mRNA_Ecto-sp8_S_contig10460.734.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10460.734.1 vs. uniprot
Match: D8LES1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES1_ECTSI) HSP 1 Score: 1123 bits (2906), Expect = 0.000e+0 Identity = 751/867 (86.62%), Postives = 762/867 (87.89%), Query Frame = 1
Query: 1 QGAATLSLRAEMIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKLKSGLVTLNEGRRAVLLSDNDPLSLRAPIVGVWVSGGDSGGTGGVGTPSGQQQQSGRRPSPLTHPYVYPACLRFLLGFRGGGGPSKATAAAA-----SPVAFLVLQLPGGVGGGTPACYEACAVSASAATPTAAGGGGMRVASVGFEQLDFSADVDVSVGDGGREGGATGGGASSANRAVVIARLRRVSSLTAAEGAFGRALARARGRYRGTQQAENGATTPPFLPSPSATRTPLQLSPQQRPPPPRSIGATQRWHSRHHNQPTPEDRENEGPAEMQQDRPLLHPPVPIAAPTKPVVHSPRSAASKADSSPARATGHTSAINTPEKILFHAIHHSTSPAKRGLRGGSGPRASVLGGAGERATRPGDGRGRQGPLERRGDVWRSREEGFRELSSRGGVSSHRTAAAEGREASSSSPPLVPEKGEELPSSSPXXXXXXXXXXVAPAWTPRSSLDLLALAPEARETGDTAWAQQAMPPPSEAPHNRAKSMVEASTNTSLFWGAPLMPQAAAAAAGGSPTRPGTAVLATKAAFDTPEAERCHHASKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRHGWTTQRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTAWSRNSSDVDEGEATTSLELL--RVPPXXXXXXXXXXSAARLNSSVSPAGSAHRIDENASEDDKASGTTGEEEDREGQQAVVVVTPERNGSGDGGRGRQPLLGRRGGERGGAWGVPIVSAADLMVVPRIEFGQMTDDEMGSDLDEGETIGRIESKYLQGGGSVAPFLRC 2580
QGAATLSLRAEMIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKL+SGLVTLNEGRRAVLLSDNDPLSLRAPIVGVWVSGGDSGGTGGVGTPSGQQQQSGRR SPLTHPYVYPACLRFLLGFRGG G SK+ SPVAFLVLQLPGGVGGGTP CYEACAVSASAATPTAAGGGGMRVASVGFEQLDFSADVDVSVG NRAVVIARLRRVSSLTAA GAFGRALARARGRYRGTQQAENGA TPPFLPSPSATRTP Q SPQQRPPPPRSIGATQRWHSRHH+QPTPEDRENEGP E+QQDRPLLHPPVPIAAPTKPVVHSPRSAASKADSSPARATG TSAINTPEKIL HAIHHSTSPAKRGLRGGSGPRASVLGGAGE TRPGDG GR P WRS+EEGFRELSS EGREASSSSPP +PEKGEELPS XXXXXXXXXX PAWTPR+SLDLLALAPEA TGDTAWAQQAMPPPSEAP+NRAKSMVEASTNTSLFWGAPLMPQAAAAAAGGSPTRPGT VLATKAAFDTPE ERCHHASK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX ASTAWSRNSSDVDEGE TTSLELL RVPP XXXXXXXXXSAARLNSSVS AGSAHRID+NAS+DDKASGTTGEEE REGQQAVV+VTPERNGS DGGRGRQPLLGRRGGERGGAWGVPIV ADLMVVPRIEFGQMTDDEMGSDLDEGETIGRIESKYLQGGGSVAPFLRC
Sbjct: 387 QGAATLSLRAEMIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKLQSGLVTLNEGRRAVLLSDNDPLSLRAPIVGVWVSGGDSGGTGGVGTPSGQQQQSGRRLSPLTHPYVYPACLRFLLGFRGGSGASKSXXXXXXXXXXSPVAFLVLQLPGGVGGGTPGCYEACAVSASAATPTAAGGGGMRVASVGFEQLDFSADVDVSVGGXXXXXXXXXXXXXXXNRAVVIARLRRVSSLTAAGGAFGRALARARGRYRGTQQAENGAATPPFLPSPSATRTPPQPSPQQRPPPPRSIGATQRWHSRHHSQPTPEDRENEGPTEVQQDRPLLHPPVPIAAPTKPVVHSPRSAASKADSSPARATGRTSAINTPEKILSHAIHHSTSPAKRGLRGGSGPRASVLGGAGEGTTRPGDGHGRPRP------PWRSQEEGFRELSSGXXXXXXXXXXVEGREASSSSPPSLPEKGEELPSXXXXXXXXXXXXXXXPAWTPRNSLDLLALAPEA--TGDTAWAQQAMPPPSEAPYNRAKSMVEASTNTSLFWGAPLMPQAAAAAAGGSPTRPGTVVLATKAAFDTPEGERCHHASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXGGASTAWSRNSSDVDEGETTTSLELLPLRVPPPXXXXXXXXXSAARLNSSVSSAGSAHRIDDNASKDDKASGTTGEEEGREGQQAVVIVTPERNGSCDGGRGRQPLLGRRGGERGGAWGVPIVPVADLMVVPRIEFGQMTDDEMGSDLDEGETIGRIESKYLQGGGSVAPFLRC 1228
BLAST of mRNA_Ecto-sp8_S_contig10460.734.1 vs. uniprot
Match: A0A6H5KM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM75_9PHAE) HSP 1 Score: 815 bits (2104), Expect = 4.250e-278 Identity = 617/939 (65.71%), Postives = 642/939 (68.37%), Query Frame = 1
Query: 1 QGAATLSLRAEMIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKLKSGLVTLNEGRRAVLLSDNDPLSLRAPIVGVWVSGGDSGGTGGVGTPSGQQQQSGRRPSPLTHPYVYPACLRFLLGFRGGGGPSKATAAAA--------SPVAFLVLQLPGGVGGGTPACYEACAVSASAATPTAAGGGGMRVASVGFEQLDFSADVDVSVGDGGREGGATGGGASSANRAVVIARLRRVSSLTAAEG---AFGRALARARG-RYRGTQQAENGATTPPFLPSPSATRTPLQLSPQQRPPPPRSIGATQRWHSRHHNQPTPEDRENEGPAEMQQDRPLLHPPVPIAAPTKPVVHSPRSAASKADSSPARATGHTSAINTPEKILFHAIHHSTSPAKRGLRGGSGPRASVLGGAGERATRPGDGRGRQGPLERRGDVWRSREEGFRELSSRGGVSSHRTAAAEGREASSSSPPLVPEKGEELPSSSPXXXXXXXXXXVAPAWTPRSSLDLLALAPEARE------------------------------------------------------------------TGDTAWAQQAMPPPSEAPHNRAKSMVEASTNTSLFWGAPLMPQAAAAAAGGSPTRPGTAVLATKAAFDTPEAERCHHASKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRHGWTTQRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTAWSRNSSDVDEGEATTSLELLRVPPXXXXXXXXXX-SAARLNSSVSPAGSAHRIDENASEDDKASGTTGEEEDREGQQAVVVVTPERNGSGDGGRGRQPLLGRRGGERGGAWGVPIVSAADLMVVPRIEFGQMTDDEMGSDLDEGETIGRIESKYLQGGGSVAPFLRC 2580
QGAATLSLRAE+IAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKL+SGLVTLNEGRRAVLLSD+DPLSLRAPIVGVWVSGGDSG TGGVGTPSGQQQQSGRR SPLTHPYVYPACLRFL+GFRG GG SK+ SPVAFLVLQLPGGVGGGT G G G GG R ++ A + R + A +G A L + RYRGTQQAENGAT PPF+PSPSATR PLQ SPQQRPPPPR+IGATQRWHSR+HNQPTPEDRENEGP EMQQDRPLLHPPVPIAAPTKPVVHSPRSAASKADS PARATGHTSAIN+PEKIL HAIHHSTSPAKRGL GGSGPRAS GGAGE ATRPGDGR RQGPLERRGDVWRS+EEGFRELSS H TAA EGREASSS+PPL+PEK EELPSSSP APAWTPRSSLDLLALAPEAR TGDTAWAQQAMPPPSEA ++R KSMVEASTNTSLFWG PL+PQA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASTAWSRNSSDVD GEAT L LLRVPP SAARL+SSVS A SA R+DENASEDDKA VVTP+R G+ DGGRGRQPLLGRR GE G WGVPIV AADLMVVPRIEF QMTDDEMGSDLDEGETIGRIESKYLQGGGSVAPFLRC
Sbjct: 370 QGAATLSLRAEIIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKLQSGLVTLNEGRRAVLLSDSDPLSLRAPIVGVWVSGGDSGSTGGVGTPSGQQQQSGRRSSPLTHPYVYPACLRFLIGFRGAGGTSKSXXXXXXXXXXXXXSPVAFLVLQLPGGVGGGTXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXRGCRRGHAGVLRGVRGG---MCQRQIMTASVVRGFTRLAVDGMRAAHNAGLTNSLSDRYRGTQQAENGATAPPFVPSPSATRMPLQPSPQQRPPPPRAIGATQRWHSRYHNQPTPEDRENEGPTEMQQDRPLLHPPVPIAAPTKPVVHSPRSAASKADSPPARATGHTSAINSPEKILSHAIHHSTSPAKRGLGGGSGPRASAPGGAGEGATRPGDGRRRQGPLERRGDVWRSQEEGFRELSSGXXXXXHPTAAVEGREASSSAPPLLPEKVEELPSSSP----------AAPAWTPRSSLDLLALAPEARTYFLSQQRQLSSLAQQLHRLQVTMRDQQQDHQPMXXXXXXXXXXRLISVPTPSAAASPVSTGGAAKATGDTAWAQQAMPPPSEASYSRTKSMVEASTNTSLFWGVPLLPQA---------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNDTSDGGASTAWSRNSSDVDLGEATP-LGLLRVPPLPAGLGSGSGASAARLHSSVSSADSAPRVDENASEDDKAXXXXXXXXXXXXXXXXXVVTPDRRGACDGGRGRQPLLGRRRGEGGRTWGVPIVPAADLMVVPRIEFAQMTDDEMGSDLDEGETIGRIESKYLQGGGSVAPFLRC 1249
BLAST of mRNA_Ecto-sp8_S_contig10460.734.1 vs. uniprot
Match: UPI000A1C1CC1 (SCL-interrupting locus protein n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C1CC1) HSP 1 Score: 61.2 bits (147), Expect = 8.850e-6 Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 10 ATLSLRAEMIAPALGVRLTPIAAPALLHTALYQSLLS--RGAEDKLKSGLVTLNEGRRAVLLSDNDPLSLRAPIVGVWVSG 246
A SL ++PA GV + P+ A ++ TAL +SL S R A + G VT+++GR+ +LL ++DP +L P+VGVW SG
Sbjct: 192 ARFSLTWSCVSPATGVHVEPVRAAHVIPTALLRSLTSPARPAATSRQKGFVTMDQGRKLLLLLESDPKALSLPLVGVWFSG 272 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10460.734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10460.734.1 >prot_Ecto-sp8_S_contig10460.734.1 ID=prot_Ecto-sp8_S_contig10460.734.1|Name=mRNA_Ecto-sp8_S_contig10460.734.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=861bp QGAATLSLRAEMIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKLKSGback to top mRNA from alignment at Ecto-sp8_S_contig10460:2592..6834- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10460.734.1 ID=mRNA_Ecto-sp8_S_contig10460.734.1|Name=mRNA_Ecto-sp8_S_contig10460.734.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4243bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10460:2592..6834- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10460:2592..6834- >mRNA_Ecto-sp8_S_contig10460.734.1 ID=mRNA_Ecto-sp8_S_contig10460.734.1|Name=mRNA_Ecto-sp8_S_contig10460.734.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2583bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10460:2592..6834- (Ectocarpus species8 EcLAC_412)back to top |