mRNA_Ecto-sp8_S_contig104055.658.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104055.658.1
Unique NamemRNA_Ecto-sp8_S_contig104055.658.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104055.658.1 vs. uniprot
Match: UPI0015935F77 (hypothetical protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI0015935F77)

HSP 1 Score: 73.6 bits (179), Expect = 2.930e-12
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  223 IAP-TQSAATPETLAEGGEADWGLLAALAALLGVGGAGAYAAARRRKNRGRN-----DAETLGRDPLPASMEKAIMPELRREQADP 462
            IAP +Q A + E +      DWGLLAALAALLG+GGAGAYA  RRRK+  R+     +A+  GRD  PA++ +AIMPELR + A+P
Sbjct:  190 IAPVSQPAVSQEAIPVDDATDWGLLAALAALLGIGGAGAYAVGRRRKSNDRSAAEIPEADVHGRDTFPAAINEAIMPELRDDTAEP 275
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BLAST of mRNA_Ecto-sp8_S_contig104055.658.1 vs. uniprot
Match: UPI001C27AA5F (hypothetical protein n=1 Tax=Sphingopyxis sp. BSNA05 TaxID=1236614 RepID=UPI001C27AA5F)

HSP 1 Score: 72.4 bits (176), Expect = 7.570e-12
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  235 QSAATPETLAEGGEADWGLLAALAALLGVGGAGAYAAARRRKNRGRNDAETLGRDPLPASMEKAIMPELRREQADP 462
            Q+ A+P+ ++    ADWGLLAALAALLG+GGAGAYAA+RRRKN+G   A T   DP+PA++  A  P  +    +P
Sbjct:  217 QTTASPDAVSGEAGADWGLLAALAALLGIGGAGAYAASRRRKNKGELAAATYDSDPVPATLTAAAAPMAKSHAVEP 292
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BLAST of mRNA_Ecto-sp8_S_contig104055.658.1 vs. uniprot
Match: A0A127MD07_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MD07_9SPHN)

HSP 1 Score: 72.0 bits (175), Expect = 1.040e-11
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:  223 IAPTQSAATPETLAEGGEADWGLLAALAALLGVGGAGAYAAARRRKNRGRNDAETLGRDPLPASMEKAIMPELRREQADPAPAEQVTAQPT 495
            I   ++AA+ E      + DW LLAALAALLGVGGAGAYAA+RRRK++GR      G +PLPAS+  A + E R+++ +P     V A+ T
Sbjct:  202 ITTPETAASTEAFRGETDTDWNLLAALAALLGVGGAGAYAASRRRKSKGRAATAERGANPLPASLSAATLSEARQDRVEPLARPTVDAEQT 292
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BLAST of mRNA_Ecto-sp8_S_contig104055.658.1 vs. uniprot
Match: A0A220W5Y0_9SPHN (Uncharacterized protein n=2 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220W5Y0_9SPHN)

HSP 1 Score: 70.5 bits (171), Expect = 3.600e-11
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:  220 GIAP-TQSAATPETLAEGGEADWGLLAALAALLGVGGAGAYAAARRRKNRGRNDAETLGRDPLPASMEKAIMPELRRE 450
            G+ P T+   +P+ L+   +ADWGLLAALAALLGV GAGAYAA+RRRK++G         +PLPAS+  A  P+  RE
Sbjct:  203 GVQPSTEVTTSPQVLSREADADWGLLAALAALLGVSGAGAYAASRRRKSKGEAATAVHSNEPLPASLTAAAQPDPARE 280
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BLAST of mRNA_Ecto-sp8_S_contig104055.658.1 vs. uniprot
Match: A0A653JC88_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JC88_9SPHN)

HSP 1 Score: 68.2 bits (165), Expect = 2.270e-10
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:  130 ASQPVSDPVVGGTASL--ATGVTRPVADIPDAGIAPTQSAATPETLAEGGEADWGLLAALAALLGVGGAGAYAAARRRKNRGRNDAETLGRDPLPASMEKAIMPELRR 447
            A  PV++PV    A++  A G+  PVA       AP +  ATP+  +    ADWGLLAALAALLG+GGAGAYAA+RRR    +++A   G DP+PAS     +P+ RR
Sbjct:  163 AQNPVAEPVSYNNAAVSEAVGLAAPVAATSAFQPAP-EITATPDVQSSEPGADWGLLAALAALLGIGGAGAYAASRRRN---KDEAAMRGTDPVPASPTAIAVPDERR 266
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BLAST of mRNA_Ecto-sp8_S_contig104055.658.1 vs. uniprot
Match: A0A2M7LG49_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LG49_9SPHN)

HSP 1 Score: 66.6 bits (161), Expect = 7.780e-10
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:  187 VTRPVADIPDAGIAPTQSAATPETLAEG----GEADWGLLAALAALLGVGGAGAYAAARRRK-NRGRNDAETLG---RDPLPASMEKAIMPELRREQADPA---PAEQVT 483
            V  PVA + +A  A   + AT ++ A       + DW LL ALAAL+G+GG GAY AARRRK NR   D +       DP+PAS+ +AIMPELRR+  D     PAE+VT
Sbjct:  167 VVPPVAGLDNATPALQPAPATSDSAATSTDMPADPDWTLLGALAALIGIGGVGAYTAARRRKSNRKSQDRQVAAPYPSDPVPASVTEAIMPELRRDTVDAEVLPPAEEVT 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104055.658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0015935F772.930e-1253.49hypothetical protein n=1 Tax=Parasphingorhabdus fl... [more]
UPI001C27AA5F7.570e-1252.63hypothetical protein n=1 Tax=Sphingopyxis sp. BSNA... [more]
A0A127MD07_9SPHN1.040e-1148.35Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A220W5Y0_9SPHN3.600e-1152.56Uncharacterized protein n=2 Tax=Sphingorhabdus sp.... [more]
A0A653JC88_9SPHN2.270e-1047.22Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A2M7LG49_9SPHN7.780e-1047.27Uncharacterized protein n=1 Tax=Sphingomonadales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104055contigEcto-sp8_S_contig104055:3..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.0228767-CDS-Ecto-sp8_S_contig104055:2..4971681143140.0228767-CDS-Ecto-sp8_S_contig104055:2..497Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104055 3..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104055.658.1prot_Ecto-sp8_S_contig104055.658.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104055 3..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104055.658.1

>prot_Ecto-sp8_S_contig104055.658.1 ID=prot_Ecto-sp8_S_contig104055.658.1|Name=mRNA_Ecto-sp8_S_contig104055.658.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=165bp
SEQQARKAAADKAAAAASKPAAKPAGRQPEPVADTVTTDGSTTASQPVSD
PVVGGTASLATGVTRPVADIPDAGIAPTQSAATPETLAEGGEADWGLLAA
LAALLGVGGAGAYAAARRRKNRGRNDAETLGRDPLPASMEKAIMPELRRE
QADPAPAEQVTAQPT
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mRNA from alignment at Ecto-sp8_S_contig104055:3..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104055.658.1 ID=mRNA_Ecto-sp8_S_contig104055.658.1|Name=mRNA_Ecto-sp8_S_contig104055.658.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104055:3..497+ (Ectocarpus species8 EcLAC_412)
AGCGAACAACAGGCCCGCAAGGCTGCCGCAGACAAGGCCGCAGCGGCAGC
GTCGAAACCTGCAGCCAAACCAGCTGGTCGTCAGCCCGAACCCGTTGCCG
ATACGGTCACCACTGATGGTAGTACAACTGCATCACAACCTGTGTCCGAT
CCTGTTGTCGGCGGAACAGCCAGTCTGGCGACCGGCGTCACTCGTCCGGT
AGCCGATATTCCGGATGCTGGAATTGCGCCAACGCAATCAGCGGCTACAC
CGGAAACGCTTGCTGAGGGTGGTGAGGCCGACTGGGGCTTGCTCGCTGCA
CTGGCCGCGCTACTCGGCGTTGGCGGGGCGGGTGCCTATGCTGCCGCTCG
GCGTCGCAAAAACAGAGGACGAAACGACGCCGAAACGCTTGGCAGGGATC
CCCTTCCAGCATCGATGGAGAAAGCGATAATGCCTGAGTTGCGTCGCGAA
CAGGCTGACCCCGCACCTGCCGAGCAGGTCACAGCACAGCCAACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104055:3..497+

>mRNA_Ecto-sp8_S_contig104055.658.1 ID=mRNA_Ecto-sp8_S_contig104055.658.1|Name=mRNA_Ecto-sp8_S_contig104055.658.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104055:3..497+ (Ectocarpus species8 EcLAC_412)
AGCGAACAACAGGCCCGCAAGGCTGCCGCAGACAAGGCCGCAGCGGCAGC
GTCGAAACCTGCAGCCAAACCAGCTGGTCGTCAGCCCGAACCCGTTGCCG
ATACGGTCACCACTGATGGTAGTACAACTGCATCACAACCTGTGTCCGAT
CCTGTTGTCGGCGGAACAGCCAGTCTGGCGACCGGCGTCACTCGTCCGGT
AGCCGATATTCCGGATGCTGGAATTGCGCCAACGCAATCAGCGGCTACAC
CGGAAACGCTTGCTGAGGGTGGTGAGGCCGACTGGGGCTTGCTCGCTGCA
CTGGCCGCGCTACTCGGCGTTGGCGGGGCGGGTGCCTATGCTGCCGCTCG
GCGTCGCAAAAACAGAGGACGAAACGACGCCGAAACGCTTGGCAGGGATC
CCCTTCCAGCATCGATGGAGAAAGCGATAATGCCTGAGTTGCGTCGCGAA
CAGGCTGACCCCGCACCTGCCGAGCAGGTCACAGCACAGCCAACC
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