLQCEV 201
            SLRPTMLDEGCE VLREAGKLRGCVDEAYGALRDLQCEV
Sbjct:  479 SLRPTMLDEGCEAVLREAGKLRGCVDEAYGALRDLQCEV 517          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: A0A7S3MBM2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBM2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.400e-16
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   37 RRQACLCIRNIAARGPSLRPTMLDEGCETVLREAGKLRGCVDEAYGALRDLQCEV 201
            +RQ CL +RNIAARGP LRP +LD G E +LR AG++   VDEAYGALRDL CEV
Sbjct:  405 QRQGCLTVRNIAARGPELRPVLLDAGFEDLLRAAGRIMDVVDEAYGALRDLGCEV 459          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: A0A835Z2B7_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.560e-14
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   37 RRQACLCIRNIAARGPSLRPTMLDEGCETVLREAGKLRGCVDEAYGALRDLQCEVR 204
            +RQ CL IRN+AAR P LRP +LDEG E +L+ AGK +G VDEAY ALRDL C+ +
Sbjct:  379 QRQCCLFIRNVAARCPELRPVLLDEGFEDLLKTAGKHQGAVDEAYAALRDLGCQAQ 434          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: F0WM58_9STRA (Uncharacterized protein AlNc14C153G7561 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM58_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.020e-10
Identity = 32/54 (59.26%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   40 RQACLCIRNIAARGPSLRPTMLDEGCETVLREAGKLRGCVDEAYGALRDLQCEV 201
            RQA L IRNI AR P  +   LDEG E +LR A  L  C  EAYGALRDL CE 
Sbjct:  409 RQASLAIRNIVARSPEFQKDFLDEGIEAMLRGALDLSSCQSEAYGALRDLNCET 462          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: A0A5D6Y9J7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9J7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.690e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   58 IRNIAARGPSLRPTMLDEGCETVLREAGKLRGCVDEAYGALRDLQCEVR 204
            +RN+ AR  +LRP +LDEG E +LR A + RGC DEAY ALRDL C ++
Sbjct:  429 LRNLGARSVALRPRILDEGVEPLLRAAVQRRGCGDEAYAALRDLGCAIQ 477          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: A0A024GL17_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GL17_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.890e-9
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   40 RQACLCIRNIAARGPSLRPTMLDEGCETVLREAGKLRGCVDEAYGALRDLQCEV 201
            RQA L IRNI +R P  +   LD+G E +LR+A     C  EAYGALRDL CE 
Sbjct:  410 RQASLAIRNIVSRSPEFQKDFLDQGIEVLLRDALAQFSCQSEAYGALRDLNCET 463          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: K3WSJ3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSJ3_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 1.930e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   88 LRPTMLDEGCETVLREAGKLRGCVDEAYGALRDLQCEVRQS 210
            LRP +LDE  E +LR+A + RGC DEAY ALRDL C+++ S
Sbjct:  440 LRPRILDEDIEPLLRDAQRYRGCGDEAYAALRDLGCDIQLS 480          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: A0A1S3VLI6_VIGRR (armadillo repeat-containing protein 6 n=6 Tax=Vigna TaxID=3913 RepID=A0A1S3VLI6_VIGRR)

HSP 1 Score: 50.8 bits (120), Expect = 1.250e-5
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1
Query:    4 AAPNFPHVTQSRRQACLCIRNIAARGPSLRPTMLDEGCETVLREAGKLRG-CVDEAYGALRDL 189
            A   FP   Q +R +CL IRN+ AR P  R T+L  G E  +R+A +    C D A  ALRDL
Sbjct:  386 AMKKFPAAHQMQRNSCLMIRNLVARNPENRTTLLLNGIEKYIRKAKQTHSNCKDAATDALRDL 448          
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Match: E1ZQY2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQY2_CHLVA)

HSP 1 Score: 50.8 bits (120), Expect = 1.260e-5
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 1
Query:   25 VTQSRRQACLCIRNIAARGPSLRPTMLDEGCETVLREA-GKLRGCVDEAYGALRDL 189
             T  +RQAC+ IRN AAR P +R  +LD+G E +LR+       C D    ALRDL
Sbjct:  428 ATAVQRQACMAIRNSAARNPDVRAVLLDKGAEGLLRQLKAAYPSCADAGSAALRDL 483          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10462.737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G427_ECTSI1.300e-1697.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3MBM2_9STRA8.400e-1667.27Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835Z2B7_9STRA2.560e-1462.50Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
F0WM58_9STRA3.020e-1059.26Uncharacterized protein AlNc14C153G7561 n=1 Tax=Al... [more]
A0A5D6Y9J7_9STRA3.690e-957.14Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024GL17_9STRA6.890e-953.70Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
K3WSJ3_GLOUD1.930e-658.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1S3VLI6_VIGRR1.250e-544.44armadillo repeat-containing protein 6 n=6 Tax=Vign... [more]
E1ZQY2_CHLVA1.260e-546.43Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10462contigEcto-sp8_S_contig10462:338..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.0
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D7G427
Model size210
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.hematopoietic progenitor cell differentiation
EggNOG OGsKOG4199@1,KOG4199@2759
Cds size210
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143145.118742-CDS-Ecto-sp8_S_contig10462:337..5471681143145.118742-CDS-Ecto-sp8_S_contig10462:337..547Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10462 338..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10462.737.1prot_Ecto-sp8_S_contig10462.737.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10462 338..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10462.737.1

>prot_Ecto-sp8_S_contig10462.737.1 ID=prot_Ecto-sp8_S_contig10462.737.1|Name=mRNA_Ecto-sp8_S_contig10462.737.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=70bp
SAAPNFPHVTQSRRQACLCIRNIAARGPSLRPTMLDEGCETVLREAGKLR
GCVDEAYGALRDLQCEVRQS
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mRNA from alignment at Ecto-sp8_S_contig10462:338..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10462.737.1 ID=mRNA_Ecto-sp8_S_contig10462.737.1|Name=mRNA_Ecto-sp8_S_contig10462.737.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10462:338..547+ (Ectocarpus species8 EcLAC_412)
TCCGCTGCACCGAATTTCCCGCACGTCACCCAATCCCGACGTCAGGCTTG TCTGTGCATCCGAAACATTGCCGCCCGAGGGCCGTCGCTGCGTCCCACCA TGCTGGACGAAGGGTGTGAGACGGTGTTAAGGGAGGCCGGGAAGCTCAGG GGCTGCGTCGACGAGGCCTACGGTGCTCTACGCGACCTTCAGTGTGAGGT GCGCCAGAGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10462:338..547+

>mRNA_Ecto-sp8_S_contig10462.737.1 ID=mRNA_Ecto-sp8_S_contig10462.737.1|Name=mRNA_Ecto-sp8_S_contig10462.737.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10462:338..547+ (Ectocarpus species8 EcLAC_412)
TCCGCTGCACCGAATTTCCCGCACGTCACCCAATCCCGACGTCAGGCTTG
TCTGTGCATCCGAAACATTGCCGCCCGAGGGCCGTCGCTGCGTCCCACCA
TGCTGGACGAAGGGTGTGAGACGGTGTTAAGGGAGGCCGGGAAGCTCAGG
GGCTGCGTCGACGAGGCCTACGGTGCTCTACGCGACCTTCAGTGTGAGGT
GCGCCAGAGT
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