mRNA_Ecto-sp8_S_contig10429.686.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10429.686.1
Unique NamemRNA_Ecto-sp8_S_contig10429.686.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: D8LR46_ECTSI (Integrin alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR46_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 8.950e-54
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG
Sbjct:   31 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 128
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: UPI00196A51B1 (FG-GAP repeat protein n=1 Tax=Caulobacter sp. SLTY TaxID=2683262 RepID=UPI00196A51B1)

HSP 1 Score: 96.3 bits (238), Expect = 4.100e-21
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGES---PDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            L  LDGT+GFR+  E  + + G S+S  GD+N DGF D+I+G +   PD    AGA+YVVFGS++  A +LD+SALDGTNGF+I G    D +G AV GAG
Sbjct:  289 LSSLDGTNGFRINGEADSDQSGNSLSAAGDINGDGFGDLIIGAASADPDGVFGAGASYVVFGSDAGFAASLDLSALDGTNGFRISGVANADQSGRAVAGAG 389
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: A0A2A5ESG2_9HYPH (Cadherin domain-containing protein (Fragment) n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ESG2_9HYPH)

HSP 1 Score: 94.4 bits (233), Expect = 1.960e-20
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE-SPDST-STAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            L  L+GTDGFR+  + +    GYSVSG GDVNNDGF+D+I+G   PD   +T+G+AYVVFG  S    +L++S LDGTNGF+++G  A D AG++V  AG
Sbjct:  271 LSTLNGTDGFRIEGDEAGDLAGYSVSGAGDVNNDGFDDLIIGAIGPDHNGTTSGSAYVVFGKASGFGSSLNLSTLDGTNGFRLDGAAADDRAGSSVSAAG 370
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: A0A2E6QIR2_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QIR2_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 2.010e-20
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:   10 LDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE-SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            LDG++GF +T   +TG+LGYSV+  GDVN DG  D+++GE   D T+ AG A+V+FGS    A ++D+SALDGT+GF IEG   G FAG +V  AG
Sbjct: 1218 LDGSNGFTMTGSIATGKLGYSVNAAGDVNGDGIADIVVGEYRADGTAYAGRAHVIFGSTGGFASSVDLSALDGTDGFTIEGFRDGGFAGYSVSSAG 1313
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: A0A842HVK4_9SPHN (FG-GAP repeat protein n=1 Tax=Parasphingopyxis marina TaxID=2761622 RepID=A0A842HVK4_9SPHN)

HSP 1 Score: 92.0 bits (227), Expect = 1.250e-19
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            L  LDGT+GFR+    +    G+SVS  GDVN DGF+D+I+G     PD  S AG +YVVFGS      +LD++ LDGTNGF+I G +A D +GT+V  AG
Sbjct:  397 LATLDGTNGFRIDGIDAQDNSGFSVSSAGDVNGDGFDDIIIGARGADPDGNSFAGESYVVFGSGGGFTASLDLATLDGTNGFRINGVEAFDASGTSVSAAG 497
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: A0A6J4PLY3_9RHOB (RTX toxins and related Ca2+-binding proteins (Fragment) n=1 Tax=uncultured Rubellimicrobium sp. TaxID=543078 RepID=A0A6J4PLY3_9RHOB)

HSP 1 Score: 91.3 bits (225), Expect = 1.350e-19
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE--SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            LG LDGT+GFR+    +  R+G+SV   GDVN DGF+D+I+G   +  + S + AAYVVFG++   A N++V  LDGTNGF++EG  AGD AG +V  AG
Sbjct:  293 LGSLDGTNGFRLDGVAAGDRVGWSVDSAGDVNGDGFDDIIVGARYADPNGSDSSAAYVVFGADGGFAANVNVGDLDGTNGFRLEGAAAGDNAGWSVASAG 392
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: UPI001F22F6D2 (integrin alpha n=1 Tax=Algimonas arctica TaxID=1479486 RepID=UPI001F22F6D2)

HSP 1 Score: 91.3 bits (225), Expect = 2.410e-19
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFG-SESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            L  LDGT+GFR+    +  + GYSVS  GDVN DGF+D+I+G     P+  S AG +YVVFG + S +   LD+S LDGTNGF+I G D GDF+G +V  AG
Sbjct: 1676 LSTLDGTNGFRIDGIDAYDQSGYSVSSAGDVNGDGFDDLIIGARGGDPNGDSDAGESYVVFGGAASVAGGALDLSTLDGTNGFRINGIDVGDFSGFSVSSAG 1777
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: A0A1I2A5I5_9PROT (FG-GAP repeat-containing protein n=1 Tax=Nitrosomonas sp. Nm166 TaxID=1881054 RepID=A0A1I2A5I5_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 4.250e-19
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGES--PDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            L  LDG++GFR+  E +  R GYSVS  GDVN DGF+DVI+G +    + + +GA+YVVFG  S     LD+S+LDG+NGF+++G  AGD +GT+V  AG
Sbjct:  283 LASLDGSNGFRLDGETANDRSGYSVSNAGDVNGDGFDDVIVGAAFADPNGAFSGASYVVFGKASGFDAALDLSSLDGSNGFRLDGEAAGDQSGTSVSNAG 382
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: A0A317HNT9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317HNT9_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 4.430e-19
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE--SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            L  L+GT GF+++   +  + G+SV+  GDVN DGF DVI+G   +    S++GA+YV+FG  S  A N+D+S+LDGTNGFKI G  AGD +GT+V  AG
Sbjct:  868 LSSLNGTTGFKLSGAAAGDQAGFSVASAGDVNGDGFADVIVGARYADPHGSSSGASYVIFGKASGFAANIDLSSLDGTNGFKISGAAAGDASGTSVAAAG 967
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BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Match: A0A7C7GL88_9FLAO (Flagellin_N domain-containing protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7GL88_9FLAO)

HSP 1 Score: 89.7 bits (221), Expect = 7.230e-19
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGE---SPDSTSTAGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG 294
            L  LDG++GFR+    +    G SVS  GDVNNDG++DVI+G     PD  S+AG +YVVFG  S    +LD+S+LDG+NGF+++G DAGD +G +V  AG
Sbjct:  177 LSSLDGSNGFRLDGVDAGDWSGGSVSSAGDVNNDGYDDVIIGAYTADPDGKSSAGESYVVFGKASGWNASLDLSSLDGSNGFRLDGVDAGDNSGKSVSNAG 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10429.686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR46_ECTSI8.950e-54100.00Integrin alpha n=1 Tax=Ectocarpus siliculosus TaxI... [more]
UPI00196A51B14.100e-2152.48FG-GAP repeat protein n=1 Tax=Caulobacter sp. SLTY... [more]
A0A2A5ESG2_9HYPH1.960e-2053.00Cadherin domain-containing protein (Fragment) n=1 ... [more]
A0A2E6QIR2_9PROT2.010e-2053.13Uncharacterized protein (Fragment) n=1 Tax=Rhodosp... [more]
A0A842HVK4_9SPHN1.250e-1950.50FG-GAP repeat protein n=1 Tax=Parasphingopyxis mar... [more]
A0A6J4PLY3_9RHOB1.350e-1951.00RTX toxins and related Ca2+-binding proteins (Frag... [more]
UPI001F22F6D22.410e-1951.96integrin alpha n=1 Tax=Algimonas arctica TaxID=147... [more]
A0A1I2A5I5_9PROT4.250e-1951.00FG-GAP repeat-containing protein n=1 Tax=Nitrosomo... [more]
A0A317HNT9_9PROT4.430e-1950.00Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7C7GL88_9FLAO7.230e-1950.50Flagellin_N domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10429contigEcto-sp8_S_contig10429:5766..6836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score190.7
Seed ortholog evalue3.3e-46
Seed eggNOG ortholog2880.D8LR46
Model size294
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.integrin-mediated signaling pathway
EggNOG OGsKOG3637@1,KOG3637@2759
Cds size294
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.5206363-CDS-Ecto-sp8_S_contig10429:5765..58521681143141.5206363-CDS-Ecto-sp8_S_contig10429:5765..5852Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10429 5766..5852 +
1681143141.5290391-CDS-Ecto-sp8_S_contig10429:6629..68361681143141.5290391-CDS-Ecto-sp8_S_contig10429:6629..6836Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10429 6630..6836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10429.686.1prot_Ecto-sp8_S_contig10429.686.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10429 5766..6836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10429.686.1

>prot_Ecto-sp8_S_contig10429.686.1 ID=prot_Ecto-sp8_S_contig10429.686.1|Name=mRNA_Ecto-sp8_S_contig10429.686.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=98bp
LGLLDGTDGFRVTAEFSTGRLGYSVSGVGDVNNDGFNDVILGESPDSTST
AGAAYVVFGSESFSALNLDVSALDGTNGFKIEGTDAGDFAGTAVCGAG
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mRNA from alignment at Ecto-sp8_S_contig10429:5766..6836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10429.686.1 ID=mRNA_Ecto-sp8_S_contig10429.686.1|Name=mRNA_Ecto-sp8_S_contig10429.686.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1071bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10429:5766..6836+ (Ectocarpus species8 EcLAC_412)
TTGGGTCTGCTGGACGGCACGGACGGATTTCGGGTGACCGCCGAGTTTTC
GACGGGCAGGCTTGGCTACTCAGTTTCCGGAGTTGGGGTGAGATTGTCAT
AGAGCACGGAACGAATTACCACACACGTAAAGACAAGCTTCTACAGCAGT
ATTCTATGGCATGAAGCACAAATACATACGCAGCTTCCCTCTGGTTGAAG
GTAGACTGACTACTGCTGTTGTTCCTGTGCGTAGACCGCGATGTAGTCTA
TAGTCAAGATGATAGACAGATACTCTTCGTAGCTCCTTACAAAGTAGGTG
ACGAAGCAGCCGCTGTACAGCTTATGTTGTAGTTCTCTCTCAACATGATC
TACTCGGACCAGGGTGTACATTGTTGTACATATGCATAGGAAGCACCGTC
TGGTTTTCTCGGTGTTGGTAATGTTGGACGACACGTTTCGTCTGTTGCTC
TGGGTGTTCTTTGAGAAATGCAGTGTGCTATTGTCAAGGACTAGGTTGAA
ACATTGAGATAAAGGGTGCACTGTCAGCTCTTATCGGTTGCAATATACGA
TTGGAAGTCGTTTTGACAATATAACTGATGCCTTCGGTACTTGTGGAGGA
TATCGTGGCTTCCAGACTTCTTCGTTATCACCTCCAGAAAGTCTGTCTCT
GACACTTGTCTACAGAGTACAGTTTGTGTAACAGAGTGTTTGGGTCTTGT
CAATGTCCAATGCCCTTGATCAATTCCATTCCAACGGTTAACCTAAATTC
GATCGGGTTTGTGACCCAATCTCCTTGCTAATCACAGTATGTAACATCGA
AGGTACAAATCAGTTCAACGCGCAATATTTTACATCACCCAACTTCTCCC
TGCCTTTGTTCCAGGACGTCAACAACGACGGCTTCAATGATGTCATTCTC
GGCGAGTCTCCCGACTCCACCTCTACCGCCGGGGCGGCGTACGTTGTGTT
CGGATCGGAGTCCTTTTCCGCCCTAAACCTGGACGTCTCCGCTCTGGACG
GCACGAACGGCTTCAAGATAGAGGGCACTGACGCCGGAGATTTTGCTGGG
ACCGCGGTTTGCGGCGCTGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10429:5766..6836+

>mRNA_Ecto-sp8_S_contig10429.686.1 ID=mRNA_Ecto-sp8_S_contig10429.686.1|Name=mRNA_Ecto-sp8_S_contig10429.686.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10429:5766..6836+ (Ectocarpus species8 EcLAC_412)
TTGGGTCTGCTGGACGGCACGGACGGATTTCGGGTGACCGCCGAGTTTTC
GACGGGCAGGCTTGGCTACTCAGTTTCCGGAGTTGGGGACGTCAACAACG
ACGGCTTCAATGATGTCATTCTCGGCGAGTCTCCCGACTCCACCTCTACC
GCCGGGGCGGCGTACGTTGTGTTCGGATCGGAGTCCTTTTCCGCCCTAAA
CCTGGACGTCTCCGCTCTGGACGGCACGAACGGCTTCAAGATAGAGGGCA
CTGACGCCGGAGATTTTGCTGGGACCGCGGTTTGCGGCGCTGGG
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