mRNA_Ecto-sp8_S_contig104585.729.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104585.729.1
Unique NamemRNA_Ecto-sp8_S_contig104585.729.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: A0A6H5KXX9_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.560e-30
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPARGESLTVDQL 159
            PAFV+LGGQKCGTTLLYECLNQHPLV RGRRRETHFFDWAWPA+GESLTVDQL
Sbjct:  180 PAFVILGGQKCGTTLLYECLNQHPLVARGRRRETHFFDWAWPAKGESLTVDQL 232          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: D8LJQ2_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.070e-29
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPARGESLTVDQL 159
            PAFVVLGGQKCGTTLLYECLNQHPLV RGRRRETHFFDWAWPA+GESLTVDQL
Sbjct:  265 PAFVVLGGQKCGTTLLYECLNQHPLVARGRRRETHFFDWAWPAKGESLTVDQL 317          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: A0A6G6CDK9_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDK9_SACJA)

HSP 1 Score: 90.5 bits (223), Expect = 4.330e-20
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPAR 132
            PAF+++GGQKCGTTLLYECLNQHPLV RG RRETHFFDW W  R
Sbjct:  264 PAFIIIGGQKCGTTLLYECLNQHPLVARGGRRETHFFDWTWQPR 307          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: A0A835YZ41_9STRA (Sulfotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ41_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.200e-16
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAW 123
            PAF+V+G QKCGTT +YE LNQHPLV+R RRRETHFFDW W
Sbjct:  290 PAFIVIGAQKCGTTSMYEYLNQHPLVLRSRRRETHFFDWRW 330          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: A0A7S1B8N6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8N6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.380e-14
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQ-HPLVVRGRRRETHFFDWAWPARGESLTVDQL 159
            P+F++LG QKCGTT +YE L Q HPL +RGRRRE+HFFDW WP   E +++ +L
Sbjct:  350 PSFLILGAQKCGTTTIYEKLMQYHPLFIRGRRRESHFFDWRWP---EKMSLQKL 400          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: A0A7S3HEI2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEI2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.260e-14
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAW 123
            P FV++G QKCGTT +YE L QHPLVVRG+RRETH+FDW +
Sbjct:  271 PTFVIIGAQKCGTTSMYEYLCQHPLVVRGKRRETHYFDWRY 311          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: K3XA32_GLOUD (Sulfotransfer_1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA32_GLOUD)

HSP 1 Score: 73.2 bits (178), Expect = 8.280e-14
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPA 129
            P +VV+G QKCGTT LY+ L+QHPL ++G+RRE HFFDWAW A
Sbjct:  332 PNWVVIGAQKCGTTSLYDYLSQHPLAMKGQRREPHFFDWAWDA 374          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: A0A7S1U2U4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2U4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.420e-13
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPARGESLTVDQL 159
            P F+++G QK GTT +YE L QHP+V+RGRRRETHF DW W    E     QL
Sbjct:   85 PHFLIIGAQKAGTTSMYEYLAQHPMVIRGRRRETHFLDWRWREELEGRPGRQL 137          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: A0A7S1XSD5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSD5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.940e-13
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPARGESLTVDQL 159
            P F+++G QK GTT +YE L QHP+V+RGRRRETHF DW W    E     QL
Sbjct:  288 PHFLIIGAQKAGTTSMYEYLAQHPMVIRGRRRETHFLDWRWREELEGRPGRQL 340          
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Match: W7U713_9STRA (Sulfotransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U713_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.360e-13
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPARGESLT 147
            P+F++LG QK GTT LYE L QHPLV+R RRRETH+ DW W  R E LT
Sbjct:  312 PSFLILGAQKSGTTSLYEYLCQHPLVLRARRRETHYLDWRW-RREEHLT 359          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104585.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXX9_9PHAE5.560e-3094.34Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
D8LJQ2_ECTSI1.070e-2996.23Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6G6CDK9_SACJA4.330e-2081.82Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A835YZ41_9STRA2.200e-1678.05Sulfotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S1B8N6_9STRA2.380e-1459.26Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S3HEI2_9STRA8.260e-1470.73Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
K3XA32_GLOUD8.280e-1467.44Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A7S1U2U4_9STRA3.420e-1356.60Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XSD5_9STRA3.940e-1356.60Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7U713_9STRA7.360e-1365.31Sulfotransferase n=1 Tax=Nannochloropsis gaditana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104585contigEcto-sp8_S_contig104585:313..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.4
Seed ortholog evalue5.1e-25
Seed eggNOG ortholog2880.D8LJQ2
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
EggNOG OGs2CN6N@1,2QU6N@2759
Cds size159
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143144.5417674-CDS-Ecto-sp8_S_contig104585:312..4711681143144.5417674-CDS-Ecto-sp8_S_contig104585:312..471Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104585 313..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104585.729.1prot_Ecto-sp8_S_contig104585.729.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104585 313..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104585.729.1

>prot_Ecto-sp8_S_contig104585.729.1 ID=prot_Ecto-sp8_S_contig104585.729.1|Name=mRNA_Ecto-sp8_S_contig104585.729.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=53bp
PAFVVLGGQKCGTTLLYECLNQHPLVVRGRRRETHFFDWAWPARGESLTV
DQL
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mRNA from alignment at Ecto-sp8_S_contig104585:313..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104585.729.1 ID=mRNA_Ecto-sp8_S_contig104585.729.1|Name=mRNA_Ecto-sp8_S_contig104585.729.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104585:313..471- (Ectocarpus species8 EcLAC_412)
CCTGCCTTCGTAGTCCTAGGCGGACAGAAGTGCGGGACGACCCTGCTTTA CGAGTGCCTCAACCAGCACCCGCTCGTCGTGCGCGGTCGGCGCAGAGAGA CGCACTTCTTCGACTGGGCTTGGCCGGCGAGGGGGGAGTCGCTGACGGTG GACCAGCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104585:313..471-

>mRNA_Ecto-sp8_S_contig104585.729.1 ID=mRNA_Ecto-sp8_S_contig104585.729.1|Name=mRNA_Ecto-sp8_S_contig104585.729.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104585:313..471- (Ectocarpus species8 EcLAC_412)
CCTGCCTTCGTAGTCCTAGGCGGACAGAAGTGCGGGACGACCCTGCTTTA
CGAGTGCCTCAACCAGCACCCGCTCGTCGTGCGCGGTCGGCGCAGAGAGA
CGCACTTCTTCGACTGGGCTTGGCCGGCGAGGGGGGAGTCGCTGACGGTG
GACCAGCTG
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