mRNA_Ecto-sp8_S_contig104061.661.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig104061.661.1
Unique Name	mRNA_Ecto-sp8_S_contig104061.661.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: A0A0F9EYB8_9ZZZZ (Uncharacterized protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A0F9EYB8_9ZZZZ)

HSP 1 Score: 283 bits (724), Expect = 4.430e-95
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKY DMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA
Sbjct:  110 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 249

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: A0A259D2E2_9RHOB (Uncharacterized protein (Fragment) n=1 Tax=Rhodobacterales bacterium 17-64-5 TaxID=1970556 RepID=A0A259D2E2_9RHOB)

HSP 1 Score: 280 bits (715), Expect = 2.690e-94
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFLAAKRRAETEVMLPAGPKVALTGG+DFNDHRLIWGKLDQVRTKY DMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPG GIQENLADKAKKLGIPVMKFEKGA
Sbjct:   70 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGSDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGNGIQENLADKAKKLGIPVMKFEKGA 209

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: A0A0A0HFZ5_9RHOB (Uncharacterized protein n=1 Tax=Roseovarius mucosus DSM 17069 TaxID=1288298 RepID=A0A0A0HFZ5_9RHOB)

HSP 1 Score: 277 bits (708), Expect = 4.170e-94
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFLAAKRRAE EVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKY DMVLLHGGSPKGAELIAAKWAE+RGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKA +LGIPVMKFEKGA
Sbjct:   11 LIDSRDFLAAKRRAEAEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGAELIAAKWAESRGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKASRLGIPVMKFEKGA 150

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: A3VKU6_9RHOB (Uncharacterized protein n=154 Tax=root TaxID=1 RepID=A3VKU6_9RHOB)

HSP 1 Score: 280 bits (715), Expect = 1.180e-92
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKY DMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKL IPVMKFEKGA
Sbjct:  184 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLCIPVMKFEKGA 323

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: UPI00145535B6 (DUF2493 domain-containing protein n=1 Tax=Rhodobacter tardus TaxID=2699202 RepID=UPI00145535B6)

HSP 1 Score: 277 bits (709), Expect = 6.310e-92
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRD+LAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKY DMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPG GIQENLADKAKKLGIPV+KFE+GA
Sbjct:  171 LIDSRDYLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGNGIQENLADKAKKLGIPVVKFERGA 310

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: A0A4Z0LEV3_9RHOB (DUF2493 domain-containing protein (Fragment) n=1 Tax=Tabrizicola sp. WMC-M-20 TaxID=2528693 RepID=A0A4Z0LEV3_9RHOB)

HSP 1 Score: 276 bits (705), Expect = 7.170e-92
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFLA KRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKY DMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPG GIQENLADKAKKLG PVMK EKGA
Sbjct:  132 LIDSRDFLAVKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGNGIQENLADKAKKLGFPVMKLEKGA 271

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: A0A159Z8Z8_9RHOB (Uncharacterized protein n=1 Tax=Frigidibacter mobilis TaxID=1335048 RepID=A0A159Z8Z8_9RHOB)

HSP 1 Score: 280 bits (717), Expect = 2.210e-91
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKG 417
            LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKY DMVLLHGGSPKGAELIAAKWAE+RGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKG
Sbjct:  171 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGAELIAAKWAESRGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKG 309

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: L0NN53_9HYPH (Uncharacterized protein n=21 Tax=Alphaproteobacteria TaxID=28211 RepID=L0NN53_9HYPH)

HSP 1 Score: 275 bits (704), Expect = 8.300e-91
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFLAAKRR ETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKY DMVLLHGGSPKG ELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPG GIQENLADKAKKLGIPV+KFE+GA
Sbjct:  197 LIDSRDFLAAKRRTETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYPDMVLLHGGSPKGTELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGNGIQENLADKAKKLGIPVVKFERGA 336

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: C8S1Q3_9RHOB (Uncharacterized protein n=19 Tax=Bacteria TaxID=2 RepID=C8S1Q3_9RHOB)

HSP 1 Score: 264 bits (675), Expect = 9.460e-87
Identity = 128/140 (91.43%), Postives = 134/140 (95.71%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFL+AKRR+ETEVMLP G K+ALTGGTDFNDHRLIWGKLDQV+ KY DMVLLHGGSPKGAELIAAKWAEAR VTQVAFKPDWTKHAKAAPFKRNDA+LDVLPVGVLVFPG GIQENLADKAKKLGIPV+KFEKGA
Sbjct:  172 LIDSRDFLSAKRRSETEVMLPQGTKIALTGGTDFNDHRLIWGKLDQVQAKYPDMVLLHGGSPKGAELIAAKWAEARKVTQVAFKPDWTKHAKAAPFKRNDAILDVLPVGVLVFPGNGIQENLADKAKKLGIPVLKFEKGA 311

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BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Match: A0A2W5RZW6_CERSP (Uncharacterized protein n=1 Tax=Cereibacter sphaeroides TaxID=1063 RepID=A0A2W5RZW6_CERSP)

HSP 1 Score: 260 bits (665), Expect = 3.120e-85
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 1

Query:    1 LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTKYADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRNDAMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA 420
            LIDSRDFLAAKRRAETEVMLP GPK+ALTGGTDFNDHRLIW KLDQV+ KY DMVLLHGGSPKGAELIAAKWAEAR VTQVAFKPDWT+HAKAAPFKRND MLDVLPVG+LVFPG GIQENLADKA+ LGIPV+KFE+GA
Sbjct:  172 LIDSRDFLAAKRRAETEVMLPPGPKIALTGGTDFNDHRLIWAKLDQVQAKYPDMVLLHGGSPKGAELIAAKWAEARKVTQVAFKPDWTRHAKAAPFKRNDQMLDVLPVGLLVFPGNGIQENLADKARNLGIPVLKFERGA 311

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig104061.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0F9EYB8_9ZZZZ	4.430e-95	99.29	Uncharacterized protein (Fragment) n=2 Tax=root Ta...	[more]
A0A259D2E2_9RHOB	2.690e-94	97.86	Uncharacterized protein (Fragment) n=1 Tax=Rhodoba...	[more]
A0A0A0HFZ5_9RHOB	4.170e-94	96.43	Uncharacterized protein n=1 Tax=Roseovarius mucosu...	[more]
A3VKU6_9RHOB	1.180e-92	98.57	Uncharacterized protein n=154 Tax=root TaxID=1 Rep...	[more]
UPI00145535B6	6.310e-92	96.43	DUF2493 domain-containing protein n=1 Tax=Rhodobac...	[more]
A0A4Z0LEV3_9RHOB	7.170e-92	96.43	DUF2493 domain-containing protein (Fragment) n=1 T...	[more]
A0A159Z8Z8_9RHOB	2.210e-91	98.56	Uncharacterized protein n=1 Tax=Frigidibacter mobi...	[more]
L0NN53_9HYPH	8.300e-91	95.71	Uncharacterized protein n=21 Tax=Alphaproteobacter...	[more]
C8S1Q3_9RHOB	9.460e-87	91.43	Uncharacterized protein n=19 Tax=Bacteria TaxID=2 ...	[more]
A0A2W5RZW6_CERSP	3.120e-85	89.29	Uncharacterized protein n=1 Tax=Cereibacter sphaer...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig104061	contig	Ecto-sp8_S_contig104061:99..521 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Bacteria
Stop	1
Start	0
Seed ortholog score	283.9
Seed ortholog evalue	4.2e-74
Seed eggNOG ortholog	1353537.TP2_15690
Model size	423
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	Protein of unknown function (DUF2493)
EggNOG OGs	1MW5M@1224,2C0ZE@1,2TQVZ@28211,2XM9S@285107,2Z7S6@2
Cds size	423
COG Functional cat.	S
Best tax level	Thioclava
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681143140.1639295-CDS-Ecto-sp8_S_contig104061:98..521	1681143140.1639295-CDS-Ecto-sp8_S_contig104061:98..521	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig104061 99..521 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig104061.661.1	prot_Ecto-sp8_S_contig104061.661.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig104061 99..521 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig104061:99..521-
coding sequence from alignment at Ecto-sp8_S_contig104061:99..521-

protein sequence of mRNA_Ecto-sp8_S_contig104061.661.1

>prot_Ecto-sp8_S_contig104061.661.1 ID=prot_Ecto-sp8_S_contig104061.661.1|Name=mRNA_Ecto-sp8_S_contig104061.661.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=141bp
LIDSRDFLAAKRRAETEVMLPAGPKVALTGGTDFNDHRLIWGKLDQVRTK
YADMVLLHGGSPKGAELIAAKWAEARGVTQVAFKPDWTKHAKAAPFKRND
AMLDVLPVGVLVFPGTGIQENLADKAKKLGIPVMKFEKGA*

mRNA from alignment at Ecto-sp8_S_contig104061:99..521-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig104061.661.1 ID=mRNA_Ecto-sp8_S_contig104061.661.1|Name=mRNA_Ecto-sp8_S_contig104061.661.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104061:99..521- (Ectocarpus species8 EcLAC_412)
CTGATCGACAGCCGCGACTTCCTTGCCGCCAAGCGCCGTGCGGAAACCGA
GGTGATGCTGCCCGCAGGACCCAAGGTCGCCCTCACCGGCGGGACCGACT
TCAACGATCACCGCCTGATCTGGGGCAAGCTCGATCAGGTCCGGACCAAG
TATGCCGACATGGTCCTTCTGCACGGGGGAAGCCCGAAGGGCGCAGAACT
CATCGCCGCCAAATGGGCCGAGGCCAGGGGCGTGACGCAGGTGGCCTTCA
AGCCCGATTGGACCAAGCATGCCAAAGCCGCCCCCTTCAAGCGCAACGAC
GCGATGCTCGATGTGCTGCCGGTGGGTGTCCTCGTCTTCCCGGGCACCGG
CATCCAGGAGAACCTTGCCGACAAGGCCAAAAAGCTCGGCATCCCGGTCA
TGAAGTTCGAGAAGGGGGCATGA

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104061:99..521-

>mRNA_Ecto-sp8_S_contig104061.661.1 ID=mRNA_Ecto-sp8_S_contig104061.661.1|Name=mRNA_Ecto-sp8_S_contig104061.661.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104061:99..521- (Ectocarpus species8 EcLAC_412)
CTGATCGACAGCCGCGACTTCCTTGCCGCCAAGCGCCGTGCGGAAACCGA
GGTGATGCTGCCCGCAGGACCCAAGGTCGCCCTCACCGGCGGGACCGACT
TCAACGATCACCGCCTGATCTGGGGCAAGCTCGATCAGGTCCGGACCAAG
TATGCCGACATGGTCCTTCTGCACGGGGGAAGCCCGAAGGGCGCAGAACT
CATCGCCGCCAAATGGGCCGAGGCCAGGGGCGTGACGCAGGTGGCCTTCA
AGCCCGATTGGACCAAGCATGCCAAAGCCGCCCCCTTCAAGCGCAACGAC
GCGATGCTCGATGTGCTGCCGGTGGGTGTCCTCGTCTTCCCGGGCACCGG
CATCCAGGAGAACCTTGCCGACAAGGCCAAAAAGCTCGGCATCCCGGTCA
TGAAGTTCGAGAAGGGGGCATGA