mRNA_Ecto-sp8_S_contig104056.659.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104056.659.1
Unique NamemRNA_Ecto-sp8_S_contig104056.659.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104056.659.1 vs. uniprot
Match: A0A846DPH3_9CYAN (Sulfotransferase family protein n=1 Tax=Moorena sp. SIO2B7 TaxID=2607823 RepID=A0A846DPH3_9CYAN)

HSP 1 Score: 138 bits (347), Expect = 7.030e-38
Identity = 71/148 (47.97%), Postives = 89/148 (60.14%), Query Frame = 1 
Query:    4 REGLADHFRSHPHRGSMIVHPERKIIYMKSAKTAGTSILRKTLEPQVGGFIHEKDDPDQFSSWLQDIDDAALGEYFIFCVVRNPWDRFSSLATYFNIPLPQLCSDFANLCATIETLSAHALPQHIYTHVKGHEGGQTFCDHIVSFENL 447
            R+GL+ + RSH H+G +IV    K IYMK  KTAGTSILR  LE ++ G IH KD P+QF  W+  I D  L +YFIF VVRNPWDR  S++ YFNIP     ++          L  H+LP H+YTH  G +    F D I  FE+L
Sbjct:    7 RKGLSTYLRSHDHQGGIIVCEPLKFIYMKPTKTAGTSILRAGLEKRLSGIIHHKDHPEQFKEWINRITDEELEDYFIFSVVRNPWDRLVSVSAYFNIPFKDFVNNIDKYWKNYN-LRIHSLPLHLYTHCNGEQ----FVDMICRFESL 149
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BLAST of mRNA_Ecto-sp8_S_contig104056.659.1 vs. uniprot
Match: A0A517RFU3_9PLAN (Sulfotransferase family protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RFU3_9PLAN)

HSP 1 Score: 126 bits (317), Expect = 9.770e-34
Identity = 70/151 (46.36%), Postives = 87/151 (57.62%), Query Frame = 1 
Query:    4 REGLADHFRSHPHRGSMIVHPERKIIYMKSAKTAGTSILRKTLEPQVGGFIHEKDDPDQFSSWLQDIDDAALGEYFIFCVVRNPWDRFSSLATYFNIPLPQLCSDFANLCA---TIETLSAHALPQHIYTHVKGHEGGQTFCDHIVSFENL 447
            R GLAD+ R+H H G +IV  + K +YMK AKTAGTSILR+ L+    G  + KDDP +F  W+  I D  L EYFIF V RNPWDR  S+A+YF IP+     DF N        + +  H+LP   YTH  GH     F D +  FE L
Sbjct:    7 RTGLADYLRAHEHPGGIIVSDKHKFLYMKPAKTAGTSILRECLQSHPLGLFNVKDDPKRFQEWINAIRDEELEEYFIFAVARNPWDRVVSIASYFKIPV----RDFINRIDFHWQNKAIKYHSLPISSYTHHDGHP----FVDFVCRFETL 149
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BLAST of mRNA_Ecto-sp8_S_contig104056.659.1 vs. uniprot
Match: A0A2D6SVJ0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SVJ0_9PLAN)

HSP 1 Score: 124 bits (310), Expect = 4.160e-32
Identity = 66/148 (44.59%), Postives = 83/148 (56.08%), Query Frame = 1 
Query:    4 REGLADHFRSHPHRGSMIVHPERKIIYMKSAKTAGTSILRKTLEPQVGGFIHEKDDPDQFSSWLQDIDDAALGEYFIFCVVRNPWDRFSSLATYFNIPLPQLCSDFANLCATIETLSAHALPQHIYTHVKGHEGGQTFCDHIVSFENL 447
            R G+A+ FRSHPH G ++V    + +YMK A+T GTSILR  LE       + K+   +F  W+ DI D AL EY IF  VRNPWDR  S+A+YF + L Q   D+  L A   TL  HA P H YTH    +  +   D I  FE L
Sbjct:   68 RTGVAEFFRSHPHPGGIVVSERPRFVYMKPARTGGTSILRGALEEMSCDVFNIKNHRRRFEQWMADITDDALREYRIFAFVRNPWDRAVSIASYFGLDLRQFVMDYERLTAEDPTLKGHAFPLHWYTH----DAERRIVDFIGRFERL 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104056.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A846DPH3_9CYAN7.030e-3847.97Sulfotransferase family protein n=1 Tax=Moorena sp... [more]
A0A517RFU3_9PLAN9.770e-3446.36Sulfotransferase family protein n=1 Tax=Gimesia al... [more]
A0A2D6SVJ0_9PLAN4.160e-3244.59Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104056contigEcto-sp8_S_contig104056:73..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.04506-CDS-Ecto-sp8_S_contig104056:72..5221681143140.04506-CDS-Ecto-sp8_S_contig104056:72..522Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104056 73..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104056.659.1prot_Ecto-sp8_S_contig104056.659.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104056 73..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104056.659.1

>prot_Ecto-sp8_S_contig104056.659.1 ID=prot_Ecto-sp8_S_contig104056.659.1|Name=mRNA_Ecto-sp8_S_contig104056.659.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=150bp
MREGLADHFRSHPHRGSMIVHPERKIIYMKSAKTAGTSILRKTLEPQVGG
FIHEKDDPDQFSSWLQDIDDAALGEYFIFCVVRNPWDRFSSLATYFNIPL
PQLCSDFANLCATIETLSAHALPQHIYTHVKGHEGGQTFCDHIVSFENLD
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mRNA from alignment at Ecto-sp8_S_contig104056:73..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104056.659.1 ID=mRNA_Ecto-sp8_S_contig104056.659.1|Name=mRNA_Ecto-sp8_S_contig104056.659.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104056:73..522+ (Ectocarpus species8 EcLAC_412)
ATGAGAGAGGGCCTGGCCGATCATTTTCGGTCCCACCCGCATCGCGGATC
GATGATCGTTCATCCTGAACGAAAGATCATCTATATGAAGTCGGCCAAAA
CTGCTGGTACTTCGATACTGCGCAAAACCCTGGAGCCACAAGTCGGCGGC
TTTATTCATGAAAAAGATGATCCAGACCAGTTTTCCAGTTGGCTGCAAGA
TATTGATGACGCCGCGCTGGGAGAGTACTTTATCTTCTGCGTCGTCCGCA
ATCCGTGGGACCGCTTCAGTTCGCTGGCGACCTATTTCAATATCCCGCTC
CCACAATTATGCAGCGATTTTGCTAATCTTTGCGCTACTATTGAAACGTT
GTCAGCACACGCCTTGCCGCAGCATATTTACACCCATGTTAAGGGGCATG
AGGGAGGGCAGACATTTTGTGATCACATTGTATCTTTCGAAAATCTTGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104056:73..522+

>mRNA_Ecto-sp8_S_contig104056.659.1 ID=mRNA_Ecto-sp8_S_contig104056.659.1|Name=mRNA_Ecto-sp8_S_contig104056.659.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104056:73..522+ (Ectocarpus species8 EcLAC_412)
ATGAGAGAGGGCCTGGCCGATCATTTTCGGTCCCACCCGCATCGCGGATC
GATGATCGTTCATCCTGAACGAAAGATCATCTATATGAAGTCGGCCAAAA
CTGCTGGTACTTCGATACTGCGCAAAACCCTGGAGCCACAAGTCGGCGGC
TTTATTCATGAAAAAGATGATCCAGACCAGTTTTCCAGTTGGCTGCAAGA
TATTGATGACGCCGCGCTGGGAGAGTACTTTATCTTCTGCGTCGTCCGCA
ATCCGTGGGACCGCTTCAGTTCGCTGGCGACCTATTTCAATATCCCGCTC
CCACAATTATGCAGCGATTTTGCTAATCTTTGCGCTACTATTGAAACGTT
GTCAGCACACGCCTTGCCGCAGCATATTTACACCCATGTTAAGGGGCATG
AGGGAGGGCAGACATTTTGTGATCACATTGTATCTTTCGAAAATCTTGAC
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