mRNA_Ecto-sp8_S_contig104069.663.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104069.663.1
Unique NamemRNA_Ecto-sp8_S_contig104069.663.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: UPI0015937923 (hypothetical protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI0015937923)

HSP 1 Score: 92.8 bits (229), Expect = 1.610e-22
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 MRYAIALSSLIISSLAIPAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSSGKVA 162
            MRYAIALSSLIISSLA+PAAFAQSSGTTVAKDGSCPTGFKSSGS+CKS SGKVA
Sbjct:    1 MRYAIALSSLIISSLAVPAAFAQSSGTTVAKDGSCPTGFKSSGSACKSGSGKVA 54          
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: A0A127MCQ0_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MCQ0_9SPHN)

HSP 1 Score: 84.7 bits (208), Expect = 2.470e-19
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    1 MRYAIALSSLIISSLAIPAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSSGKVA 162
            MRYAIALSSL+ISS  IP AFAQSS TTVAK+GSCP+GFKSSGSSCKSSSGKVA
Sbjct:    1 MRYAIALSSLVISSFVIPTAFAQSSDTTVAKNGSCPSGFKSSGSSCKSSSGKVA 54          
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: A0A2G2D6X7_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2D6X7_9SPHN)

HSP 1 Score: 78.6 bits (192), Expect = 6.590e-17
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 MRYAIALSSLIISSLAIPAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSSGKV 159
            MR  IALSSLI+SSLAIP AFAQSS  TVAKDGSCPTGFKSSGSSC+SSSG V
Sbjct:    1 MRAVIALSSLILSSLAIPVAFAQSSSMTVAKDGSCPTGFKSSGSSCQSSSGAV 53          
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: UPI000225EE18 (hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 TaxID=517722 RepID=UPI000225EE18)

HSP 1 Score: 61.2 bits (147), Expect = 4.250e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 MRYAIALSSLIISSLAIPAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSSGKVA 162
            MR  I  S+ +++    PAA+AQSSGT VAKDG+CPTGF++SGS C SSSGKVA
Sbjct:    1 MRIFIVASAALLAFGTAPAAYAQSSGTEVAKDGACPTGFRASGSKCVSSSGKVA 54          
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: UPI001AA07C36 (hypothetical protein n=1 Tax=Parasphingorhabdus sp. JHSY0214 TaxID=2806553 RepID=UPI001AA07C36)

HSP 1 Score: 60.5 bits (145), Expect = 8.710e-10
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   13 IALSSLIISSLAIPAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSSGKV 159
            IA +++  S L  P AFAQSS T+V KDGSCPTGFK+SG +CKSSSGKV
Sbjct:    7 IAAAAIATSGLYAPLAFAQSSSTSVTKDGSCPTGFKASGGNCKSSSGKV 55          
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: A0A6I4V2W0_9SPHN (Uncharacterized protein n=1 Tax=Pontixanthobacter luteolus TaxID=295089 RepID=A0A6I4V2W0_9SPHN)

HSP 1 Score: 54.3 bits (129), Expect = 2.060e-7
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 MRYAIALSSLIISSLAIPAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSS 150
            MR+   L ++ +S    PAA+AQSS + V KDGSCP GFK+SGSSCKSSS
Sbjct:    1 MRFTAILGAIALSVGTAPAAYAQSSSSEVTKDGSCPKGFKASGSSCKSSS 50          
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: A0A845AXK2_9SPHN (Uncharacterized protein n=1 Tax=Parerythrobacter jejuensis TaxID=795812 RepID=A0A845AXK2_9SPHN)

HSP 1 Score: 52.0 bits (123), Expect = 1.670e-6
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 MRYAIALSSLIISSLAIPA-AFAQSSGTTVAKDGSCPTGFKSSGSSCKSSSGKVA 162
            MR A    S  ++  A PA AFAQSS + V +DGSCPTGFKSSGSSCKSS GKVA
Sbjct:    1 MRIAFLTLSAALALSAGPAPAFAQSSSSEVERDGSCPTGFKSSGSSCKSS-GKVA 54          
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Match: A0A1C7DB99_9SPHN (Uncharacterized protein n=1 Tax=Paraurantiacibacter namhicola TaxID=645517 RepID=A0A1C7DB99_9SPHN)

HSP 1 Score: 49.3 bits (116), Expect = 1.850e-5
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   52 PAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSSGKVA 162
            P A AQSS T V +DGSCPTGFK+SGS C S++G VA
Sbjct:   18 PVAMAQSSSTEVPRDGSCPTGFKASGSDCVSNNGSVA 54          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104069.663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI00159379231.610e-2294.44hypothetical protein n=1 Tax=Parasphingorhabdus fl... [more]
A0A127MCQ0_9SPHN2.470e-1987.04Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A2G2D6X7_9SPHN6.590e-1784.91Uncharacterized protein n=1 Tax=Sphingopyxis sp. T... [more]
UPI000225EE184.250e-1062.96hypothetical protein n=1 Tax=Citromicrobium sp. JL... [more]
UPI001AA07C368.710e-1067.35hypothetical protein n=1 Tax=Parasphingorhabdus sp... [more]
A0A6I4V2W0_9SPHN2.060e-760.00Uncharacterized protein n=1 Tax=Pontixanthobacter ... [more]
A0A845AXK2_9SPHN1.670e-665.45Uncharacterized protein n=1 Tax=Parerythrobacter j... [more]
A0A1C7DB99_9SPHN1.850e-567.57Uncharacterized protein n=1 Tax=Paraurantiacibacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104069contigEcto-sp8_S_contig104069:159..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categorychloroplast
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.1931956-CDS-Ecto-sp8_S_contig104069:158..4611681143140.1931956-CDS-Ecto-sp8_S_contig104069:158..461Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104069 159..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104069.663.1prot_Ecto-sp8_S_contig104069.663.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104069 159..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104069.663.1

>prot_Ecto-sp8_S_contig104069.663.1 ID=prot_Ecto-sp8_S_contig104069.663.1|Name=mRNA_Ecto-sp8_S_contig104069.663.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
MRYAIALSSLIISSLAIPAAFAQSSGTTVAKDGSCPTGFKSSGSSCKSSS
GKVAIAKIGSCPSGFKSSANYCVGDKGDYAEIRSGSCSGGLKTSGKYCVK
*
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mRNA from alignment at Ecto-sp8_S_contig104069:159..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104069.663.1 ID=mRNA_Ecto-sp8_S_contig104069.663.1|Name=mRNA_Ecto-sp8_S_contig104069.663.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104069:159..461+ (Ectocarpus species8 EcLAC_412)
ATGCGCTACGCAATCGCCCTGTCATCACTGATCATCTCCAGCCTCGCTAT TCCGGCGGCCTTCGCCCAGTCAAGCGGCACCACCGTTGCCAAGGACGGTA GCTGCCCAACCGGATTCAAATCGTCGGGAAGCTCATGCAAATCCAGCTCC GGCAAAGTGGCCATCGCCAAAATCGGTTCGTGCCCGTCCGGCTTCAAATC CTCCGCCAATTACTGCGTCGGCGACAAAGGTGACTATGCCGAAATCAGAA GCGGCAGCTGCTCCGGTGGATTGAAAACATCCGGCAAATATTGCGTAAAA TAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104069:159..461+

>mRNA_Ecto-sp8_S_contig104069.663.1 ID=mRNA_Ecto-sp8_S_contig104069.663.1|Name=mRNA_Ecto-sp8_S_contig104069.663.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104069:159..461+ (Ectocarpus species8 EcLAC_412)
ATGCGCTACGCAATCGCCCTGTCATCACTGATCATCTCCAGCCTCGCTAT
TCCGGCGGCCTTCGCCCAGTCAAGCGGCACCACCGTTGCCAAGGACGGTA
GCTGCCCAACCGGATTCAAATCGTCGGGAAGCTCATGCAAATCCAGCTCC
GGCAAAGTGGCCATCGCCAAAATCGGTTCGTGCCCGTCCGGCTTCAAATC
CTCCGCCAATTACTGCGTCGGCGACAAAGGTGACTATGCCGAAATCAGAA
GCGGCAGCTGCTCCGGTGGATTGAAAACATCCGGCAAATATTGCGTAAAA
TAA
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