mRNA_Ecto-sp8_S_contig104323.693.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104323.693.1
Unique NamemRNA_Ecto-sp8_S_contig104323.693.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: UPI000C771D87 (voltage-dependent anion-selective channel-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C771D87)

HSP 1 Score: 208 bits (529), Expect = 7.750e-65
Identity = 97/152 (63.82%), Postives = 128/152 (84.21%), Query Frame = 1
Query:    1 NLASSPVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSSFGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEMEA 456
            NLA++P +N++ SVGHGA+++GY T+FD+ KSA+TK++ A+ Y   + +LH T  D K FGGGIY + +P LETGV+ S+A+GGS++FG+GCKY LGPDAS+RAKV+N+S+VGLSYQQKLRDG+TVT+S+NIDG KLN PGHKLGL LEM A
Sbjct:  128 NLAANPAINLNASVGHGAWAVGYATSFDTAKSAITKNHFAVGYATKEAVLHCTCNDGKTFGGGIYHRINPSLETGVSISAALGGSAAFGVGCKYDLGPDASIRAKVDNSSKVGLSYQQKLRDGITVTLSSNIDGTKLNAPGHKLGLALEMSA 279          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A0U2VBK7_ACAPC (Mitochondrial porin n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2VBK7_ACAPC)

HSP 1 Score: 194 bits (493), Expect = 2.230e-59
Identity = 93/151 (61.59%), Postives = 122/151 (80.79%), Query Frame = 1
Query:    4 LASSPVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSSFGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEMEA 456
            L +SPV+N+S SVGHG ++LGY TAFD+GK+A+ K++LAL Y+AGDM+ H TA D+K+FGGGIY K  P LETGV+ +++  G++ FGIGCKY LG DAS+RAKV+N+S+VGLSYQQ LR G+T+T S  +D  KLN+PGHK G+ LEM A
Sbjct:  130 LTASPVINMSASVGHGPWALGYSTAFDTGKAAVVKNSLALGYSAGDMVCHVTANDAKMFGGGIYHKVRPGLETGVSVNTSAAGNTDFGIGCKYDLGSDASIRAKVDNSSKVGLSYQQVLRPGITMTASVLMDATKLNQPGHKFGMSLEMSA 280          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A7D9D2S2_9CUCU (Voltage-dependent anion-selective channel (Fragment) n=1 Tax=Bitoma cylindrica TaxID=1661817 RepID=A0A7D9D2S2_9CUCU)

HSP 1 Score: 164 bits (415), Expect = 1.350e-47
Identity = 83/150 (55.33%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    7 ASSPVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVT-ASSAVGGSSSFGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEME 453
            AS P++  S  +GH  +  GYQTAFD+ KS LTK+N AL +  GD +LH    D + FGG IY K SPKLETG+  A SA   ++ FGIG  Y+L  DASLRAK+NN+SQ+GL YQQ+LR+G+T+T+SA IDG   N  GHK+GL LE+E
Sbjct:  132 ASGPIIQASGVIGHQGWLAGYQTAFDTSKSKLTKNNFALGFTTGDFVLHTNVDDGQEFGGSIYQKISPKLETGIQLAWSAGSNNTKFGIGAGYTLDQDASLRAKINNSSQIGLGYQQRLREGITLTLSALIDGKNFNNGGHKIGLALELE 281          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A7D9D3S5_9COLE (Voltage-dependent anion-selective channel (Fragment) n=1 Tax=Xylobiops basilaris TaxID=1661920 RepID=A0A7D9D3S5_9COLE)

HSP 1 Score: 163 bits (412), Expect = 3.710e-47
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 NLASSPVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSS-FGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEME 453
            +LA+ P+++ S  VG+  +  GYQTAFD+ KS LTK+N AL ++ GD ILH    D + FGG IY + SPKLETG+  + + G +++ FGIG KY L  DAS+RAKVNN+SQ+GL YQQ+LRDG+ +T+SA IDG   N  GHK+GL LE+E
Sbjct:  129 DLANGPLISASAVVGYQGWLAGYQTAFDTQKSKLTKNNFALGFSTGDFILHTNVDDGQEFGGSIYQRVSPKLETGIQLAWSAGSNNTRFGIGAKYDLDKDASIRAKVNNSSQIGLGYQQRLRDGILLTLSALIDGKNFNNGGHKIGLALELE 280          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: D6WWM0_TRICA (Voltage-dependent anion-selective channel-like Protein n=6 Tax=Tenebrionidae TaxID=7065 RepID=D6WWM0_TRICA)

HSP 1 Score: 164 bits (415), Expect = 7.280e-47
Identity = 84/151 (55.63%), Postives = 108/151 (71.52%), Query Frame = 1
Query:    7 ASSPVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVT-ASSAVGGSSSFGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEMEA 456
            +S P++  +  VGH  +  GYQTAFD+ KS LTK+N AL ++ GD ILH    D + FGG IY K SPKLETG+  A SA   ++ FGIG KY L  DA++RAKVNN+SQ+GL YQQ+LR+GVT+T+SA IDG   N  GHK+GL +E+EA
Sbjct:  197 SSGPLIQAAAVVGHQGWLAGYQTAFDTQKSKLTKNNFALGFSTGDFILHTNVDDGQEFGGSIYQKLSPKLETGIQLAWSAGSNNTKFGIGAKYDLDQDAAIRAKVNNSSQIGLGYQQRLREGVTLTLSALIDGKNFNNGGHKIGLAVELEA 347          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A7J7A1I8_9COLE (Uncharacterized protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7A1I8_9COLE)

HSP 1 Score: 162 bits (410), Expect = 7.830e-47
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:   16 PVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSS-FGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEMEA 456
            P+++ S  +G+  +  GYQ AFD+ ++ LTK+N AL ++ GD ILH    D   FGG IY K SP+LETG+  S + G + + FGIG KY+L PDAS+RAKVNNASQVGL YQQ+LRDGVT+T+S  IDG   N  GHK+GL LE+EA
Sbjct:  135 PIISGSGVIGYQGWLAGYQAAFDTQRTELTKNNFALGFSTGDFILHTNVDDGHDFGGSIYQKISPQLETGIQLSWSAGSNDTKFGIGAKYNLDPDASIRAKVNNASQVGLGYQQRLRDGVTITLSTLIDGKNFNNGGHKIGLALELEA 282          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A7D9H544_9COLE (Voltage-dependent anion-selective channel (Fragment) n=1 Tax=Hydroscapha redfordi TaxID=931173 RepID=A0A7D9H544_9COLE)

HSP 1 Score: 161 bits (408), Expect = 1.520e-46
Identity = 83/147 (56.46%), Postives = 104/147 (70.75%), Query Frame = 1
Query:   16 PVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTAS-SAVGGSSSFGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEME 453
            P++  +  VG+  +  GYQTAFDS KS LTK+N AL ++ GD ILH    D + FGG I+ K SP+LET V+ + S+    + FGIG KY L  +AS+RAKVNNASQ+GL YQQKLRDG+T+T+SA IDG   N  GHKLGL LEME
Sbjct:  135 PLIEAAAVVGYEGWLAGYQTAFDSQKSKLTKNNFALGFSTGDFILHTNVDDGQEFGGSIFQKISPRLETAVSLNWSSASNDTKFGIGAKYELDKEASIRAKVNNASQIGLGYQQKLRDGITLTLSAMIDGKNFNAGGHKLGLALEME 281          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A7D9D4L1_9COLE (Voltage-dependent anion-selective channel (Fragment) n=1 Tax=Hydrochara caraboides TaxID=1208885 RepID=A0A7D9D4L1_9COLE)

HSP 1 Score: 161 bits (408), Expect = 1.570e-46
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 1
Query:   16 PVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSS-FGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEMEA 456
            P++  S  VG+  +  GYQTAFDS KS LTK+N AL ++ GD ILH    D + FGG IY + SP+LETG+  + + G +++ FGIG KY L  DA +RAKVNNASQVGL YQQ+LRDG+T+T+SA IDG   N  GHK+GL LE+EA
Sbjct:  135 PLIGGSLVVGYQGWLAGYQTAFDSEKSKLTKNNFALGFSTGDFILHTNVDDGQEFGGSIYQRVSPRLETGIQLAWSAGSNNTRFGIGAKYDLDQDACVRAKVNNASQVGLGYQQRLRDGITLTLSALIDGKNFNNGGHKIGLALELEA 282          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A7D9D323_CETAU (Voltage-dependent anion-selective channel (Fragment) n=2 Tax=Scarabaeidae TaxID=7055 RepID=A0A7D9D323_CETAU)

HSP 1 Score: 160 bits (406), Expect = 3.050e-46
Identity = 81/147 (55.10%), Postives = 106/147 (72.11%), Query Frame = 1
Query:   16 PVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSS-FGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEME 453
            PV++ S  +G+  +  GYQTAFD+    LTK+N AL ++ GD+ILH+   D + FGG IY + SPKLETGV  + + G S++ FGIG KY L  DAS+RAKVNN SQ+GL YQQ+LRDG+T+T+SA IDG   N  GHK+GL LE+E
Sbjct:  135 PVIHASAVIGYQGWLAGYQTAFDTQNKKLTKNNFALGFSTGDLILHSNVDDGQEFGGSIYQRISPKLETGVQLAWSSGSSNTRFGIGAKYDLDRDASIRAKVNNTSQIGLGYQQRLRDGITLTLSALIDGKNFNSGGHKIGLALELE 281          
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Match: A0A6M2DKK1_9NEOP (Putative voltage-dependent anion-selective channel isoform x1 (Fragment) n=2 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DKK1_9NEOP)

HSP 1 Score: 160 bits (406), Expect = 3.210e-46
Identity = 81/150 (54.00%), Postives = 105/150 (70.00%), Query Frame = 1
Query:   10 SSPVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMILHATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSS-FGIGCKYSLGPDASLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEMEA 456
            S P++N S  VG+  +  GYQT FDS  S +TK+N AL ++ GD ILH    D + FGG IY K S KL+TG+  + + G +++ FGIGCKY+L  DA +RAKVNN SQ+GL YQQKLRDG+T+T+SA IDG   N  GHK+G  LE+EA
Sbjct:  134 SGPLINASAVVGYQGWLAGYQTGFDSENSKVTKNNFALGFSTGDFILHTNVDDGQEFGGSIYQKVSSKLDTGIQLNWSAGANNTRFGIGCKYNLDNDAVVRAKVNNVSQIGLGYQQKLRDGITLTLSAQIDGKNFNSGGHKVGAALELEA 283          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104323.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C771D877.750e-6563.82voltage-dependent anion-selective channel-like n=1... [more]
A0A0U2VBK7_ACAPC2.230e-5961.59Mitochondrial porin n=1 Tax=Acartia pacifica TaxID... [more]
A0A7D9D2S2_9CUCU1.350e-4755.33Voltage-dependent anion-selective channel (Fragmen... [more]
A0A7D9D3S5_9COLE3.710e-4753.95Voltage-dependent anion-selective channel (Fragmen... [more]
D6WWM0_TRICA7.280e-4755.63Voltage-dependent anion-selective channel-like Pro... [more]
A0A7J7A1I8_9COLE7.830e-4755.41Uncharacterized protein n=1 Tax=Lamprigera yunnana... [more]
A0A7D9H544_9COLE1.520e-4656.46Voltage-dependent anion-selective channel (Fragmen... [more]
A0A7D9D4L1_9COLE1.570e-4656.08Voltage-dependent anion-selective channel (Fragmen... [more]
A0A7D9D323_CETAU3.050e-4655.10Voltage-dependent anion-selective channel (Fragmen... [more]
A0A6M2DKK1_9NEOP3.210e-4654.00Putative voltage-dependent anion-selective channel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104323contigEcto-sp8_S_contig104323:63..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start0
Seed ortholog score162.2
Seed ortholog evalue2e-37
Seed eggNOG ortholog7070.TC006408-PA
Preferred nameporin
Model size459
KEGG koko:K15040
KEGG TC1.B.8.1
KEGG Pathwayko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05166,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005261,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006839,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0007602,GO:0008150,GO:0008308,GO:0008324,GO:0008509,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009653,GO:0009987,GO:0015075,GO:0015103,GO:0015267,GO:0015288,GO:0015318,GO:0015698,GO:0016006,GO:0016020,GO:0016043,GO:0019867,GO:0019953,GO:0022412,GO:0022414,GO:0022803,GO:0022829,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023052,GO:0030154,GO:0030382,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051606,GO:0051704,GO:0051716,GO:0055085,GO:0065007,GO:0071840,GO:0098588,GO:0098655,GO:0098656,GO:0098805
Exons1
EggNOG free text desc.Voltage-gated anion channel activity. It is involved in the biological process described with regulation of anion transport
EggNOG OGs38G4B@33154,3BA0A@33208,3CRFW@33213,3SHAY@50557,41XPU@6656,KOG3126@1,KOG3126@2759
Cds size459
COG Functional cat.P
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143142.0402076-CDS-Ecto-sp8_S_contig104323:62..5211681143142.0402076-CDS-Ecto-sp8_S_contig104323:62..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104323 63..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104323.693.1prot_Ecto-sp8_S_contig104323.693.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104323 63..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104323.693.1

>prot_Ecto-sp8_S_contig104323.693.1 ID=prot_Ecto-sp8_S_contig104323.693.1|Name=mRNA_Ecto-sp8_S_contig104323.693.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=153bp
NLASSPVVNISTSVGHGAYSLGYQTAFDSGKSALTKHNLALAYNAGDMIL
HATATDSKVFGGGIYLKNSPKLETGVTASSAVGGSSSFGIGCKYSLGPDA
SLRAKVNNASQVGLSYQQKLRDGVTVTMSANIDGNKLNEPGHKLGLCLEM
EA*
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mRNA from alignment at Ecto-sp8_S_contig104323:63..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104323.693.1 ID=mRNA_Ecto-sp8_S_contig104323.693.1|Name=mRNA_Ecto-sp8_S_contig104323.693.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104323:63..521- (Ectocarpus species8 EcLAC_412)
AACCTGGCCAGCAGCCCTGTGGTGAACATCTCCACCTCTGTGGGGCACGG AGCTTACTCCCTGGGGTACCAGACTGCCTTCGACTCTGGCAAGTCTGCCC TCACCAAGCACAACCTGGCCCTGGCCTACAACGCAGGGGACATGATCCTC CACGCCACCGCCACTGACTCCAAGGTGTTTGGAGGAGGAATCTACCTGAA GAACAGCCCCAAGCTTGAGACTGGGGTGACTGCCTCCTCTGCCGTGGGAG GATCCTCTAGTTTTGGTATTGGCTGCAAATACTCCCTTGGACCAGATGCT AGCTTGAGAGCAAAGGTTAACAACGCCAGTCAGGTGGGACTCAGCTACCA GCAGAAGCTGAGGGACGGGGTCACCGTCACCATGTCCGCCAACATCGACG GGAACAAGCTGAACGAGCCTGGGCACAAGCTTGGTCTCTGCTTGGAAATG GAGGCTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104323:63..521-

>mRNA_Ecto-sp8_S_contig104323.693.1 ID=mRNA_Ecto-sp8_S_contig104323.693.1|Name=mRNA_Ecto-sp8_S_contig104323.693.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104323:63..521- (Ectocarpus species8 EcLAC_412)
AACCTGGCCAGCAGCCCTGTGGTGAACATCTCCACCTCTGTGGGGCACGG
AGCTTACTCCCTGGGGTACCAGACTGCCTTCGACTCTGGCAAGTCTGCCC
TCACCAAGCACAACCTGGCCCTGGCCTACAACGCAGGGGACATGATCCTC
CACGCCACCGCCACTGACTCCAAGGTGTTTGGAGGAGGAATCTACCTGAA
GAACAGCCCCAAGCTTGAGACTGGGGTGACTGCCTCCTCTGCCGTGGGAG
GATCCTCTAGTTTTGGTATTGGCTGCAAATACTCCCTTGGACCAGATGCT
AGCTTGAGAGCAAAGGTTAACAACGCCAGTCAGGTGGGACTCAGCTACCA
GCAGAAGCTGAGGGACGGGGTCACCGTCACCATGTCCGCCAACATCGACG
GGAACAAGCTGAACGAGCCTGGGCACAAGCTTGGTCTCTGCTTGGAAATG
GAGGCTTAG
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