mRNA_Ecto-sp8_S_contig104299.687.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104299.687.1
Unique NamemRNA_Ecto-sp8_S_contig104299.687.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104299.687.1 vs. uniprot
Match: D7G573_ECTSI (GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G573_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.560e-22
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:   16 QAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQLPEQADVGPASARS 162
            QAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQLPEQA+VGPASARS
Sbjct:  183 QAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQLPEQANVGPASARS 231
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104299.687.1 vs. uniprot
Match: A0A6H5KQY7_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.270e-21
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:   16 QAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQLPEQADVGPASARS 162
            QAFSEMDFN DGEVSFDEFVRWYSMSTALDEKPQQLP QADVGPASARS
Sbjct:  256 QAFSEMDFNRDGEVSFDEFVRWYSMSTALDEKPQQLPVQADVGPASARS 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104299.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G573_ECTSI2.560e-2297.96GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KQY7_9PHAE2.270e-2195.92EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104299contigEcto-sp8_S_contig104299:26..187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score91.7
Seed ortholog evalue9.4e-17
Seed eggNOG ortholog2880.D7G573
Model size162
KEGG rclassRC00002,RC00078
KEGG koko:K00951
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.HD domain containing 3
EggNOG OGsCOG0317@1,KOG1157@2759
EC2.7.6.5
Cds size132
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.55129-CDS-Ecto-sp8_S_contig104299:25..1571681143141.55129-CDS-Ecto-sp8_S_contig104299:25..157Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104299 26..157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.559809-UTR-Ecto-sp8_S_contig104299:157..1871681143141.559809-UTR-Ecto-sp8_S_contig104299:157..187Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig104299 158..187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104299.687.1prot_Ecto-sp8_S_contig104299.687.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104299 26..157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104299.687.1

>prot_Ecto-sp8_S_contig104299.687.1 ID=prot_Ecto-sp8_S_contig104299.687.1|Name=mRNA_Ecto-sp8_S_contig104299.687.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=44bp
MDFNSDGEVSFDEFVRWYSMSTALDEKPQQLPEQADVGPASARS
back to top

mRNA from alignment at Ecto-sp8_S_contig104299:26..187-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104299.687.1 ID=mRNA_Ecto-sp8_S_contig104299.687.1|Name=mRNA_Ecto-sp8_S_contig104299.687.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104299:26..187- (Ectocarpus species8 EcLAC_412)
CTTGTCACCTCGGATCAGGCGTTCTCGGAAATGGACTTTAACAGTGACGG
CGAGGTGTCCTTTGACGAGTTCGTGCGGTGGTATTCCATGAGCACCGCCC
TGGATGAGAAGCCCCAACAATTGCCCGAGCAGGCCGACGTCGGACCCGCC
TCCGCCAGGTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104299:26..187-

>mRNA_Ecto-sp8_S_contig104299.687.1 ID=mRNA_Ecto-sp8_S_contig104299.687.1|Name=mRNA_Ecto-sp8_S_contig104299.687.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104299:26..187- (Ectocarpus species8 EcLAC_412)
ATGGACTTTAACAGTGACGGCGAGGTGTCCTTTGACGAGTTCGTGCGGTG
GTATTCCATGAGCACCGCCCTGGATGAGAAGCCCCAACAATTGCCCGAGC
AGGCCGACGTCGGACCCGCCTCCGCCAGGTCG
back to top