mRNA_Ecto-sp8_S_contig10456.726.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A6H5KLV6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV6_9PHAE) HSP 1 Score: 120 bits (301), Expect = 2.830e-30 Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
+VHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR
Sbjct: 839 EVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 899
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI) HSP 1 Score: 117 bits (293), Expect = 3.420e-29 Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
+VHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTS PLFVGSRRFPVR
Sbjct: 991 EVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSSPLFVGSRRFPVR 1051
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: B8C762_THAPS (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C762_THAPS) HSP 1 Score: 81.3 bits (199), Expect = 5.920e-19 Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPV 180
+VHERSVDTD+LC +RL+ + P LRLI+MSATL+AN+ +Y+G PP+FVG+RRFP+
Sbjct: 4 EVHERSVDTDILCYLVRRLLASRPDLRLILMSATLAANMYQQYFGSHYPPIFVGARRFPI 63
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S4MMP8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMP8_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.200e-18 Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
+VHERSVDTD+LCL +RL+ THPT+RL++MSAT++A L Y+G PP+FVG+RRFP++
Sbjct: 798 EVHERSVDTDILCLLCRRLLTTHPTIRLVLMSATMAAALYRSYFGTPEPPIFVGARRFPIK 858
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: K0RU78_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU78_THAOC) HSP 1 Score: 85.9 bits (211), Expect = 4.180e-18 Identity = 35/61 (57.38%), Postives = 52/61 (85.25%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
+VHERSVDTD+LCL +RL+ +HPT+RL++MSAT++A L +Y+G+ PP+ VG+RRFP++
Sbjct: 791 EVHERSVDTDILCLLCRRLLNSHPTIRLVLMSATMAAELYQQYFGVPQPPIHVGARRFPIK 851
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S1NSJ8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NSJ8_9EUGL) HSP 1 Score: 79.3 bits (194), Expect = 5.470e-17 Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPV 180
+VHERSVDTDLLC FA++L++ HP LRL++MSATL A++ +Y+ + PPL VG R FP+
Sbjct: 44 EVHERSVDTDLLCCFARQLLQRHPNLRLVLMSATLQADVYQRYFDVGGPPLSVGCRAFPI 103
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S2SUV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUV2_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.940e-16 Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVG 162
+VHERS+DTD+LCL A+RL+ +HPTLRLI+MSAT++A L +Y+G+ PPLFVG
Sbjct: 205 EVHERSIDTDILCLLARRLLASHPTLRLILMSATIAAELHRQYFGVPEPPLFVG 258
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: B5Y583_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y583_PHATC) HSP 1 Score: 78.2 bits (191), Expect = 2.140e-15 Identity = 34/61 (55.74%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
+VHERSVDTD+LCL +RL++ + +RL++MSATL+A+L +Y+ T PP+ VG+RRFPV+
Sbjct: 643 EVHERSVDTDILCLLCRRLLKVNQNIRLVLMSATLAASLYQEYFNTTEPPIKVGARRFPVK 703
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S2L2B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B3_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 5.410e-15 Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPV 180
+VHERSVD+D+LCL +RL+ +HPT+RL++MSATL+A+L S+Y+G P + VG RRFP+
Sbjct: 447 EVHERSVDSDILCLLCRRLLHSHPTIRLVLMSATLAADLYSQYFGAPQP-IHVGVRRFPI 505
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S3JYC1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYC1_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 6.590e-14 Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRF 174
+VHERSVD +++CL A+RL+ +HP LRLIVMSATL LL+ Y+ P +FVG+RRF
Sbjct: 629 EVHERSVDAEVICLLARRLIHSHPNLRLIVMSATLCTELLADYFCTVEPHVFVGARRF 686 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10456.726.1 >prot_Ecto-sp8_S_contig10456.726.1 ID=prot_Ecto-sp8_S_contig10456.726.1|Name=mRNA_Ecto-sp8_S_contig10456.726.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=62bp QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPback to top mRNA from alignment at Ecto-sp8_S_contig10456:3452..3637- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10456.726.1 ID=mRNA_Ecto-sp8_S_contig10456.726.1|Name=mRNA_Ecto-sp8_S_contig10456.726.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10456:3452..3637- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10456:3452..3637- >mRNA_Ecto-sp8_S_contig10456.726.1 ID=mRNA_Ecto-sp8_S_contig10456.726.1|Name=mRNA_Ecto-sp8_S_contig10456.726.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10456:3452..3637- (Ectocarpus species8 EcLAC_412)back to top |