mRNA_Ecto-sp8_S_contig10452.719.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10452.719.1
Unique NamemRNA_Ecto-sp8_S_contig10452.719.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10452.719.1 vs. uniprot
Match: A0A6H5JNP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP0_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 6.060e-79
Identity = 144/161 (89.44%), Postives = 145/161 (90.06%), Query Frame = 1 
Query:    1 MAVSGAVRALVFALLVMFAVEAFVVPAPAALARNLGRPSNKQQLTPTPNTAATSSRSLTPARMSTYEQSSPEPXXXXXXXXXSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKVVNTQKDAVQLGWSYDASKPEW 483
            MAVSGAVRALVFALLV FAVEAFVVPAPAALARNLGRPSN QQLTPTPNTAATSSRSLT A            XXXXXXXXX EMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQE+VVNTQKDAVQLGWSYDASKPEW
Sbjct:    1 MAVSGAVRALVFALLVAFAVEAFVVPAPAALARNLGRPSNTQQLTPTPNTAATSSRSLTRAXXXXXXXXXXXXXXXXXXXXXPEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERVVNTQKDAVQLGWSYDASKPEW 161
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BLAST of mRNA_Ecto-sp8_S_contig10452.719.1 vs. uniprot
Match: D8LID7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID7_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.180e-54
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:  187 MSTYEQSSPEPXXXXXXXXXSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKVVNTQKDAVQLGWSYDASKPEW 483
            MSTYEQSSPEP         SEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKVVNTQKDAVQLGWSYDASKPEW
Sbjct:    1 MSTYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKVVNTQKDAVQLGWSYDASKPEW 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10452.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNP0_9PHAE6.060e-7989.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LID7_ECTSI2.180e-5490.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10452contigEcto-sp8_S_contig10452:1666..3721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size486
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionProtein of unknown function DUF2997
Ec32 orthologEc-18_004050.1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143144.0477262-CDS-Ecto-sp8_S_contig10452:1665..19891681143144.0477262-CDS-Ecto-sp8_S_contig10452:1665..1989Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10452 1666..1989 +
1681143144.0576384-CDS-Ecto-sp8_S_contig10452:2970..30811681143144.0576384-CDS-Ecto-sp8_S_contig10452:2970..3081Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10452 2971..3081 +
1681143144.0667143-CDS-Ecto-sp8_S_contig10452:3670..37211681143144.0667143-CDS-Ecto-sp8_S_contig10452:3670..3721Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10452 3671..3721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10452.719.1prot_Ecto-sp8_S_contig10452.719.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10452 1666..3721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10452.719.1

>prot_Ecto-sp8_S_contig10452.719.1 ID=prot_Ecto-sp8_S_contig10452.719.1|Name=mRNA_Ecto-sp8_S_contig10452.719.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=162bp
MAVSGAVRALVFALLVMFAVEAFVVPAPAALARNLGRPSNKQQLTPTPNT
AATSSRSLTPARMSTYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRI
LLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKVVNTQKDAVQL
GWSYDASKPEW*
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mRNA from alignment at Ecto-sp8_S_contig10452:1666..3721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10452.719.1 ID=mRNA_Ecto-sp8_S_contig10452.719.1|Name=mRNA_Ecto-sp8_S_contig10452.719.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2056bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10452:1666..3721+ (Ectocarpus species8 EcLAC_412)
ATGGCCGTTTCCGGTGCTGTCCGAGCCCTTGTCTTTGCATTACTCGTGAT
GTTCGCTGTCGAAGCGTTCGTTGTACCGGCTCCGGCGGCGCTGGCACGAA
ACCTGGGTAGACCGAGCAACAAGCAGCAGCTGACACCAACACCGAACACT
GCCGCAACATCATCACGTTCGCTCACCCCAGCTCGCATGTCAACGTACGA
GCAGTCGTCGCCGGAGCCGTCCGCCAGCGGAGAGATGAGCAGCTCTTCTG
AGATGGAGCTGCAAGAGCTGATTGTGGATTTCACGGACGATGGTCGGATT
TTGCTTGAGGTCAAGGGTGTCAAGGTGGGTTTCGGATTTTTGAATTGAAG
AAGAGATGGCTGACCGATTACACGTCATTCGGTCAACGCAGCCGAAGAGT
TACTGCAACACAGTAGAGACCTCCATTCTATGTACGAACAGAGATGGGGT
AACAGAGATGGGGTGATATGATGGGTAATCCACGGGGACCAAGCACCACG
TACTGGATAATAGACAGGAATAACTCACATACTTTGGTTTGGCCCCAGAT
ATCCTACACACACACACCGGAGTTTGCAACACTACAGCTGTTTGTGCTGG
ACATCGGATTTTTTTTTATTTTCGGCCAAAATTGCGGTACATTGGGAAAA
ATAATTACACACACAGAAAGACTACCCATTCGAGATATACCGGAAGGTTG
CGAGTCAGCGCACAGGGGTGCGAACCATTTTCAAAGCGTAATTTCCCCCA
CAACGAGGAGGTTATCACTGTCGAAAAGGGCGGTTTTGGAAATATCTCAT
CGAGGGCTTTCCTGAGAAGTATCAGTTGGCACTCGCACCCTACTGGTTGT
GGAGAAATTACGCGTTGAACATCCATCGCACCCCTGTGCGCTGACTCGCA
ACCTTACGGTCCCACGTTCGATACATGTTCCGGTCGTTTCTCTGTACACG
ATATTTTTTGTTTCCGAACAACCAGGACGTTACTGCTTTTTGTTTGTGCT
AAAGTACATCGCGACGCCAGCGGGAGGTAGGACTAAAGGTTGCAATTTTT
CTGGGTCTTCGAGTGAAATACAACACCTCTGTACAGAGGAAAAATTGGTT
AATGTTTCAATGTTAGCGGGTTTTTTTTTGTCATGTCGACGCCACAAACA
GGGTATACTGCATCCACGCAAACGACAGAGACTTGAAGTCGAAGATCTCT
TGACAGCCGGATCCATCGCTCCTCTCACAGCAGTCGTCATTGAACAACCC
CACGGACACGTTGCACCTCGCCATACACCCATTCATGCTTTATCACGTGT
CGCAGGGTAGCGAATGCAGGGTGATCACGGAGGATCTCATCAAAGCTCTC
GGGGACGTGATCACGACTGAGAACACCGAGGAGTACTTCCAAGAGAAGGT
CGTCAACACGCAGAAGGTGAAGCGTCCGTGCTACAGCTTAACTTCGTATG
ACCTTAAGCCTCACAGAGAGCGACACACCGGGCTTGTGCGTGTTGTCAAG
CAAGAATTGATTTTTCTCAACTTTAATTACTCAACTTTGTGTGAAATTCA
TTAAGTGAGACTCATGATGGGATGGCACGGGCGAAAATCTAGTTTGACGG
CCTCGCTGTGGCTGTTCGTGCTCAACTGATTGGCTGATGGGCATCCGTGC
CCAGGATGGAAGCGTTGAGTTCCAAGAGCACGTTAGCTCCATGCACGTAC
CTAGTAGTCCTCGTTTCGCGGATAACGGTATGCTACAGCGGCGATTCAAC
CTCCGTCGCTCGGGCACACGCGATGGGTTTGATGATGTGTTGCTGCGTCG
GAAATGATTCTCGAAAGTCGTAGGGCCTACACAACCGTCAGTGCCGCGGT
TATATTGTCGTGTGAACGACTTCTAACAAATCGTTCAGCAAATGGTTACT
TTTGGAAGCACACACGTTGATGGACTCTTCACGTGCAGTCTCAGCTGAAG
TACCATCCCGCACCCCGCCTTTCCGCCCTTCCGCCTTTCCGCCCTTCCTG
AGCAGGACGCGGTTCAGCTCGGATGGTCTTACGACGCCAGCAAGCCTGAG
TGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10452:1666..3721+

>mRNA_Ecto-sp8_S_contig10452.719.1 ID=mRNA_Ecto-sp8_S_contig10452.719.1|Name=mRNA_Ecto-sp8_S_contig10452.719.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10452:1666..3721+ (Ectocarpus species8 EcLAC_412)
ATGGCCGTTTCCGGTGCTGTCCGAGCCCTTGTCTTTGCATTACTCGTGAT
GTTCGCTGTCGAAGCGTTCGTTGTACCGGCTCCGGCGGCGCTGGCACGAA
ACCTGGGTAGACCGAGCAACAAGCAGCAGCTGACACCAACACCGAACACT
GCCGCAACATCATCACGTTCGCTCACCCCAGCTCGCATGTCAACGTACGA
GCAGTCGTCGCCGGAGCCGTCCGCCAGCGGAGAGATGAGCAGCTCTTCTG
AGATGGAGCTGCAAGAGCTGATTGTGGATTTCACGGACGATGGTCGGATT
TTGCTTGAGGTCAAGGGTGTCAAGGGTAGCGAATGCAGGGTGATCACGGA
GGATCTCATCAAAGCTCTCGGGGACGTGATCACGACTGAGAACACCGAGG
AGTACTTCCAAGAGAAGGTCGTCAACACGCAGAAGGACGCGGTTCAGCTC
GGATGGTCTTACGACGCCAGCAAGCCTGAGTGGTGA
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