mRNA_Ecto-sp8_S_contig104230.681.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104230.681.1
Unique NamemRNA_Ecto-sp8_S_contig104230.681.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: D8LS32_ECTSI (DUF667 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS32_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.600e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVKG 126
            MFQSAYQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVKG
Sbjct:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVKG 42
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: UPI00051E319B (uncharacterized protein C3orf67 homolog n=1 Tax=Struthio camelus australis TaxID=441894 RepID=UPI00051E319B)

HSP 1 Score: 50.4 bits (119), Expect = 6.890e-7
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSGK---VVRMYEKGVKG 126
            MF++ YQ G  VE+FS  GKNP A WK+SG    + + Y+K VKG
Sbjct:    1 MFKNHYQGGAFVEIFSAQGKNPGAQWKISGNPSAIWKEYDKEVKG 45
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: K3WUJ6_GLOUD (DUF667 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUJ6_GLOUD)

HSP 1 Score: 50.1 bits (118), Expect = 5.690e-6
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   16 YQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVKG 126
            +Q GD VE+ S  GK PAA WKL GK+++ +EK +KG
Sbjct:   10 FQGGDYVELLSAQGKAPAATWKLQGKILKSFEKTIKG 46
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: UPI001ED86539 (uncharacterized protein C3orf67 homolog isoform X1 n=6 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED86539)

HSP 1 Score: 48.9 bits (115), Expect = 1.910e-5
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSG---KVVRMYEKGVKG 126
            MF++ YQ G  VEVFS  GK+P A+WKLSG    + + Y K VKG
Sbjct:    1 MFRNNYQGGAVVEVFSGQGKDPVANWKLSGGPSAIHKEYHKEVKG 45
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: A0A024UM85_9STRA (DUF667 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UM85_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   16 YQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEK 114
            +Q GD VE+ +  GKNPAA WKL+GKV R Y+K
Sbjct:    2 FQGGDSVELLAAGGKNPAAPWKLTGKVRREYDK 34
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: W4GA46_9STRA (DUF667 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GA46_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   16 YQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVK 123
            YQ GD VE+ +  GK+PAA WKL+GKV R Y+K  K
Sbjct:    2 YQGGDSVELLAAGGKDPAAPWKLTGKVRREYDKPSK 37
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: A0A3R7A4C9_9STRA (DUF667 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A4C9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   16 YQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVK 123
            YQ GD VE+ +  GK+PAA WKL+GKV R Y+K  K
Sbjct:    2 YQGGDSVELLAAGGKDPAAPWKLTGKVRREYDKPSK 37
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: A0A418AWC4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AWC4_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   16 YQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEK 114
            +Q GD VE+ +  GKNPAA WKL+GKV R Y+K
Sbjct:   19 FQGGDSVELLAAGGKNPAAPWKLTGKVRREYDK 51
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: A0A3P8UKN3_CYNSE (Chromosome 11 C3orf67 homolog n=4 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8UKN3_CYNSE)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 23/45 (51.11%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSG---KVVRMYEKGVKG 126
            MF   YQ G  VE+FS  GK+P A WKLSG    + + Y K VKG
Sbjct:    1 MFSRNYQGGAVVEIFSAQGKDPVAQWKLSGGPSAIQKEYNKEVKG 45
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BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Match: A0A3P8ULR8_CYNSE (Chromosome 11 C3orf67 homolog n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8ULR8_CYNSE)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 23/45 (51.11%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSG---KVVRMYEKGVKG 126
            MF   YQ G  VE+FS  GK+P A WKLSG    + + Y K VKG
Sbjct:    1 MFSRNYQGGAVVEIFSAQGKDPVAQWKLSGGPSAIQKEYNKEVKG 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104230.681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LS32_ECTSI2.600e-21100.00DUF667 domain-containing protein n=1 Tax=Ectocarpu... [more]
UPI00051E319B6.890e-751.11uncharacterized protein C3orf67 homolog n=1 Tax=St... [more]
K3WUJ6_GLOUD5.690e-654.05DUF667 domain-containing protein n=1 Tax=Globispor... [more]
UPI001ED865391.910e-553.33uncharacterized protein C3orf67 homolog isoform X1... [more]
A0A024UM85_9STRA2.620e-560.61DUF667 domain-containing protein n=1 Tax=Aphanomyc... [more]
W4GA46_9STRA2.620e-558.33DUF667 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A3R7A4C9_9STRA2.620e-558.33DUF667 domain-containing protein n=4 Tax=Aphanomyc... [more]
A0A418AWC4_9STRA2.620e-560.61Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3P8UKN3_CYNSE4.900e-551.11Chromosome 11 C3orf67 homolog n=4 Tax=Cynoglossus ... [more]
A0A3P8ULR8_CYNSE4.900e-551.11Chromosome 11 C3orf67 homolog n=1 Tax=Cynoglossus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104230contigEcto-sp8_S_contig104230:30..158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score93.2
Seed ortholog evalue3.2e-17
Seed eggNOG ortholog2880.D8LS32
Model size129
KEGG koko:K06236
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.regulation of cilium movement involved in cell motility
EggNOG OGsKOG3213@1,KOG3213@2759
Cds size129
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.2454073-CDS-Ecto-sp8_S_contig104230:29..1581681143141.2454073-CDS-Ecto-sp8_S_contig104230:29..158Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104230 30..158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104230.681.1prot_Ecto-sp8_S_contig104230.681.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104230 30..158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104230.681.1

>prot_Ecto-sp8_S_contig104230.681.1 ID=prot_Ecto-sp8_S_contig104230.681.1|Name=mRNA_Ecto-sp8_S_contig104230.681.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=43bp
MFQSAYQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVKG*
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mRNA from alignment at Ecto-sp8_S_contig104230:30..158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104230.681.1 ID=mRNA_Ecto-sp8_S_contig104230.681.1|Name=mRNA_Ecto-sp8_S_contig104230.681.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104230:30..158+ (Ectocarpus species8 EcLAC_412)
ATGTTCCAGTCGGCGTATCAGGATGGTGACTGCGTAGAAGTGTTCTCGCC
AGCAGGAAAGAATCCCGCTGCGGATTGGAAGCTTAGCGGGAAGGTCGTTC
GCATGTACGAGAAAGGAGTGAAAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104230:30..158+

>mRNA_Ecto-sp8_S_contig104230.681.1 ID=mRNA_Ecto-sp8_S_contig104230.681.1|Name=mRNA_Ecto-sp8_S_contig104230.681.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104230:30..158+ (Ectocarpus species8 EcLAC_412)
ATGTTCCAGTCGGCGTATCAGGATGGTGACTGCGTAGAAGTGTTCTCGCC
AGCAGGAAAGAATCCCGCTGCGGATTGGAAGCTTAGCGGGAAGGTCGTTC
GCATGTACGAGAAAGGAGTGAAAGGGTGA
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