mRNA_Ecto-sp8_S_contig104026.652.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104026.652.1
Unique NamemRNA_Ecto-sp8_S_contig104026.652.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104026.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104026contigEcto-sp8_S_contig104026:25..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size192
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143139.7335932-UTR-Ecto-sp8_S_contig104026:24..421681143139.7335932-UTR-Ecto-sp8_S_contig104026:24..42Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig104026 25..42 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143139.7429368-CDS-Ecto-sp8_S_contig104026:42..991681143139.7429368-CDS-Ecto-sp8_S_contig104026:42..99Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104026 43..99 +
1681143139.7521818-CDS-Ecto-sp8_S_contig104026:404..5211681143139.7521818-CDS-Ecto-sp8_S_contig104026:404..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104026 405..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104026.652.1prot_Ecto-sp8_S_contig104026.652.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104026 43..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104026.652.1

>prot_Ecto-sp8_S_contig104026.652.1 ID=prot_Ecto-sp8_S_contig104026.652.1|Name=mRNA_Ecto-sp8_S_contig104026.652.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
MSRNSLSGELPSNIGGACKLKKLNLEKNSIGGALPTSLAECKALEDLNIS
NNQLMGPL
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mRNA from alignment at Ecto-sp8_S_contig104026:25..521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104026.652.1 ID=mRNA_Ecto-sp8_S_contig104026.652.1|Name=mRNA_Ecto-sp8_S_contig104026.652.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=497bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104026:25..521+ (Ectocarpus species8 EcLAC_412)
AATCTCACCTACTTGGACATGAGTAGGAATTCTCTGTCGGGCGAACTTCC
TTCGAACATTGGAGGTGCTTGCAAGGTGCGGTAGAGGCATTGAAACCGGT
GATACAACCGACACTCGATGCTTCAAATAGCATCAGTGCTTTGTTTGTCG
TGATCCACTGCCAAAATTGCGTCACCGTTGTTTGTCCAATGGTTCTTCGC
AAAACGTCTGGTTTTATGGTCGCGAGGCAGGCATGAAAATCGCCGTAGAC
CGCAGAATTACGATATGATGATAGCACGCACAGAGGGGCATTGCCCAGGG
GAGGTGGCCGCTATGAAAACTTTATTACACCAGACATACCTAGTCTCTCA
TCCCCATGGCTCCGTGTGCATACCCGTTAGCTGAAGAAGCTGAACCTAGA
GAAAAACTCGATCGGAGGGGCTCTGCCGACGTCATTGGCAGAATGCAAGG
CTCTTGAGGACTTGAACATCTCCAACAACCAACTGATGGGTCCCCTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104026:25..521+

>mRNA_Ecto-sp8_S_contig104026.652.1 ID=mRNA_Ecto-sp8_S_contig104026.652.1|Name=mRNA_Ecto-sp8_S_contig104026.652.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104026:25..521+ (Ectocarpus species8 EcLAC_412)
ATGAGTAGGAATTCTCTGTCGGGCGAACTTCCTTCGAACATTGGAGGTGC
TTGCAAGCTGAAGAAGCTGAACCTAGAGAAAAACTCGATCGGAGGGGCTC
TGCCGACGTCATTGGCAGAATGCAAGGCTCTTGAGGACTTGAACATCTCC
AACAACCAACTGATGGGTCCCCTT
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