mRNA_Ecto-sp8_S_contig10456.727.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10456.727.1
Unique NamemRNA_Ecto-sp8_S_contig10456.727.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10456.727.1 vs. uniprot
Match: A0A6H5KLV6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.370e-14
Identity = 70/115 (60.87%), Postives = 71/115 (61.74%), Query Frame = -2 
Query:    3 PRDHFHGPTFHALLNEYREENSAATAKKXXXXEGRDDGISVAIAADATAAGSPGDKGXXXXXXXXXXXXXX-------NTGGADAAEGATQPDDVSSQPVDDAAVPLPIDAYREE 326
            PRDHFHGPTFHALLNEYREEN       XXXX                         XXXXXXXXXXXXXX       NTGGADAA G TQP+D SS PV DAAVPLPIDAYREE
Sbjct:  535 PRDHFHGPTFHALLNEYREENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDRGNTGGADAAGGMTQPNDASSPPVVDAAVPLPIDAYREE 649
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10456.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLV6_9PHAE6.370e-1460.87Helicase ATP-binding domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10456contigEcto-sp8_S_contig10456:4676..5002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143144.4264598-CDS-Ecto-sp8_S_contig10456:4675..50021681143144.4264598-CDS-Ecto-sp8_S_contig10456:4675..5002Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10456 4676..5002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10456.727.1prot_Ecto-sp8_S_contig10456.727.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10456 4676..5002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10456.727.1

>prot_Ecto-sp8_S_contig10456.727.1 ID=prot_Ecto-sp8_S_contig10456.727.1|Name=mRNA_Ecto-sp8_S_contig10456.727.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=109bp
ISSRYASIGRGTAASSTGCDDTSSGCVAPSAASAPPVLPPSGLLLLLLLP
AAPLSPGEPAAVASAAMATEMPSSRPSSSCSFFAVAAEFSSRYSFSNAWK
VGPWKWSRG
back to top

mRNA from alignment at Ecto-sp8_S_contig10456:4676..5002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10456.727.1 ID=mRNA_Ecto-sp8_S_contig10456.727.1|Name=mRNA_Ecto-sp8_S_contig10456.727.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10456:4676..5002+ (Ectocarpus species8 EcLAC_412)
ATCTCCTCCCGGTACGCGTCGATCGGAAGGGGCACCGCGGCATCATCGAC
GGGCTGCGATGATACGTCGTCCGGCTGCGTCGCCCCCTCCGCCGCGTCCG
CGCCTCCTGTGTTGCCTCCGTCGGGACTGTTGCTGCTGTTGTTGTTGCCT
GCTGCTCCTTTGTCGCCGGGGGAACCAGCGGCAGTAGCATCAGCAGCGAT
GGCAACGGAGATGCCATCATCCCGTCCCTCCTCCTCTTGCTCCTTCTTCG
CGGTGGCGGCCGAGTTCTCCTCTCGGTACTCGTTCAGCAACGCGTGGAAG
GTGGGCCCGTGGAAGTGGTCGCGAGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10456:4676..5002+

>mRNA_Ecto-sp8_S_contig10456.727.1 ID=mRNA_Ecto-sp8_S_contig10456.727.1|Name=mRNA_Ecto-sp8_S_contig10456.727.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10456:4676..5002+ (Ectocarpus species8 EcLAC_412)
ATCTCCTCCCGGTACGCGTCGATCGGAAGGGGCACCGCGGCATCATCGAC
GGGCTGCGATGATACGTCGTCCGGCTGCGTCGCCCCCTCCGCCGCGTCCG
CGCCTCCTGTGTTGCCTCCGTCGGGACTGTTGCTGCTGTTGTTGTTGCCT
GCTGCTCCTTTGTCGCCGGGGGAACCAGCGGCAGTAGCATCAGCAGCGAT
GGCAACGGAGATGCCATCATCCCGTCCCTCCTCCTCTTGCTCCTTCTTCG
CGGTGGCGGCCGAGTTCTCCTCTCGGTACTCGTTCAGCAACGCGTGGAAG
GTGGGCCCGTGGAAGTGGTCGCGAGGC
back to top