mRNA_Ecto-sp8_S_contig104228.680.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104228.680.1
Unique NamemRNA_Ecto-sp8_S_contig104228.680.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A0K2V3Z7_LEPSM (Uncharacterized protein (Fragment) n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V3Z7_LEPSM)

HSP 1 Score: 199 bits (506), Expect = 6.010e-56
Identity = 94/173 (54.34%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTIL 519
            DGVTHL+A    S KY VAV KEI  M   WV  VWK S  + V A D +FS  +CPAL+G+ +SVSQ+N  DK+LLKKS+E+HGG+YS  L+++ T VL+  +P G+K+S+A KW IP ++S WVFD IEKGYCL++D Y+++  K N STPTK+D  ++ L EVS+CSTI+
Sbjct:  146 DGVTHLIAAVVHSPKYSVAVEKEIPIMTEEWVRNVWKKSQNDNVAATDGQFSRFKCPALMGLNISVSQMNPKDKDLLKKSIESHGGIYSKALDINSTNVLIVPTPEGEKFSYATKWKIPTLNSNWVFDSIEKGYCLESDEYKIE--KRNCSTPTKED--VSRLTEVSLCSTIM 314          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A553PB58_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PB58_TIGCA)

HSP 1 Score: 191 bits (484), Expect = 5.550e-53
Identity = 92/174 (52.87%), Postives = 124/174 (71.26%), Query Frame = 1
Query:    1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAG-LAEVSMCSTIL 519
            +GVTHLVA   RS+KYEVAV K+I  M   WV+ VW  S    ++A D +F+ + CPAL G+ ++VSQ+ + DK+LL+K +E+HGG+YS VL+M+KT +LV     G+K+ +A+KW IPCV  +WV+D I KGYCL T  YRV+  K   STPT+ D++MA  L EVSMCSTIL
Sbjct:  157 EGVTHLVADVVRSRKYEVAVEKDIPIMSSEWVQVVWDKSKHGTLHATDKQFAKYACPALKGLCITVSQMYKKDKDLLRKCIESHGGIYSPVLDMEKTVILVIPKAEGEKFDYARKWKIPCVKPEWVYDSISKGYCLPTLDYRVEERKV--STPTRSDRSMASKLDEVSMCSTIL 328          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI000C78BB31 (DNA topoisomerase 2-binding protein 1-A-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78BB31)

HSP 1 Score: 178 bits (451), Expect = 3.310e-52
Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSM 504
            DGVTH+++    S+KY+VAV   I  M   WV EVWK      V+AVD RF  + CPALLG+TV+VSQL++ D+  +KK +ETHGG +   L MD+T +L+C S  G K+  A+KW IPC++ QW+   ++KG  L  D YRV+R    +STPTK+D T+ GL EVS+
Sbjct:  154 DGVTHIISSKVNSEKYKVAVKIPIPVMTKEWVYEVWKACKRGTVSAVDSRFLQYICPALLGLTVTVSQLSKVDRNAIKKKIETHGGYFLPELTMDETDILICVSGEGPKFEFAQKWKIPCLNIQWILHSVDKGTALPMDEYRVERESNKASTPTKEDTTVTGLEEVSI 321          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A0K2UKZ4_LEPSM (Uncharacterized protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2UKZ4_LEPSM)

HSP 1 Score: 186 bits (473), Expect = 1.660e-51
Identity = 90/173 (52.02%), Postives = 125/173 (72.25%), Query Frame = 1
Query:    1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTIL 519
            DGVTHLVA    S KY VAV KEI  M   WV +VWK S  + V AVD +F+ + CPAL+G+ ++VSQ++  DKE++KK++E+HGG+Y   L+M  T VL+  +P G+KY++AKKW IP ++S W+FD IEKG+CL  D Y+V+  K N STPTK++  ++ L +VS+CSTIL
Sbjct:  142 DGVTHLVAAVVHSPKYSVAVEKEIPIMTEEWVLQVWKKSQIDNVAAVDRQFTRYACPALMGLGITVSQMSVKDKEVIKKTIESHGGIYLKSLDMHTTNVLIIPTPEGEKYTYAKKWKIPTLNSNWIFDSIEKGHCLSLDDYKVE--KRNVSTPTKEN--ISQLKDVSLCSTIL 310          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A5B7E2J3_PORTR (DNA topoisomerase 2-binding protein 1 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7E2J3_PORTR)

HSP 1 Score: 155 bits (392), Expect = 3.210e-41
Identity = 79/174 (45.40%), Postives = 106/174 (60.92%), Query Frame = 1
Query:    4 GVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKV---SNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTI 516
            GVTHLVA    S+KY+V V +EI  M   WV  VW+     +T+ + A D RF SH CP L G+ V VSQL+RA K  LK  +E +GG YS +LEM KT+VL+ ++P G+KYSHA KW I C++  W++D +++G+ L  + Y V + K   STP           EVS CS I
Sbjct:  160 GVTHLVANEVGSKKYQVGVEQEIPIMTGEWVYAVWQAVVKDHTQHIMATDERFLSHTCPVLHGMVVCVSQLDRATKLTLKGIIEENGGTYSAMLEMSKTSVLIVSAPEGEKYSHACKWRIKCLTQDWIYDSVQRGHALTMEGYEVKKQKL--STPVSSQANTTLPPEVSQCSAI 331          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A7R8CJ05_LEPSM (TOPBP1 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CJ05_LEPSM)

HSP 1 Score: 156 bits (395), Expect = 4.680e-41
Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 1
Query:    1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDR 435
            DGVTHL+A    S KY VAV KEI  M   WV                 +FS  +CPAL+G+ +SVSQ+N  DK+LLKKS+E+HGG+YS  L+++ T VL+  +P G+K+S+A KW IP ++S WVFD IEKGYCL++D Y++++
Sbjct:  133 DGVTHLIAAVVHSPKYSVAVEKEIPIMTEEWVHG---------------QFSRFKCPALMGLNISVSQMNPKDKDLLKKSIESHGGIYSKALDINSTNVLIVPTPEGEKFSYATKWKIPTLNSNWVFDSIEKGYCLESDEYKIEK 262          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI001E1CB11D (DNA topoisomerase 2-binding protein 1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CB11D)

HSP 1 Score: 155 bits (392), Expect = 1.300e-40
Identity = 79/174 (45.40%), Postives = 106/174 (60.92%), Query Frame = 1
Query:    4 GVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKV---SNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTI 516
            GVTHLVA    S+KY+V V +EI  M   WV  VW+     +T+ + A D RF SH CP L G+ V VSQL+RA K  LK  +E +GG YS +LEM KT+VL+ ++P G+KYSHA KW I C++  W++D +++G+ L  + Y V + K   STP           EVS CS I
Sbjct:  145 GVTHLVANEVGSKKYQVGVEQEIPIMTGEWVYAVWQAVVKDHTQHIMATDERFLSHTCPVLHGMVVCVSQLDRATKLTLKGIIEENGGTYSAMLEMSKTSVLIVSAPEGEKYSHACKWRIKCLTQDWIYDSVQRGHALTMEGYEVKKQKL--STPVSSQANTTLPPEVSQCSAI 316          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI0018849840 (DNA topoisomerase 2-binding protein 1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018849840)

HSP 1 Score: 153 bits (387), Expect = 5.670e-40
Identity = 74/161 (45.96%), Postives = 104/161 (64.60%), Query Frame = 1
Query:    1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMA 483
            +GVTHLVAG   S KY+VAV +E+  M   WV+ VW+ S  + V A DP+F+   CP   G+ + VSQL+R DKE ++K +E +GG Y   LE +KT+VLV  S  G+K + A++W IPCV  +W++D +E+G+CL  + Y        SSTPTK + TMA
Sbjct:  157 EGVTHLVAGVVASPKYQVAVTREVPVMRAAWVDRVWEASCRQTVQATDPQFADLTCPPFQGLFICVSQLSRKDKEAIRKIIENNGGSYMTQLECEKTSVLVSPSMDGEKVTFARRWQIPCVVPEWLYDSVERGWCLGMEEYTTAVKAKLSSTPTK-NHTMA 316          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A8K0JUE7_LADFU (Uncharacterized protein (Fragment) n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JUE7_LADFU)

HSP 1 Score: 142 bits (358), Expect = 4.520e-38
Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = 1
Query:    7 VTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRV-DRGKANSSTPTKQDQTMAGLAEVSMCSTIL 519
            VTHL+A    SQKY+VA  + I  M   WV  VW+    E VNA DP+F+S++ PA  G+ +  SQ+++A+K+ + K +  +GG YS  LE  +T VLV   P+G KY  AKKW+IPCV+ QWVFD    GY L  D Y   +  +A  STP K       L + SMCSTI+
Sbjct:  147 VTHLIANAVGSQKYKVAAERGIPIMSEDWVNAVWEAGLKENVNASDPQFASYKLPAFKGLLICASQISKAEKQKVMKVITENGGRYSPQLECKETNVLVIGDPSGTKYIFAKKWDIPCVTPQWVFDSASHGYSLPFDGYIPGEEVEAKCSTP-KLGGNPGVLPDFSMCSTIV 317          
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI001ED877B3 (DNA topoisomerase 2-binding protein 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED877B3)

HSP 1 Score: 141 bits (356), Expect = 9.050e-36
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = 1
Query:    7 VTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVD---RGKANSSTPTKQDQTMAGLAEVSMCSTI 516
            VTHL+A    SQKY+VAV +++  M   WV  VW+   TE V A+DP+FS  + PA  G+ V  SQ+ + DK+ L K V   GG YS  L+  +T VLV    +G K++ AKKW IPCV+ QWV+D    G CL  +SY V+     KA  STP +  +T   L + SMCSTI
Sbjct:  147 VTHLIADGVGSQKYKVAVERKVPIMTEEWVSSVWESGLTENVCALDPQFSHFKLPAFKGIVVCASQITKKDKQNLMKLVTGGGGQYSPQLDSKETGVLVIGDASGTKFTFAKKWGIPCVTPQWVYDSSACGLCLPFESYAVEGEPSAKALCSTP-EAGKTQDALPDFSMCSTI 318          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K2V3Z7_LEPSM6.010e-5654.34Uncharacterized protein (Fragment) n=2 Tax=Lepeoph... [more]
A0A553PB58_TIGCA5.550e-5352.87Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
UPI000C78BB313.310e-5248.81DNA topoisomerase 2-binding protein 1-A-like n=1 T... [more]
A0A0K2UKZ4_LEPSM1.660e-5152.02Uncharacterized protein n=3 Tax=Lepeophtheirus sal... [more]
A0A5B7E2J3_PORTR3.210e-4145.40DNA topoisomerase 2-binding protein 1 n=1 Tax=Port... [more]
A0A7R8CJ05_LEPSM4.680e-4148.97TOPBP1 n=1 Tax=Lepeophtheirus salmonis TaxID=72036... [more]
UPI001E1CB11D1.300e-4045.40DNA topoisomerase 2-binding protein 1-like n=1 Tax... [more]
UPI00188498405.670e-4045.96DNA topoisomerase 2-binding protein 1-like n=1 Tax... [more]
A0A8K0JUE7_LADFU4.520e-3844.77Uncharacterized protein (Fragment) n=1 Tax=Ladona ... [more]
UPI001ED877B39.050e-3645.09DNA topoisomerase 2-binding protein 1 n=1 Tax=Isch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104228contigEcto-sp8_S_contig104228:2..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start0
Seed ortholog score139.4
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog6669.EFX68227
Model size519
KEGG koko:K10728
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000278,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0031570,GO:0033314,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047
Exons1
EggNOG free text desc.DNA topoisomerase 2-binding protein
EggNOG OGs38CXB@33154,3BFK7@33208,3CV4U@33213,41XXN@6656,KOG1929@1,KOG1929@2759
Cds size519
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.202198-CDS-Ecto-sp8_S_contig104228:1..5201681143141.202198-CDS-Ecto-sp8_S_contig104228:1..520Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104228 2..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104228.680.1prot_Ecto-sp8_S_contig104228.680.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104228 2..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104228.680.1

>prot_Ecto-sp8_S_contig104228.680.1 ID=prot_Ecto-sp8_S_contig104228.680.1|Name=mRNA_Ecto-sp8_S_contig104228.680.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp
DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPR
FSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVL
VCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANS
STPTKQDQTMAGLAEVSMCSTIL
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mRNA from alignment at Ecto-sp8_S_contig104228:2..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104228.680.1 ID=mRNA_Ecto-sp8_S_contig104228.680.1|Name=mRNA_Ecto-sp8_S_contig104228.680.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104228:2..520- (Ectocarpus species8 EcLAC_412)
GACGGGGTGACTCACTTGGTGGCAGGCACGGCAAGGAGTCAGAAGTATGA GGTGGCCGTTGGAAAGGAGATCTCCTGCATGCTGCCCAGGTGGGTGGAGG AGGTGTGGAAGGTCTCCAACACCGAAATCGTGAACGCAGTGGACCCCAGA TTCAGCAGTCACCGGTGTCCAGCACTGCTAGGGGTGACTGTGAGTGTGAG CCAGCTGAACAGGGCGGACAAGGAGCTGCTGAAGAAGAGTGTCGAGACGC ACGGCGGGGTGTACAGTGGCGTGTTGGAGATGGACAAGACCACGGTGTTG GTCTGCACCAGCCCGGCTGGAGACAAGTACAGCCACGCTAAGAAGTGGAA CATTCCCTGCGTGTCCAGCCAGTGGGTGTTTGACTGCATAGAGAAGGGAT ACTGCTTGCAGACGGACAGCTACAGGGTCGACAGGGGGAAGGCTAACAGC TCTACCCCCACCAAGCAGGACCAGACCATGGCGGGGTTAGCAGAGGTTTC TATGTGTTCAACAATACTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104228:2..520-

>mRNA_Ecto-sp8_S_contig104228.680.1 ID=mRNA_Ecto-sp8_S_contig104228.680.1|Name=mRNA_Ecto-sp8_S_contig104228.680.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104228:2..520- (Ectocarpus species8 EcLAC_412)
GACGGGGTGACTCACTTGGTGGCAGGCACGGCAAGGAGTCAGAAGTATGA
GGTGGCCGTTGGAAAGGAGATCTCCTGCATGCTGCCCAGGTGGGTGGAGG
AGGTGTGGAAGGTCTCCAACACCGAAATCGTGAACGCAGTGGACCCCAGA
TTCAGCAGTCACCGGTGTCCAGCACTGCTAGGGGTGACTGTGAGTGTGAG
CCAGCTGAACAGGGCGGACAAGGAGCTGCTGAAGAAGAGTGTCGAGACGC
ACGGCGGGGTGTACAGTGGCGTGTTGGAGATGGACAAGACCACGGTGTTG
GTCTGCACCAGCCCGGCTGGAGACAAGTACAGCCACGCTAAGAAGTGGAA
CATTCCCTGCGTGTCCAGCCAGTGGGTGTTTGACTGCATAGAGAAGGGAT
ACTGCTTGCAGACGGACAGCTACAGGGTCGACAGGGGGAAGGCTAACAGC
TCTACCCCCACCAAGCAGGACCAGACCATGGCGGGGTTAGCAGAGGTTTC
TATGTGTTCAACAATACTA
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