mRNA_Ecto-sp8_S_contig104046.656.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104046.656.1
Unique NamemRNA_Ecto-sp8_S_contig104046.656.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: D8LJ00_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ00_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.100e-25
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:   16 QPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            +PYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR
Sbjct:  284 KPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 333          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: A0A7S2V0H1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0H1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.730e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   16 QPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTAL 159
            +PYFH+ +VAYM GL ATV VM+YF AAQPALFYLVPACLG + + AL
Sbjct:  297 KPYFHSGIVAYMLGLGATVFVMYYFNAAQPALFYLVPACLGVSMLVAL 344          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: F0WXD5_9STRA (Aspartyl protease family A22B putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WXD5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.710e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 FTRCGQPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            F    +P+FH+ LVAY+ GLA TV VMF+F AAQPAL YLVPACLG+  +TA  R
Sbjct:  278 FRSFKKPFFHSSLVAYVVGLATTVVVMFFFNAAQPALLYLVPACLGSALITAYIR 332          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: A0A7S0C0H1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0H1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.070e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   16 QPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            +PYFH+CL+AY  GLA T+ VM  F+AAQPAL YLVPACLG++ + A  R
Sbjct:  110 KPYFHSCLIAYFMGLATTLYVMIVFEAAQPALLYLVPACLGSSMMCAFAR 159          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: A0A024GET7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GET7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.470e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 FTRCGQPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            F    +P+FHA L AY+ GLA TV VMFYF AAQPAL YLVP+CLG+  +TA  R
Sbjct:  278 FRSFTKPFFHAGLCAYVLGLATTVVVMFYFNAAQPALLYLVPSCLGSALITAYVR 332          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: V5ER86_KALBG (Uncharacterized protein n=1 Tax=Kalmanozyma brasiliensis (strain GHG001) TaxID=1365824 RepID=V5ER86_KALBG)

HSP 1 Score: 68.6 bits (166), Expect = 3.670e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 FTRCGQPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            +TR  +PYF A LVAY+ GLA T+ VM +FKAAQPAL YL PAC GA  +TA  R
Sbjct:  307 YTRWSKPYFTATLVAYVAGLATTMGVMHFFKAAQPALLYLSPACTGAVFLTAALR 361          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: A0A7S0GC56_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GC56_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.690e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   16 QPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            +PYFH+CL+AY  GLA T+ VM  F+AAQPAL YLVPACLG++ + A  R
Sbjct:  122 KPYFHSCLIAYFMGLATTLYVMIVFEAAQPALLYLVPACLGSSMMCAFAR 171          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: A0A1E7FKI5_9STRA (Peptidase A22B, signal peptide peptidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKI5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.650e-12
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 FTRCGQPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            F    +PYF++C++AY+ GL  T+ VM YF+AAQPAL YLVPACLG++ + A+ R
Sbjct:  277 FDSFPKPYFYSCMIAYVAGLGTTLFVMIYFQAAQPALLYLVPACLGSSFLCAIVR 331          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: A0A081CCE6_PSEA2 (Signal peptide peptidase n=3 Tax=Moesziomyces TaxID=63261 RepID=A0A081CCE6_PSEA2)

HSP 1 Score: 68.2 bits (165), Expect = 5.040e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 FTRCGQPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            +TR  +PYF A L AY+ GLA T+ VM +FKAAQPAL YL PAC GA  +TA  R
Sbjct:  309 YTRFDKPYFRATLAAYVAGLATTMGVMHFFKAAQPALLYLSPACTGAVFITAALR 363          
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Match: A0A0F7RTH5_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Sporisorium scitamineum TaxID=49012 RepID=A0A0F7RTH5_9BASI)

HSP 1 Score: 67.8 bits (164), Expect = 5.280e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 FTRCGQPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGVTALWR 165
            +TR  +PYF A L AY+ GLA T+ VM +FKAAQPAL YL PAC GA  +TA  R
Sbjct:  214 YTRFDKPYFKATLAAYVAGLATTMGVMHFFKAAQPALLYLSPACTGAVFITAALR 268          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104046.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ00_ECTSI1.100e-2598.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V0H1_9STRA3.730e-1370.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0WXD5_9STRA9.710e-1361.82Aspartyl protease family A22B putative n=1 Tax=Alb... [more]
A0A7S0C0H1_9STRA3.070e-1262.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A024GET7_9STRA3.470e-1261.82Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
V5ER86_KALBG3.670e-1261.82Uncharacterized protein n=1 Tax=Kalmanozyma brasil... [more]
A0A7S0GC56_9STRA3.690e-1262.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FKI5_9STRA4.650e-1254.55Peptidase A22B, signal peptide peptidase n=1 Tax=F... [more]
A0A081CCE6_PSEA25.040e-1260.00Signal peptide peptidase n=3 Tax=Moesziomyces TaxI... [more]
A0A0F7RTH5_9BASI5.280e-1260.00Uncharacterized protein (Fragment) n=1 Tax=Sporiso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104046contigEcto-sp8_S_contig104046:32..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score103.2
Seed ortholog evalue3.9e-20
Seed eggNOG ortholog2880.D8LJ00
Model size165
KEGG koko:K09595
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.aspartic endopeptidase activity, intramembrane cleaving
EggNOG OGsKOG2443@1,KOG2443@2759
Cds size165
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143139.9579568-CDS-Ecto-sp8_S_contig104046:31..1961681143139.9579568-CDS-Ecto-sp8_S_contig104046:31..196Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104046 32..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104046.656.1prot_Ecto-sp8_S_contig104046.656.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104046 32..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104046.656.1

>prot_Ecto-sp8_S_contig104046.656.1 ID=prot_Ecto-sp8_S_contig104046.656.1|Name=mRNA_Ecto-sp8_S_contig104046.656.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=55bp
FTRCGQPYFHACLVAYMGGLAATVTVMFYFKAAQPALFYLVPACLGATGV
TALWR
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mRNA from alignment at Ecto-sp8_S_contig104046:32..196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104046.656.1 ID=mRNA_Ecto-sp8_S_contig104046.656.1|Name=mRNA_Ecto-sp8_S_contig104046.656.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104046:32..196- (Ectocarpus species8 EcLAC_412)
TTTACGCGATGCGGTCAGCCGTACTTCCACGCGTGCCTCGTTGCGTACAT GGGCGGGTTGGCGGCGACCGTGACGGTGATGTTCTACTTCAAGGCGGCGC AGCCGGCGCTCTTCTACCTCGTCCCGGCGTGCCTCGGGGCCACCGGCGTC ACTGCTCTGTGGCGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104046:32..196-

>mRNA_Ecto-sp8_S_contig104046.656.1 ID=mRNA_Ecto-sp8_S_contig104046.656.1|Name=mRNA_Ecto-sp8_S_contig104046.656.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104046:32..196- (Ectocarpus species8 EcLAC_412)
TTTACGCGATGCGGTCAGCCGTACTTCCACGCGTGCCTCGTTGCGTACAT
GGGCGGGTTGGCGGCGACCGTGACGGTGATGTTCTACTTCAAGGCGGCGC
AGCCGGCGCTCTTCTACCTCGTCCCGGCGTGCCTCGGGGCCACCGGCGTC
ACTGCTCTGTGGCGC
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