mRNA_Ecto-sp8_S_contig104228.680.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A0K2V3Z7_LEPSM (Uncharacterized protein (Fragment) n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V3Z7_LEPSM) HSP 1 Score: 199 bits (506), Expect = 6.010e-56 Identity = 94/173 (54.34%), Postives = 126/173 (72.83%), Query Frame = 1
Query: 1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTIL 519
DGVTHL+A S KY VAV KEI M WV VWK S + V A D +FS +CPAL+G+ +SVSQ+N DK+LLKKS+E+HGG+YS L+++ T VL+ +P G+K+S+A KW IP ++S WVFD IEKGYCL++D Y+++ K N STPTK+D ++ L EVS+CSTI+
Sbjct: 146 DGVTHLIAAVVHSPKYSVAVEKEIPIMTEEWVRNVWKKSQNDNVAATDGQFSRFKCPALMGLNISVSQMNPKDKDLLKKSIESHGGIYSKALDINSTNVLIVPTPEGEKFSYATKWKIPTLNSNWVFDSIEKGYCLESDEYKIE--KRNCSTPTKED--VSRLTEVSLCSTIM 314
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A553PB58_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PB58_TIGCA) HSP 1 Score: 191 bits (484), Expect = 5.550e-53 Identity = 92/174 (52.87%), Postives = 124/174 (71.26%), Query Frame = 1
Query: 1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAG-LAEVSMCSTIL 519
+GVTHLVA RS+KYEVAV K+I M WV+ VW S ++A D +F+ + CPAL G+ ++VSQ+ + DK+LL+K +E+HGG+YS VL+M+KT +LV G+K+ +A+KW IPCV +WV+D I KGYCL T YRV+ K STPT+ D++MA L EVSMCSTIL
Sbjct: 157 EGVTHLVADVVRSRKYEVAVEKDIPIMSSEWVQVVWDKSKHGTLHATDKQFAKYACPALKGLCITVSQMYKKDKDLLRKCIESHGGIYSPVLDMEKTVILVIPKAEGEKFDYARKWKIPCVKPEWVYDSISKGYCLPTLDYRVEERKV--STPTRSDRSMASKLDEVSMCSTIL 328
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI000C78BB31 (DNA topoisomerase 2-binding protein 1-A-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78BB31) HSP 1 Score: 178 bits (451), Expect = 3.310e-52 Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 1
Query: 1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSM 504
DGVTH+++ S+KY+VAV I M WV EVWK V+AVD RF + CPALLG+TV+VSQL++ D+ +KK +ETHGG + L MD+T +L+C S G K+ A+KW IPC++ QW+ ++KG L D YRV+R +STPTK+D T+ GL EVS+
Sbjct: 154 DGVTHIISSKVNSEKYKVAVKIPIPVMTKEWVYEVWKACKRGTVSAVDSRFLQYICPALLGLTVTVSQLSKVDRNAIKKKIETHGGYFLPELTMDETDILICVSGEGPKFEFAQKWKIPCLNIQWILHSVDKGTALPMDEYRVERESNKASTPTKEDTTVTGLEEVSI 321
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A0K2UKZ4_LEPSM (Uncharacterized protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2UKZ4_LEPSM) HSP 1 Score: 186 bits (473), Expect = 1.660e-51 Identity = 90/173 (52.02%), Postives = 125/173 (72.25%), Query Frame = 1
Query: 1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTIL 519
DGVTHLVA S KY VAV KEI M WV +VWK S + V AVD +F+ + CPAL+G+ ++VSQ++ DKE++KK++E+HGG+Y L+M T VL+ +P G+KY++AKKW IP ++S W+FD IEKG+CL D Y+V+ K N STPTK++ ++ L +VS+CSTIL
Sbjct: 142 DGVTHLVAAVVHSPKYSVAVEKEIPIMTEEWVLQVWKKSQIDNVAAVDRQFTRYACPALMGLGITVSQMSVKDKEVIKKTIESHGGIYLKSLDMHTTNVLIIPTPEGEKYTYAKKWKIPTLNSNWIFDSIEKGHCLSLDDYKVE--KRNVSTPTKEN--ISQLKDVSLCSTIL 310
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A5B7E2J3_PORTR (DNA topoisomerase 2-binding protein 1 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7E2J3_PORTR) HSP 1 Score: 155 bits (392), Expect = 3.210e-41 Identity = 79/174 (45.40%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 4 GVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKV---SNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTI 516
GVTHLVA S+KY+V V +EI M WV VW+ +T+ + A D RF SH CP L G+ V VSQL+RA K LK +E +GG YS +LEM KT+VL+ ++P G+KYSHA KW I C++ W++D +++G+ L + Y V + K STP EVS CS I
Sbjct: 160 GVTHLVANEVGSKKYQVGVEQEIPIMTGEWVYAVWQAVVKDHTQHIMATDERFLSHTCPVLHGMVVCVSQLDRATKLTLKGIIEENGGTYSAMLEMSKTSVLIVSAPEGEKYSHACKWRIKCLTQDWIYDSVQRGHALTMEGYEVKKQKL--STPVSSQANTTLPPEVSQCSAI 331
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A7R8CJ05_LEPSM (TOPBP1 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CJ05_LEPSM) HSP 1 Score: 156 bits (395), Expect = 4.680e-41 Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 1
Query: 1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDR 435
DGVTHL+A S KY VAV KEI M WV +FS +CPAL+G+ +SVSQ+N DK+LLKKS+E+HGG+YS L+++ T VL+ +P G+K+S+A KW IP ++S WVFD IEKGYCL++D Y++++
Sbjct: 133 DGVTHLIAAVVHSPKYSVAVEKEIPIMTEEWVHG---------------QFSRFKCPALMGLNISVSQMNPKDKDLLKKSIESHGGIYSKALDINSTNVLIVPTPEGEKFSYATKWKIPTLNSNWVFDSIEKGYCLESDEYKIEK 262
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI001E1CB11D (DNA topoisomerase 2-binding protein 1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CB11D) HSP 1 Score: 155 bits (392), Expect = 1.300e-40 Identity = 79/174 (45.40%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 4 GVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKV---SNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMAGLAEVSMCSTI 516
GVTHLVA S+KY+V V +EI M WV VW+ +T+ + A D RF SH CP L G+ V VSQL+RA K LK +E +GG YS +LEM KT+VL+ ++P G+KYSHA KW I C++ W++D +++G+ L + Y V + K STP EVS CS I
Sbjct: 145 GVTHLVANEVGSKKYQVGVEQEIPIMTGEWVYAVWQAVVKDHTQHIMATDERFLSHTCPVLHGMVVCVSQLDRATKLTLKGIIEENGGTYSAMLEMSKTSVLIVSAPEGEKYSHACKWRIKCLTQDWIYDSVQRGHALTMEGYEVKKQKL--STPVSSQANTTLPPEVSQCSAI 316
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI0018849840 (DNA topoisomerase 2-binding protein 1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018849840) HSP 1 Score: 153 bits (387), Expect = 5.670e-40 Identity = 74/161 (45.96%), Postives = 104/161 (64.60%), Query Frame = 1
Query: 1 DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVDRGKANSSTPTKQDQTMA 483
+GVTHLVAG S KY+VAV +E+ M WV+ VW+ S + V A DP+F+ CP G+ + VSQL+R DKE ++K +E +GG Y LE +KT+VLV S G+K + A++W IPCV +W++D +E+G+CL + Y SSTPTK + TMA
Sbjct: 157 EGVTHLVAGVVASPKYQVAVTREVPVMRAAWVDRVWEASCRQTVQATDPQFADLTCPPFQGLFICVSQLSRKDKEAIRKIIENNGGSYMTQLECEKTSVLVSPSMDGEKVTFARRWQIPCVVPEWLYDSVERGWCLGMEEYTTAVKAKLSSTPTK-NHTMA 316
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: A0A8K0JUE7_LADFU (Uncharacterized protein (Fragment) n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JUE7_LADFU) HSP 1 Score: 142 bits (358), Expect = 4.520e-38 Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = 1
Query: 7 VTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRV-DRGKANSSTPTKQDQTMAGLAEVSMCSTIL 519
VTHL+A SQKY+VA + I M WV VW+ E VNA DP+F+S++ PA G+ + SQ+++A+K+ + K + +GG YS LE +T VLV P+G KY AKKW+IPCV+ QWVFD GY L D Y + +A STP K L + SMCSTI+
Sbjct: 147 VTHLIANAVGSQKYKVAAERGIPIMSEDWVNAVWEAGLKENVNASDPQFASYKLPAFKGLLICASQISKAEKQKVMKVITENGGRYSPQLECKETNVLVIGDPSGTKYIFAKKWDIPCVTPQWVFDSASHGYSLPFDGYIPGEEVEAKCSTP-KLGGNPGVLPDFSMCSTIV 317
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Match: UPI001ED877B3 (DNA topoisomerase 2-binding protein 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED877B3) HSP 1 Score: 141 bits (356), Expect = 9.050e-36 Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = 1
Query: 7 VTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRFSSHRCPALLGVTVSVSQLNRADKELLKKSVETHGGVYSGVLEMDKTTVLVCTSPAGDKYSHAKKWNIPCVSSQWVFDCIEKGYCLQTDSYRVD---RGKANSSTPTKQDQTMAGLAEVSMCSTI 516
VTHL+A SQKY+VAV +++ M WV VW+ TE V A+DP+FS + PA G+ V SQ+ + DK+ L K V GG YS L+ +T VLV +G K++ AKKW IPCV+ QWV+D G CL +SY V+ KA STP + +T L + SMCSTI
Sbjct: 147 VTHLIADGVGSQKYKVAVERKVPIMTEEWVSSVWESGLTENVCALDPQFSHFKLPAFKGIVVCASQITKKDKQNLMKLVTGGGGQYSPQLDSKETGVLVIGDASGTKFTFAKKWGIPCVTPQWVYDSSACGLCLPFESYAVEGEPSAKALCSTP-EAGKTQDALPDFSMCSTI 318 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104228.680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig104228.680.1 >prot_Ecto-sp8_S_contig104228.680.1 ID=prot_Ecto-sp8_S_contig104228.680.1|Name=mRNA_Ecto-sp8_S_contig104228.680.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp DGVTHLVAGTARSQKYEVAVGKEISCMLPRWVEEVWKVSNTEIVNAVDPRback to top mRNA from alignment at Ecto-sp8_S_contig104228:2..520- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig104228.680.1 ID=mRNA_Ecto-sp8_S_contig104228.680.1|Name=mRNA_Ecto-sp8_S_contig104228.680.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104228:2..520- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104228:2..520- >mRNA_Ecto-sp8_S_contig104228.680.1 ID=mRNA_Ecto-sp8_S_contig104228.680.1|Name=mRNA_Ecto-sp8_S_contig104228.680.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104228:2..520- (Ectocarpus species8 EcLAC_412)back to top |