mRNA_Ecto-sp8_S_contig104548.724.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104548.724.1
Unique NamemRNA_Ecto-sp8_S_contig104548.724.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: D8LNX5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 4.480e-32
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:   16 NVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQ 216
             V A+LKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQ
Sbjct:  620 GVLAKLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQ 686
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: W4H654_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H654_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.800e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++    V AQL    EAT LVKEA+ +F+GTP EV+++VANSELAI+RGDF+ A+ +L +VP ESPAY++ Q+
Sbjct:  638 YIQMATVQAQLNNVGEATRLVKEALQVFKGTPQEVRVLVANSELAIKRGDFDNAIIMLNNVPQESPAYIKAQM 710
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: W4H8T4_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4H8T4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.850e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++    V AQL    EAT LVKEA+ +F+GTP EV+++VANSELAI+RGDF+ A+ +L +VP ESPAY++ Q+
Sbjct:  638 YIQMATVQAQLNNVGEATRLVKEALQVFKGTPQEVRVLVANSELAIKRGDFDNAIIMLNNVPQESPAYIKAQM 710
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: A0A485KXP9_9STRA (Aste57867_12996 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXP9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-18
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++    V +QL   AEAT LVKEA+ +F+GTP EV+++VANSELAI+RGDF+ A+ +L +VP ESPAY++ Q+
Sbjct:  637 YIQTAAVQSQLNNVAEATRLVKEALQVFKGTPQEVRVLVANSELAIKRGDFDNAIIMLNNVPQESPAYIKAQM 709
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: A0A1W0A8I9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8I9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.420e-17
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++   +V AQL   AEAT LVKEA+ +F+GT  EV+++VANSELAI+RGDF+ A+ +L  VP +SPAY++ Q+
Sbjct:  622 YIQLASVHAQLNNVAEATRLVKEALNVFKGTTQEVRVLVANSELAIKRGDFDNAIIMLNGVPQDSPAYIKAQM 694
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: A0A6G0XY77_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY77_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.300e-17
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++    V AQL    EAT LVKEA+  F+GT  EV+++VANSELAI+RGDF+ A+ +L +VP ESPAY++ Q+
Sbjct:  642 YIQMAAVQAQLNNVGEATRLVKEALQAFKGTSQEVRVLVANSELAIKRGDFDNAIIMLNNVPQESPAYIKAQM 714
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: A0A067D2Q1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2Q1_SAPPC)

HSP 1 Score: 82.0 bits (201), Expect = 1.570e-16
Identity = 37/73 (50.68%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++   +V AQL    EAT LVKEA+ +F+GT  EV+++VANSELAI+RGDF+ A+ +L  +P ESPA+++ Q+
Sbjct:  609 YIQLASVHAQLNNVGEATRLVKEALDVFKGTTQEVRVLVANSELAIKRGDFDNAIIMLNGIPQESPAFIKAQM 681
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: A0A0W8D2T9_PHYNI (Tetratricopeptide repeat protein 21B n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D2T9_PHYNI)

HSP 1 Score: 74.7 bits (182), Expect = 4.680e-15
Identity = 33/73 (45.21%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++    V +QL   +EAT+ V+EA+ +FRGT  EV++++ANSELAI+RGD++ A+ +L  VP  SPA+ + Q+
Sbjct:   32 YIHMAQVLSQLNDISEATKTVREALDVFRGTSQEVRVLIANSELAIKRGDYDAAIAMLSSVPVASPAFTKAQM 104
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: A0A0W8DWZ5_PHYNI (Tetratricopeptide repeat protein 21B n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DWZ5_PHYNI)

HSP 1 Score: 75.1 bits (183), Expect = 9.240e-15
Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++    V +QL   +EAT+ V+EA+ +FRGT  EV+++VANSELAI+RGD++ A+ +L  VP  SPA+ + Q+
Sbjct:   89 YIHMAQVLSQLNDISEATKTVREALDVFRGTSQEVRVLVANSELAIKRGDYDAAIAMLSSVPVASPAFTKAQM 161
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BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Match: K3X0X5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0X5_GLOUD)

HSP 1 Score: 76.6 bits (187), Expect = 1.220e-14
Identity = 34/73 (46.58%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGDFEKALKILGDVPPESPAYVRVQV 219
            ++    V +QL   AEAT++++EA+ +FRGT  EV+++VANSELAI+RGD++ A+ +L +VP  SPA+ + Q+
Sbjct:  658 YIQLAQVLSQLNDIAEATKIMREALQVFRGTTQEVRVLVANSELAIKRGDYDAAIVMLSNVPTTSPAFAKAQM 730
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104548.724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX5_ECTSI4.480e-3295.52Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
W4H654_9STRA7.800e-1954.79Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4H8T4_9STRA7.850e-1954.79Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A485KXP9_9STRA1.070e-1854.79Aste57867_12996 protein n=1 Tax=Aphanomyces stella... [more]
A0A1W0A8I9_9STRA2.420e-1753.42Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0XY77_9STRA3.300e-1753.42Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067D2Q1_SAPPC1.570e-1650.68Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A0W8D2T9_PHYNI4.680e-1545.21Tetratricopeptide repeat protein 21B n=2 Tax=Phyto... [more]
A0A0W8DWZ5_PHYNI9.240e-1546.58Tetratricopeptide repeat protein 21B n=1 Tax=Phyto... [more]
K3X0X5_GLOUD1.220e-1446.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104548contigEcto-sp8_S_contig104548:1..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score126.3
Seed ortholog evalue5.8e-27
Seed eggNOG ortholog2880.D8LNX5
Preferred nameTTC21B
Model size222
KEGG koko:K19673
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008589,GO:0009889,GO:0009953,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010646,GO:0010970,GO:0016043,GO:0019219,GO:0019222,GO:0021591,GO:0021798,GO:0021871,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030705,GO:0030900,GO:0030990,GO:0030991,GO:0031323,GO:0031326,GO:0031503,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035721,GO:0035735,GO:0042073,GO:0042995,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0048513,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903506,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGs28HZH@1,2QQAB@2759
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143144.2460036-CDS-Ecto-sp8_S_contig104548:0..1301681143144.2460036-CDS-Ecto-sp8_S_contig104548:0..130Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104548 1..130 -
1681143144.2617407-CDS-Ecto-sp8_S_contig104548:420..5121681143144.2617407-CDS-Ecto-sp8_S_contig104548:420..512Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104548 421..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104548.724.1prot_Ecto-sp8_S_contig104548.724.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104548 1..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104548.724.1

>prot_Ecto-sp8_S_contig104548.724.1 ID=prot_Ecto-sp8_S_contig104548.724.1|Name=mRNA_Ecto-sp8_S_contig104548.724.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=74bp
FLCRCNVTAQLKRTAEATELVKEAMAMFRGTPDEVQIVVANSELAIERGD
FEKALKILGDVPPESPAYVRVQV*
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mRNA from alignment at Ecto-sp8_S_contig104548:1..512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104548.724.1 ID=mRNA_Ecto-sp8_S_contig104548.724.1|Name=mRNA_Ecto-sp8_S_contig104548.724.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=512bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104548:1..512- (Ectocarpus species8 EcLAC_412)
TTCCTCTGTCGATGCAACGTTACCGCACAGCTCAAGAGGACGGCCGAAGC
AACAGAGCTGGTTAAGGAAGCCATGGCCATGTTCCGGGGCACGTGAGTAG
CGAAAGCCAACCTGGCGCTTGACCGAGGCCAGCTGAATTTCTATCAAAAT
GAAAAGGGGCCCCTGCGTATAATACAACACGTTTACACGTCTCTATTTAC
TCGCACCTTCTCCGACCTCTTGCCCTTTCCTTCATAATTGGCTGCATTGC
CAATTTGCAACGAACAATGAATGGTCTGTCACGCCCGTTGAGCCTCCTCA
ATCAATACGCGGGCTTGTTTCTCTTCCTTAGCGGCCCAACCCTATTATTC
CATACATGCCTCCGTTGCAACCCCCGTTACAGCCCTGACGAGGTTCAGAT
AGTGGTGGCCAACAGCGAGTTGGCGATAGAGCGGGGAGATTTCGAAAAGG
CCTTGAAAATCCTGGGAGACGTCCCGCCAGAATCGCCAGCCTATGTCAGG
GTTCAGGTATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104548:1..512-

>mRNA_Ecto-sp8_S_contig104548.724.1 ID=mRNA_Ecto-sp8_S_contig104548.724.1|Name=mRNA_Ecto-sp8_S_contig104548.724.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104548:1..512- (Ectocarpus species8 EcLAC_412)
TTCCTCTGTCGATGCAACGTTACCGCACAGCTCAAGAGGACGGCCGAAGC
AACAGAGCTGGTTAAGGAAGCCATGGCCATGTTCCGGGGCACCCCTGACG
AGGTTCAGATAGTGGTGGCCAACAGCGAGTTGGCGATAGAGCGGGGAGAT
TTCGAAAAGGCCTTGAAAATCCTGGGAGACGTCCCGCCAGAATCGCCAGC
CTATGTCAGGGTTCAGGTATAA
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