mRNA_Ecto-sp8_S_contig10429.685.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10429.685.1
Unique NamemRNA_Ecto-sp8_S_contig10429.685.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: D8LR45_ECTSI (Transducin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR45_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 3.000e-131
Identity = 233/292 (79.79%), Postives = 239/292 (81.85%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAEDVSA----ERVLLSRALLYNDGGFDVSEDGLWLCTIAELGERVVASDRRSLPAGTSLASEQSVPSLASPTGAAATASPMLTLTEVEEEEAGREGEAVEKGSAAAQGGKRKG 864
            SLQGH RTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAA  XXXXXXXXX                                       + ++V+    VWDFSLEAAFAEDVSA    ERVLLSRALLYNDGGFDVSEDGLWLCTIAELGERVVASDRRSLPAG SLASEQS+PSLASPTGAAATASPM TLTEVEEEEAGREGEAVEKGSAAA+GGKRKG
Sbjct:  112 SLQGHPRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAANSXXXXXXXXX---------------------------------------QQSQVT----VWDFSLEAAFAEDVSAAMTRERVLLSRALLYNDGGFDVSEDGLWLCTIAELGERVVASDRRSLPAGPSLASEQSIPSLASPTGAAATASPMSTLTEVEEEEAGREGEAVEKGSAAARGGKRKG 360
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: A0A6H5KP02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP02_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 6.640e-106
Identity = 229/408 (56.13%), Postives = 233/408 (57.11%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------EIPPPSRPAEVSFLLQVWDFSLEAAFAEDVSA----ERVLLSRALLYNDGGFDVSEDGLWLCTIAELGERVVASDRRSLPAGTSLASEQSVPSLASPTGAAATASPMLTLTEVEEEEAGREGEAVEKGS 834
            SLQGH RTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDY+SKARPFIAWAHSHTLRCVRFTPGGDGIIVGAA XXXXXXXXXXXX                                                                                                                                                             EIPP SRPAEVSFLLQVWDFSLEAA AEDVS     ERVLLSRALLYNDGGFDVSEDGLWLCTIAELGERVVASDRRSLPAG SLASEQS+PS+ASPT A     P+LTLTEVEEE AGREGEA EKGS
Sbjct:   81 SLQGHPRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYSSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAANXXXXXXXXXXXXRQEGPRCAAVQPRTTKTSRYARCDGGFISSGTSPKPLPLSRDFGRLCSWLTIPHVRKSRAQQWRPRPHFFFLFLWRPTSRGRYGIDVWRALSLSCGPRNRSPRGLPHSAHSPDQPDRRLDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPSSRPAEVSFLLQVWDFSLEAALAEDVSTAMTRERVLLSRALLYNDGGFDVSEDGLWLCTIAELGERVVASDRRSLPAGPSLASEQSIPSMASPTAAXXXXXPILTLTEVEEE-AGREGEAEEKGS 487
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: A0A7S2P0E3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P0E3_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.820e-37
Identity = 88/231 (38.10%), Postives = 115/231 (49.78%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAEDVSAE----------------RVLLSRALLYNDGGFDVSEDGLWLCTIAE 645
            S++GH RTPWTVKFHP D+ I ASGC+G +VRVW+   G CL  V L +A+ISLSFHP G +L++AS   +Y+W+Y  +  P   + H H+LRCV FTPGGD IIVG                                                   SR  + +  L++WDF  EAA  +   ++                R+ L RALLYNDGGFDVS  G +L   +E
Sbjct:  127 SMEGHPRTPWTVKFHPSDSGICASGCLGHQVRVWDTKEGVCLKMVRLYSAVISLSFHPRGGLLSMASGNGLYIWNYEKRDSPHPEFMHDHSLRCVSFTPGGDRIIVGGFVKRAH--------------------------------------------SRDKD-THSLRLWDFDYEAAVNQSSPSDNENLNNSTENQMLSNCRIFLHRALLYNDGGFDVSPCGKFLIACSE 312
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: A0A6A5AMX4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AMX4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 8.400e-37
Identity = 85/220 (38.64%), Postives = 112/220 (50.91%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAEDVSAER------VLLSRALLYNDGGFDVSEDGLWL--CT 636
            +L GH RTPW+VKFHP + R VASGC+G ++R W+  TG+CL+  TL  AIIS+SFHP G +L IAS   VY WDY   + P IA   + TLR V F P    I+VG A                                              P  + P++++  L +W+F L  + A + S  +      VLL+ ALLYNDGGFDVS+ G +L  CT
Sbjct:   83 TLVGHPRTPWSVKFHPTNPRYVASGCLGYQIRFWDVVTGKCLYEATLRHAIISVSFHPCGTVLGIASGTCVYTWDYQQHSIPRIAMFSNQTLRSVSFLPDPTKILVGEANEKYTR----------------------------------------PLGTVPSDLTVTLTLWEFDLAWSVASEPSTSKAMYSPHVLLTHALLYNDGGFDVSKCGQYLAVCT 262
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: A0A8K1FJQ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJQ7_PYTOL)

HSP 1 Score: 142 bits (358), Expect = 1.410e-34
Identity = 90/231 (38.96%), Postives = 109/231 (47.19%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAEDVSAE-------RVLLSRALLYNDGGFDVSEDGLWLCTIAELGERVVASD 672
            +L GH RTPW+VKFHP D R VASGC+G +VR W+  TGRCL+  TL  AIIS+SFHPSG +LAIAS   VY WDY     P IA     TLR V F P    I+VG A                                                 S PA+++  L +WDF    A +   S         R +LS AL+YNDGGFD+S  G +L   A+   R    D
Sbjct:  147 TLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIALFSYQTLRSVTFLPDPTKIMVGEANERYMQRPIGQNGQ-----------------------------------SHPADLTVTLTLWDFDPSWALSPQPSENTKAMNNSREILSHALIYNDGGFDISRCGRYLAICADFSLRQAEKD 341
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: G4YU78_PHYSP (Uncharacterized protein n=25 Tax=Phytophthora TaxID=4783 RepID=G4YU78_PHYSP)

HSP 1 Score: 141 bits (356), Expect = 1.590e-34
Identity = 87/226 (38.50%), Postives = 111/226 (49.12%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAED-------VSAERVLLSRALLYNDGGFDVSEDGLWLCTIAELGER 657
            +L GH RTPW+VKFHP D R VASGC+G +VR W+  TGRCL+  TL  AIIS+SFHPSG +LAIAS   VY WDY     P IA     TLR V F P    I+VG A                                                 + P++++  L +WDF    A + +       ++  RV+LS AL+YNDGGFD+S  G +L   A+   R
Sbjct:  118 TLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIAMFSYQTLRSVTFLPDPSKIMVGEANERYVRPQGQ---------------------------------------APPSDLTVTLTMWDFDPSWALSPEPLLTKKAMNNSRVILSHALIYNDGGFDISRCGRYLAICADFSLR 303
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: D0N3A2_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0N3A2_PHYIT)

HSP 1 Score: 141 bits (356), Expect = 1.600e-34
Identity = 87/226 (38.50%), Postives = 111/226 (49.12%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAED-------VSAERVLLSRALLYNDGGFDVSEDGLWLCTIAELGER 657
            +L GH RTPW+VKFHP D R VASGC+G +VR W+  TGRCL+  TL  AIIS+SFHPSG +LAIAS   VY WDY     P IA     TLR V F P    I+VG A                                                 + P++++  L +WDF    A + +       ++  RV+LS AL+YNDGGFD+S  G +L   A+   R
Sbjct:  118 TLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIAMFSYQTLRSVTFLPDPSKIMVGEANERYVRPQGQ---------------------------------------APPSDLTVTLTMWDFDPSWALSPEPLLTKKAMNNSRVILSHALIYNDGGFDISRCGRYLAICADFSLR 303
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: W4GBB9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBB9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.640e-34
Identity = 85/220 (38.64%), Postives = 112/220 (50.91%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAEDVSAER------VLLSRALLYNDGGFDVSEDGLWL--CT 636
            +L GH RTPW+VKFHP + R VASGC+G ++R W+  TG+CL+  TL  AIIS+SFHP G +L IAS   VY WDY   + P IA   + TLR V F P    I+VG A                                              P  + P++++  L +W+F L  + A + S  +      VLL+ ALLYNDGGFDVS+ G +L  CT
Sbjct:  134 TLVGHPRTPWSVKFHPTNPRYVASGCLGYQIRFWDVVTGKCLYEATLRHAIISVSFHPCGTVLGIASGTCVYTWDYQQHSIPRIAMFSNQTLRSVSFLPDPTKILVGEANEKYTR----------------------------------------PLGTVPSDLTVTLTLWEFDLAWSVASEPSTSKAMYSPHVLLTHALLYNDGGFDVSKCGQYLAVCT 313
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: A0A0W8CFI3_PHYNI (Activating molecule in BECN1-regulated autophagy protein 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CFI3_PHYNI)

HSP 1 Score: 141 bits (356), Expect = 3.480e-34
Identity = 87/226 (38.50%), Postives = 111/226 (49.12%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSLEAAFAED-------VSAERVLLSRALLYNDGGFDVSEDGLWLCTIAELGER 657
            +L GH RTPW+VKFHP D R VASGC+G +VR W+  TGRCL+  TL  AIIS+SFHPSG +LAIAS   VY WDY     P IA     TLR V F P    I+VG A                                                 + P++++  L +WDF    A + +       ++  RV+LS AL+YNDGGFD+S  G +L   A+   R
Sbjct:  118 TLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIAMFSYQTLRSVTFLPDPSKIMVGEANERYVRPQGQ---------------------------------------APPSDLTVTLTMWDFDPSWALSPEPLLTKKAMNNSRVILSHALIYNDGGFDISRCGRYLAICADFSLR 303
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BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Match: A0A6G0WMI1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMI1_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.440e-34
Identity = 84/220 (38.18%), Postives = 112/220 (50.91%), Query Frame = 1 
Query:    1 SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPPSRPAEVSFLLQVWDFSL------EAAFAEDVSAERVLLSRALLYNDGGFDVSEDGLWL--CT 636
            +L GH RTPW+VK+HP + R VASGC+G ++R W+  TG+CL+  TL  AIIS+SFHPSG ++ IAS   VY WDY   A P IA     TLR V F P    I++G A                                              P  S P++++  L +WD+ L      E    + + + RVLL+ ALLYNDGGFD+S+ G +L  CT
Sbjct:  127 TLVGHPRTPWSVKYHPTNPRYVASGCLGYQIRFWDVYTGKCLYEATLRHAIISVSFHPSGNVIGIASGTCVYTWDYQHSA-PRIAMFSYQTLRSVSFLPDATKILIGEANEVYTR----------------------------------------PLGSVPSDLTVTLTLWDYDLSWSTSTEPGTTKAMRSPRVLLTHALLYNDGGFDISKCGNYLAVCT 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10429.685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR45_ECTSI3.000e-13179.79Transducin family protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5KP02_9PHAE6.640e-10656.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2P0E3_9STRA1.820e-3738.10Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6A5AMX4_9STRA8.400e-3738.64Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8K1FJQ7_PYTOL1.410e-3438.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4YU78_PHYSP1.590e-3438.50Uncharacterized protein n=25 Tax=Phytophthora TaxI... [more]
D0N3A2_PHYIT1.600e-3438.50Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W4GBB9_9STRA1.640e-3438.64Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A0W8CFI3_PHYNI3.480e-3438.50Activating molecule in BECN1-regulated autophagy p... [more]
A0A6G0WMI1_9STRA5.440e-3438.18Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10429contigEcto-sp8_S_contig10429:655..3227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score402.1
Seed ortholog evalue2.1e-109
Seed eggNOG ortholog2880.D8LR45
Preferred nameTPL
Model size868
KEGG koko:K14558,ko:K14963,ko:K17985
KEGG Pathwayko03008,ko04137,ko04140,ko04934,map03008,map04137,map04140,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001101,GO:0003002,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0008150,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009867,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009933,GO:0009987,GO:0010014,GO:0010016,GO:0010033,GO:0010051,GO:0010072,GO:0010154,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0022414,GO:0023052,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0032870,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046983,GO:0048316,GO:0048367,GO:0048507,GO:0048508,GO:0048519,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071395,GO:0071495,GO:0080090,GO:0090421,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons5
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Cds size864
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03029,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.4313471-CDS-Ecto-sp8_S_contig10429:656..9651681143141.4313471-CDS-Ecto-sp8_S_contig10429:656..965Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10429 657..965 -
1681143141.4544597-CDS-Ecto-sp8_S_contig10429:1338..15211681143141.4544597-CDS-Ecto-sp8_S_contig10429:1338..1521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10429 1339..1521 -
1681143141.473468-CDS-Ecto-sp8_S_contig10429:2024..21651681143141.473468-CDS-Ecto-sp8_S_contig10429:2024..2165Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10429 2025..2165 -
1681143141.4842694-CDS-Ecto-sp8_S_contig10429:2695..28361681143141.4842694-CDS-Ecto-sp8_S_contig10429:2695..2836Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10429 2696..2836 -
1681143141.4942925-CDS-Ecto-sp8_S_contig10429:3137..32271681143141.4942925-CDS-Ecto-sp8_S_contig10429:3137..3227Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10429 3138..3227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10429.685.1prot_Ecto-sp8_S_contig10429.685.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10429 657..3227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10429.685.1

>prot_Ecto-sp8_S_contig10429.685.1 ID=prot_Ecto-sp8_S_contig10429.685.1|Name=mRNA_Ecto-sp8_S_contig10429.685.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=288bp
SLQGHSRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAA
IISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPG
GDGIIVGAANSSSSSSSPSSQQSQDDSSDAAGGGTRGGAAATAAAAAAAA
AGAEIPPPSRPAEVSFLLQVWDFSLEAAFAEDVSAERVLLSRALLYNDGG
FDVSEDGLWLCTIAELGERVVASDRRSLPAGTSLASEQSVPSLASPTGAA
ATASPMLTLTEVEEEEAGREGEAVEKGSAAAQGGKRKG
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mRNA from alignment at Ecto-sp8_S_contig10429:655..3227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10429.685.1 ID=mRNA_Ecto-sp8_S_contig10429.685.1|Name=mRNA_Ecto-sp8_S_contig10429.685.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2573bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10429:655..3227- (Ectocarpus species8 EcLAC_412)
TCCCTGCAAGGGCACTCCAGGACTCCTTGGACGGTCAAGTTCCACCCCAA
GGACGCCAGGATCGTAGCCTCCGGTTGCATCGGATCCGAGGTATGTTGTG
TGTGGTCGTGGGGGGGGGGGGGTGCGGTGGATCTCGGCCCTCCGGTACCC
TTGATCGCTGTCTGGTGTCGTGTTTCGCATGTTTATCGTGACGACCTGAT
ATGTGTCGTCTTGCAATTTTCGCGTACATTAGCGCCGCCGAGGGTGCGGA
AAGCCTGTTCTTCTTTTCCGCCCCTGATACGGATACTTGTTTTCTTGCTC
TGCTTTGTTCGGTTTCCCGTTGGGTTTCGGTGCTGTTGCCTTGCTGTCTT
TGTTGTGGTGCGGGCGCGGCGGACACCGCTTGTGTTGTCAGGTGAGGGTG
TGGAACGCTTCGACGGGGCGTTGCCTGCATAGCGTGACCCTGGAGGCTGC
CATCATTTCCTTGAGCTTTCACCCTTCCGGCAAGATGCTCGCCATAGCCA
GCAGCCTCTACGTCTACCTGTGGGACTACAACGTAAGTAGCCGATACCTT
CGTACATGGCTTGTTTTTGCCGGCACATGCCCTGTAAAGCTGACGTCAGC
AGCAGCAGCAGCAGGAGCAAAACACTTCGCGACGAATTATATATTTTACC
TTTGACGAGGGTCATATGCAAGAGGCATGTCAAAATATGTGTGTCCCTAA
GTATGTGCGTCACATTTCAAAATCGCACGGTCCCGCAAATTGGTCATGTT
AGTGAAGTGCATCCCAAGGACTTGCAACTACTGCTTGGTGACATCGTTGC
CGATATTGGTTCTACACGGGTGCCGTGAGAGAATTAATGCTCAACGAACC
GGCGTTTCGAAAGGACTTCAACATTGTGTAGAGATAGTTGGTTTGAAGAC
GACCAGTAAATCTACCAGGTGTGCCCATGGCTCGTTTATCATATGCTTTG
TCCATGCATAACACACCGTGAATATTTGGAACCTGTCGTCTGCAGGATTT
GCCTCCCCTTCAACCATAGCGAGCTGACTTGAACCTTGTTCTTTTTTGTT
CTGGCCAATCAGAGCAAGGCGCGCCCGTTCATCGCATGGGCCCACTCGCA
CACTCTGCGCTGCGTGCGTTTTACTCCCGGCGGGGACGGCATCATCGTCG
GTGCTGCTAACAGCAGCTCAAGCTCCAGTTCCCCTTCGTCTCAACAAAGC
CAGGTGACAGTCAGACAGATATATATATATATATAGAGAGAGAGAGGGAG
GGACACAGGCAGCGCCAGAGACAAGCAGACAAATCAGTTTGTGTATGTAG
GGGGGAATGAATGTAGCCCGCAGACTACAATGGACTAAATAGGAGGGGCC
ACGGTGCGCAGCGGTACAACCTCAAACAACCAAGATGCCGCGGTACGCTA
GGTGTTATAGGGGGCTTTATTTCGAGCGGAACCTCCCCAAAGCTCTTGCC
GCCCTCGAAGGACGTCGGAAGGTTGTGCTTTTGGTTGACTATACCGGATG
TGCGTAAAAGCAGAGCACGGCAGTGCCAGTGGCGGCCTCGACCACACTTC
TTCTTTTTGTTCTTGTGGAGCCCAACCTCCTGAGGGCGATGAGGAATCGA
TGTCTGGCGTGCAGTTTCCCTCTCATGCGGACGATGCAATAGATTCCCGC
GAGGCTTGTCTCACTCCGCCCTCTCGCTCGACCAACCCGACCGGCGTCTG
GACCAGGACGACTCCTCTGATGCCGCGGGAGGAGGAACGCGGGGTGGAGC
AGCAGCTACAGCAGCAGCAGCAGCAGCAGCAGCGGCTGGAGCAGAAATCC
CACCACCATCCCGGCCCGCCGAGGTGTCTTTCCTGCTGCAGGTCTGGGAC
TTTAGTCTCGAGGCAGCTTTTGCGGAGGATGTCTCCGCGGCGATGACCGG
GGTGAGGAGACCAATTATTTGGCCTCGTTCCGTGGGTATGGGTCGTTCTT
TCCCCTGCTGTATTTTGAACCGGTGTGAGGCTTGGTTTCTCGTATGGGAA
CGTTGTTGCCAATTTTTTTGCCTGTGAGCGTTATGGACAAAAGAAAAAGG
CGCCGGCGAAAACACGTGCTCAAGTATGGCTTAGTTCGCTGCCTCCCCCG
CTCTGTGCCTCTCGCTCTCTTTCTCTCGCCCCCCAACCCCCGCTCCGCCT
TTTTGCAACTCCCGTCCACGTTTCTCGCTTAGCCCTTTCTCCCACCGCGC
TCGGCCGAACCACTTTTTGTTTCTTTTTTTCGCCGCTCGCAAAACGCGTG
CGGGGGGGGTAGGAACGCGTGCTCCTGAGCCGAGCCCTGCTGTACAACGA
CGGGGGGTTCGATGTGTCCGAGGACGGTCTCTGGCTGTGCACGATCGCCG
AGCTAGGGGAGAGGGTTGTCGCGAGCGACCGCCGTTCTCTCCCCGCCGGT
ACGAGCCTGGCTTCGGAGCAGTCGGTCCCTTCGTTGGCATCGCCCACGGG
GGCCGCGGCGACGGCGTCACCGATGTTGACGTTGACGGAGGTGGAGGAGG
AGGAAGCGGGGCGTGAAGGGGAGGCCGTGGAGAAAGGTTCGGCGGCGGCG
CAGGGGGGTAAGCGTAAGGGACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10429:655..3227-

>mRNA_Ecto-sp8_S_contig10429.685.1 ID=mRNA_Ecto-sp8_S_contig10429.685.1|Name=mRNA_Ecto-sp8_S_contig10429.685.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10429:655..3227- (Ectocarpus species8 EcLAC_412)
TCCCTGCAAGGGCACTCCAGGACTCCTTGGACGGTCAAGTTCCACCCCAA
GGACGCCAGGATCGTAGCCTCCGGTTGCATCGGATCCGAGGTGAGGGTGT
GGAACGCTTCGACGGGGCGTTGCCTGCATAGCGTGACCCTGGAGGCTGCC
ATCATTTCCTTGAGCTTTCACCCTTCCGGCAAGATGCTCGCCATAGCCAG
CAGCCTCTACGTCTACCTGTGGGACTACAACAGCAAGGCGCGCCCGTTCA
TCGCATGGGCCCACTCGCACACTCTGCGCTGCGTGCGTTTTACTCCCGGC
GGGGACGGCATCATCGTCGGTGCTGCTAACAGCAGCTCAAGCTCCAGTTC
CCCTTCGTCTCAACAAAGCCAGGACGACTCCTCTGATGCCGCGGGAGGAG
GAACGCGGGGTGGAGCAGCAGCTACAGCAGCAGCAGCAGCAGCAGCAGCG
GCTGGAGCAGAAATCCCACCACCATCCCGGCCCGCCGAGGTGTCTTTCCT
GCTGCAGGTCTGGGACTTTAGTCTCGAGGCAGCTTTTGCGGAGGATGTCT
CCGCGGAACGCGTGCTCCTGAGCCGAGCCCTGCTGTACAACGACGGGGGG
TTCGATGTGTCCGAGGACGGTCTCTGGCTGTGCACGATCGCCGAGCTAGG
GGAGAGGGTTGTCGCGAGCGACCGCCGTTCTCTCCCCGCCGGTACGAGCC
TGGCTTCGGAGCAGTCGGTCCCTTCGTTGGCATCGCCCACGGGGGCCGCG
GCGACGGCGTCACCGATGTTGACGTTGACGGAGGTGGAGGAGGAGGAAGC
GGGGCGTGAAGGGGAGGCCGTGGAGAAAGGTTCGGCGGCGGCGCAGGGGG
GTAAGCGTAAGGGA
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