mRNA_Ecto-sp8_S_contig10456.726.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10456.726.1
Unique NamemRNA_Ecto-sp8_S_contig10456.726.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A6H5KLV6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.830e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
            +VHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR
Sbjct:  839 EVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 899          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.420e-29
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
            +VHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTS PLFVGSRRFPVR
Sbjct:  991 EVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSSPLFVGSRRFPVR 1051          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: B8C762_THAPS (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C762_THAPS)

HSP 1 Score: 81.3 bits (199), Expect = 5.920e-19
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPV 180
            +VHERSVDTD+LC   +RL+ + P LRLI+MSATL+AN+  +Y+G   PP+FVG+RRFP+
Sbjct:    4 EVHERSVDTDILCYLVRRLLASRPDLRLILMSATLAANMYQQYFGSHYPPIFVGARRFPI 63          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S4MMP8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMP8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-18
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
            +VHERSVDTD+LCL  +RL+ THPT+RL++MSAT++A L   Y+G   PP+FVG+RRFP++
Sbjct:  798 EVHERSVDTDILCLLCRRLLTTHPTIRLVLMSATMAAALYRSYFGTPEPPIFVGARRFPIK 858          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: K0RU78_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU78_THAOC)

HSP 1 Score: 85.9 bits (211), Expect = 4.180e-18
Identity = 35/61 (57.38%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
            +VHERSVDTD+LCL  +RL+ +HPT+RL++MSAT++A L  +Y+G+  PP+ VG+RRFP++
Sbjct:  791 EVHERSVDTDILCLLCRRLLNSHPTIRLVLMSATMAAELYQQYFGVPQPPIHVGARRFPIK 851          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S1NSJ8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NSJ8_9EUGL)

HSP 1 Score: 79.3 bits (194), Expect = 5.470e-17
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPV 180
            +VHERSVDTDLLC FA++L++ HP LRL++MSATL A++  +Y+ +  PPL VG R FP+
Sbjct:   44 EVHERSVDTDLLCCFARQLLQRHPNLRLVLMSATLQADVYQRYFDVGGPPLSVGCRAFPI 103          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S2SUV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUV2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.940e-16
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVG 162
            +VHERS+DTD+LCL A+RL+ +HPTLRLI+MSAT++A L  +Y+G+  PPLFVG
Sbjct:  205 EVHERSIDTDILCLLARRLLASHPTLRLILMSATIAAELHRQYFGVPEPPLFVG 258          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: B5Y583_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y583_PHATC)

HSP 1 Score: 78.2 bits (191), Expect = 2.140e-15
Identity = 34/61 (55.74%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVR 183
            +VHERSVDTD+LCL  +RL++ +  +RL++MSATL+A+L  +Y+  T PP+ VG+RRFPV+
Sbjct:  643 EVHERSVDTDILCLLCRRLLKVNQNIRLVLMSATLAASLYQEYFNTTEPPIKVGARRFPVK 703          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S2L2B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.410e-15
Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPV 180
            +VHERSVD+D+LCL  +RL+ +HPT+RL++MSATL+A+L S+Y+G   P + VG RRFP+
Sbjct:  447 EVHERSVDSDILCLLCRRLLHSHPTIRLVLMSATLAADLYSQYFGAPQP-IHVGVRRFPI 505          
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Match: A0A7S3JYC1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYC1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.590e-14
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRF 174
            +VHERSVD +++CL A+RL+ +HP LRLIVMSATL   LL+ Y+    P +FVG+RRF
Sbjct:  629 EVHERSVDAEVICLLARRLIHSHPNLRLIVMSATLCTELLADYFCTVEPHVFVGARRF 686          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10456.726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLV6_9PHAE2.830e-3098.36Helicase ATP-binding domain-containing protein n=1... [more]
D8LSM0_ECTSI3.420e-2996.72Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
B8C762_THAPS5.920e-1960.00Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7S4MMP8_9STRA1.200e-1860.66Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0RU78_THAOC4.180e-1857.38Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S1NSJ8_9EUGL5.470e-1758.33Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S2SUV2_9STRA3.940e-1664.81Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
B5Y583_PHATC2.140e-1555.74Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2L2B3_9STRA5.410e-1558.33Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S3JYC1_9STRA6.590e-1458.62Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10456contigEcto-sp8_S_contig10456:3452..3637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score116.3
Seed ortholog evalue5e-24
Seed eggNOG ortholog2880.D8LSM0
Preferred nameYTHDC2
Model size186
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.positive regulation of polysome binding
EggNOG OGsCOG1643@1,KOG0921@2759
EC3.6.4.13
Cds size186
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143144.4582212-CDS-Ecto-sp8_S_contig10456:3451..36371681143144.4582212-CDS-Ecto-sp8_S_contig10456:3451..3637Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10456 3452..3637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10456.726.1prot_Ecto-sp8_S_contig10456.726.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10456 3452..3637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10456.726.1

>prot_Ecto-sp8_S_contig10456.726.1 ID=prot_Ecto-sp8_S_contig10456.726.1|Name=mRNA_Ecto-sp8_S_contig10456.726.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=62bp
QVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPP
LFVGSRRFPVR*
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mRNA from alignment at Ecto-sp8_S_contig10456:3452..3637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10456.726.1 ID=mRNA_Ecto-sp8_S_contig10456.726.1|Name=mRNA_Ecto-sp8_S_contig10456.726.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10456:3452..3637- (Ectocarpus species8 EcLAC_412)
CAGGTGCACGAGCGATCCGTGGATACCGACCTCCTGTGCCTGTTCGCCAA GAGGCTGGTCGAAACCCACCCCACTCTCCGCCTCATCGTCATGAGCGCCA CCCTCTCGGCCAACCTCCTCAGCAAGTACTACGGACTCACGTCACCCCCT CTCTTCGTCGGGTCGAGGCGATTCCCCGTCAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10456:3452..3637-

>mRNA_Ecto-sp8_S_contig10456.726.1 ID=mRNA_Ecto-sp8_S_contig10456.726.1|Name=mRNA_Ecto-sp8_S_contig10456.726.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10456:3452..3637- (Ectocarpus species8 EcLAC_412)
CAGGTGCACGAGCGATCCGTGGATACCGACCTCCTGTGCCTGTTCGCCAA
GAGGCTGGTCGAAACCCACCCCACTCTCCGCCTCATCGTCATGAGCGCCA
CCCTCTCGGCCAACCTCCTCAGCAAGTACTACGGACTCACGTCACCCCCT
CTCTTCGTCGGGTCGAGGCGATTCCCCGTCAGGTAG
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