mRNA_Ecto-sp8_S_contig104037.655.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104037.655.1
Unique NamemRNA_Ecto-sp8_S_contig104037.655.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104037.655.1 vs. uniprot
Match: D7FML8_ECTSI (Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FML8_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 3.630e-58
Identity = 111/149 (74.50%), Postives = 111/149 (74.50%), Query Frame = 1 
Query:    1 ILRLGRRQLESLREEGHPYGESRVRDLRRLLAEGGGLPLLFPEHDVGFAYGGHGAALLAXXXXXXXXVGPPPT-----------------------------TGAFRAAPCSIRLGGRMPHFFLRPPSSSSSSLLSTVDLPDQIRGLLL 360
            ILRLGRRQLESLREEGHPYGESRVRDLRRLLAEGGGLPLLFPEHDVGF YGGHGAALLA        VGPPPT                             TGAFRAAPCSIRLGGRMPHFFLRPPSSSSSSLLSTVDLPDQIRGLLL
Sbjct:  536 ILRLGRRQLESLREEGHPYGESRVRDLRRLLAEGGGLPLLFPEHDVGFTYGGHGAALLAASGGRAAGVGPPPTSRSSRPLPAAGFSSRPPAVRRNGQGHGDNTGAFRAAPCSIRLGGRMPHFFLRPPSSSSSSLLSTVDLPDQIRGLLL 684
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104037.655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FML8_ECTSI3.630e-5874.50Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104037contigEcto-sp8_S_contig104037:52..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score203.8
Seed ortholog evalue4.6e-50
Seed eggNOG ortholog2880.D7FML8
Model size360
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
Cds size360
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143139.9126797-CDS-Ecto-sp8_S_contig104037:51..2691681143139.9126797-CDS-Ecto-sp8_S_contig104037:51..269Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104037 52..269 +
1681143139.9225771-CDS-Ecto-sp8_S_contig104037:356..4981681143139.9225771-CDS-Ecto-sp8_S_contig104037:356..498Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104037 357..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104037.655.1prot_Ecto-sp8_S_contig104037.655.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104037 52..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104037.655.1

>prot_Ecto-sp8_S_contig104037.655.1 ID=prot_Ecto-sp8_S_contig104037.655.1|Name=mRNA_Ecto-sp8_S_contig104037.655.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=120bp
ILRLGRRQLESLREEGHPYGESRVRDLRRLLAEGGGLPLLFPEHDVGFAY
GGHGAALLAAGGGRAAGVGPPPTTGAFRAAPCSIRLGGRMPHFFLRPPSS
SSSSLLSTVDLPDQIRGLLL
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mRNA from alignment at Ecto-sp8_S_contig104037:52..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104037.655.1 ID=mRNA_Ecto-sp8_S_contig104037.655.1|Name=mRNA_Ecto-sp8_S_contig104037.655.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=447bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104037:52..498+ (Ectocarpus species8 EcLAC_412)
ATCCTCCGCCTCGGCCGCCGTCAGCTGGAGAGCCTGCGGGAAGAGGGCCA
CCCGTACGGCGAATCGCGCGTCCGAGACTTGCGCCGACTGCTGGCTGAGG
GCGGGGGGCTGCCCCTCCTCTTCCCCGAACACGACGTGGGTTTTGCGTAC
GGTGGCCACGGCGCGGCGCTGCTCGCGGCTGGTGGTGGCAGGGCGGCAGG
GGTAGGACCCCCGCCAACGTCACGGTCGTCGAGGCCGTTGCCAGCGACGG
GATTTTCATCGCGATCACCAGCAGTCCGGCGCAACGGTCAAGGACACGGT
GACAGCACCGGTGCGTTTCGTGCTGCACCGTGCAGCATACGGCTCGGAGG
ACGAATGCCCCACTTTTTCTTGAGGCCACCTTCCTCTTCTTCTTCTTCCT
TGCTCTCCACCGTGGACCTTCCGGACCAGATTCGAGGACTGCTGCTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104037:52..498+

>mRNA_Ecto-sp8_S_contig104037.655.1 ID=mRNA_Ecto-sp8_S_contig104037.655.1|Name=mRNA_Ecto-sp8_S_contig104037.655.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104037:52..498+ (Ectocarpus species8 EcLAC_412)
ATCCTCCGCCTCGGCCGCCGTCAGCTGGAGAGCCTGCGGGAAGAGGGCCA
CCCGTACGGCGAATCGCGCGTCCGAGACTTGCGCCGACTGCTGGCTGAGG
GCGGGGGGCTGCCCCTCCTCTTCCCCGAACACGACGTGGGTTTTGCGTAC
GGTGGCCACGGCGCGGCGCTGCTCGCGGCTGGTGGTGGCAGGGCGGCAGG
GGTAGGACCCCCGCCAACCACCGGTGCGTTTCGTGCTGCACCGTGCAGCA
TACGGCTCGGAGGACGAATGCCCCACTTTTTCTTGAGGCCACCTTCCTCT
TCTTCTTCTTCCTTGCTCTCCACCGTGGACCTTCCGGACCAGATTCGAGG
ACTGCTGCTC
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