mRNA_Ecto-sp8_S_contig104097.667.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104097.667.1
Unique NamemRNA_Ecto-sp8_S_contig104097.667.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A6H5J4X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4X6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.200e-28
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQ+
Sbjct:   57 LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQI 110
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: D8LRR5_ECTSI (Similar to suppressor of ypt1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR5_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.370e-28
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQ+
Sbjct:  134 LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQI 187
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A835Z163_9STRA (Sec1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z163_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.300e-13
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    4 LARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LARE LA G V+ IS+++DQ L FV+LE RLFSL++PGS++ YNDP  PD  +
Sbjct:  140 LAREALAGGGVNAISRVYDQYLHFVALEPRLFSLNQPGSFLAYNDPAAPDTAI 192
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A8J5HGN6_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HGN6_ZINOF)

HSP 1 Score: 63.5 bits (153), Expect = 2.220e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 LARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LAR TL   SV  ISK++DQ LEFVSLE  LFSL +P +YVQ NDP+  D ++
Sbjct:  129 LARRTLEMDSVHRISKVYDQYLEFVSLEDGLFSLAQPKTYVQINDPSAGDREI 181
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: K3WZC7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZC7_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 5.680e-10
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LLAR ++  G   MISK++DQ   FVSLE  LFSL+ P SY  YNDPT  D Q+
Sbjct:  129 LLARLSVEAGCTSMISKVYDQYTNFVSLEPSLFSLNLPNSYRAYNDPTVQDKQI 182
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A4Y7J1L1_PAPSO (Uncharacterized protein n=3 Tax=Papaveroideae TaxID=1462614 RepID=A0A4Y7J1L1_PAPSO)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    4 LARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LA  TL   S+  ISK+FDQ LEFV+LE  LFSL +P  YVQ NDP+  D ++
Sbjct:  121 LASGTLKTDSIQRISKVFDQYLEFVTLEDNLFSLAQPSCYVQLNDPSAGDQEI 173
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A7S2FGC0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGC0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 LARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            L RE +A  SV ++SK++DQ L+FV LE R+F+L+RP SY+ YN     DA+V
Sbjct:  123 LGRELVASNSVQVVSKVYDQYLDFVGLEQRVFTLNRPNSYLAYNRQGVTDAEV 175
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A804IH62_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A804IH62_MUSAM)

HSP 1 Score: 61.2 bits (147), Expect = 1.450e-9
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 LARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LAR TL + +V  ISK++DQ LEFVSLE+  FSL +P +YVQ NDP+  + ++
Sbjct:  127 LARRTLEKDAVHRISKVYDQYLEFVSLENGFFSLAQPKTYVQINDPSAGEREI 179
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A6I9RZM4_ELAGV (SEC1 family transport protein SLY1 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RZM4_ELAGV)

HSP 1 Score: 60.8 bits (146), Expect = 1.980e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 LARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            LA +TL + +V  ISKI+DQ LEFV+LE  LFSL +P +YVQ NDP+  D ++
Sbjct:  126 LALKTLEKDAVHRISKIYDQYLEFVTLEDSLFSLAQPKTYVQINDPSAGDREI 178
[Close]
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Match: A0A3R7FBF3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7FBF3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.340e-9
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   13 ETLAEGSVD-----MISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCPDAQV 162
            ET A+G VD     MISK+FDQ+  FVSLE +LFSL++PGSYV  ND    DA +
Sbjct:  223 ETFAKGCVDAGCTAMISKVFDQHANFVSLEPQLFSLNQPGSYVACNDAHSSDATI 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104097.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J4X6_9PHAE3.200e-2898.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRR5_ECTSI5.370e-2898.15Similar to suppressor of ypt1 n=1 Tax=Ectocarpus s... [more]
A0A835Z163_9STRA4.300e-1358.49Sec1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A8J5HGN6_ZINOF2.220e-1058.49Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
K3WZC7_GLOUD5.680e-1055.56Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A4Y7J1L1_PAPSO1.060e-954.72Uncharacterized protein n=3 Tax=Papaveroideae TaxI... [more]
A0A7S2FGC0_9STRA1.060e-950.94Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A804IH62_MUSAM1.450e-952.83(wild Malaysian banana) hypothetical protein n=3 T... [more]
A0A6I9RZM4_ELAGV1.980e-954.72SEC1 family transport protein SLY1 n=4 Tax=Arecace... [more]
A0A3R7FBF3_9STRA3.340e-956.36Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104097contigEcto-sp8_S_contig104097:356..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score113.2
Seed ortholog evalue3.8e-23
Seed eggNOG ortholog2880.D8LRR5
Preferred nameSCFD1
Model size165
KEGG koko:K19998
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0000149,GO:0000902,GO:0001666,GO:0003002,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006892,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006950,GO:0006996,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008104,GO:0008150,GO:0009628,GO:0009636,GO:0009653,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009953,GO:0009966,GO:0009987,GO:0010506,GO:0010507,GO:0010638,GO:0010639,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016241,GO:0016242,GO:0019222,GO:0019905,GO:0022406,GO:0022607,GO:0023051,GO:0030134,GO:0030135,GO:0031090,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031334,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0033036,GO:0033043,GO:0034613,GO:0035220,GO:0035222,GO:0035295,GO:0035542,GO:0035543,GO:0036293,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044089,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046578,GO:0046903,GO:0046907,GO:0047485,GO:0048190,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048278,GO:0048280,GO:0048284,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051056,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070201,GO:0070482,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090087,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0140029,GO:0140056,GO:1901998,GO:1902115,GO:1902116,GO:1902531,GO:1902902,GO:2000785
Exons1
EggNOG free text desc.vesicle docking involved in exocytosis
EggNOG OGsCOG5158@1,KOG1301@2759
Cds size165
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.488578-CDS-Ecto-sp8_S_contig104097:355..5201681143140.488578-CDS-Ecto-sp8_S_contig104097:355..520Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104097 356..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104097.667.1prot_Ecto-sp8_S_contig104097.667.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104097 356..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104097.667.1

>prot_Ecto-sp8_S_contig104097.667.1 ID=prot_Ecto-sp8_S_contig104097.667.1|Name=mRNA_Ecto-sp8_S_contig104097.667.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=55bp
LLARETLAEGSVDMISKIFDQNLEFVSLEHRLFSLDRPGSYVQYNDPTCP
DAQV*
back to top

mRNA from alignment at Ecto-sp8_S_contig104097:356..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104097.667.1 ID=mRNA_Ecto-sp8_S_contig104097.667.1|Name=mRNA_Ecto-sp8_S_contig104097.667.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104097:356..520- (Ectocarpus species8 EcLAC_412)
CTCCTGGCGCGAGAAACCTTGGCGGAAGGCAGCGTAGACATGATCTCCAA
GATTTTTGACCAGAACCTTGAGTTCGTTTCCTTGGAACACCGCCTTTTCA
GCCTCGACCGACCGGGATCGTACGTGCAGTACAACGACCCGACCTGCCCA
GACGCCCAGGTATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104097:356..520-

>mRNA_Ecto-sp8_S_contig104097.667.1 ID=mRNA_Ecto-sp8_S_contig104097.667.1|Name=mRNA_Ecto-sp8_S_contig104097.667.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104097:356..520- (Ectocarpus species8 EcLAC_412)
CTCCTGGCGCGAGAAACCTTGGCGGAAGGCAGCGTAGACATGATCTCCAA
GATTTTTGACCAGAACCTTGAGTTCGTTTCCTTGGAACACCGCCTTTTCA
GCCTCGACCGACCGGGATCGTACGTGCAGTACAACGACCCGACCTGCCCA
GACGCCCAGGTATAG
back to top