mRNA_Ecto-sp8_S_contig104.644.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104.644.1
Unique NamemRNA_Ecto-sp8_S_contig104.644.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104.644.1 vs. uniprot
Match: A0A6H5JL72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL72_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 2.850e-126
Identity = 237/272 (87.13%), Postives = 242/272 (88.97%), Query Frame = 1 
Query:   40 MTAAGATRERWDTGGLTFMQPSVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPHTAEGRQXXXXXXXXXXXXXXXXXXXXXXXX----TSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNAEASSXXXXAGV-RAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDPNARQEEYGGGAHNYSYPARAAPHHPXXXXXXXXXXXXXXXXXXREFPLXXXXXXXHPGVGPHAAVFQ 840
            MT AG TRERWDTGGLTFMQP+VGTGN E ED+WDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVA QPHTAEGR   XXXXXXXXXXXXXXXXXXXXXX    TSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGN + SS    AGV RAGIPGPWEPVAGPTEGQQYGRAAGHQDD GQRTEYARP AYDPNA+QEEYGG AHNYSYP+RAAPHHP XXXXXXXXXXXX     R FPLXXXXXXXHPGVGPHAA FQ
Sbjct:    1 MTVAGTTRERWDTGGLTFMQPNVGTGNVE-EDVWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGRPQQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNVKTSSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDLGQRTEYARPEAYDPNAQQEEYGGEAHNYSYPSRAAPHHPQXXXXXXXXXXXXFEEGGRGFPLXXXXXXXHPGVGPHAAAFQ 271
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BLAST of mRNA_Ecto-sp8_S_contig104.644.1 vs. uniprot
Match: D8LRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK9_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 8.680e-112
Identity = 228/264 (86.36%), Postives = 230/264 (87.12%), Query Frame = 1 
Query:   94 MQPSVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPHTAEGRQXXXXXXXXXXXXXXXXXXXXXXXX---TSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNAEASSXXXXAGV-RAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDPNARQEEYGGGAHNYSYPARAAPHHPXXXXXXXXXXXXXXXXXXREFPLXXXXXXXHPGVGPHAAVFQVTSPPAVLALH 873
            MQP+VGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVA QPHTAEG+  XXXXXXXXXXXXXXXXXXXXXXX   TSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNAEASS    AGV RAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDPNARQEEYG                 XXXXXXXXXXXXXX    R FPLXXXXXXXHPGVGPHAA FQVTSPPAVLALH
Sbjct:    1 MQPNVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGKPQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDPNARQEEYGXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXEEGGRGFPLXXXXXXXHPGVGPHAAAFQVTSPPAVLALH 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL72_9PHAE2.850e-12687.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRK9_ECTSI8.680e-11286.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104contigEcto-sp8_S_contig104:9344..11961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size900
Hectar predicted targeting categoryother localisation
Exons5
Cds size900
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143138.9353373-CDS-Ecto-sp8_S_contig104:9343..94691681143138.9353373-CDS-Ecto-sp8_S_contig104:9343..9469Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104 9344..9469 +
1681143138.9463327-CDS-Ecto-sp8_S_contig104:9832..98681681143138.9463327-CDS-Ecto-sp8_S_contig104:9832..9868Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104 9833..9868 +
1681143138.9561112-CDS-Ecto-sp8_S_contig104:10371..104251681143138.9561112-CDS-Ecto-sp8_S_contig104:10371..10425Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104 10372..10425 +
1681143138.9659657-CDS-Ecto-sp8_S_contig104:10804..111931681143138.9659657-CDS-Ecto-sp8_S_contig104:10804..11193Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104 10805..11193 +
1681143138.9763303-CDS-Ecto-sp8_S_contig104:11666..119611681143138.9763303-CDS-Ecto-sp8_S_contig104:11666..11961Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104 11667..11961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104.644.1prot_Ecto-sp8_S_contig104.644.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104 9344..11961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104.644.1

>prot_Ecto-sp8_S_contig104.644.1 ID=prot_Ecto-sp8_S_contig104.644.1|Name=mRNA_Ecto-sp8_S_contig104.644.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=300bp
HQAALSVLHTYHAMTAAGATRERWDTGGLTFMQPSVGTGNAEGEDMWDDR
AILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPHTAEGRQQQQQQ
PSTPSSTSRAAAAASGGGGTSPAGAGYQRPRSVPSGHRDQGFQEADRRFA
SLLAKGNAEASSGGGTAGVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDPG
QRTEYARPGAYDPNARQEEYGGGAHNYSYPARAAPHHPQPPPHPPGGAAG
GFEEGGREFPLPPPPPPPHPGVGPHAAVFQVTSPPAVLALHLSTLENTF*
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mRNA from alignment at Ecto-sp8_S_contig104:9344..11961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104.644.1 ID=mRNA_Ecto-sp8_S_contig104.644.1|Name=mRNA_Ecto-sp8_S_contig104.644.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2618bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104:9344..11961+ (Ectocarpus species8 EcLAC_412)
CACCAGGCCGCTCTGTCTGTGCTACATACATACCATGCAATGACAGCTGC
AGGGGCAACGAGGGAGCGCTGGGACACTGGAGGATTGACATTCATGCAGC
CAAGCGTTGGCACCGGCAATGCGGAGGTGAGTTCGGTCCAGCGTATCGTA
GCAGAGGCGTCGAGTCCGTGTTGCGGTTGATCGAACAACTAGTCTAAATA
GCTGTCGCAAGGAAGGAAGGGTGGGTCGCAGGTCGCAGGTCGCATGCAAC
CATGGCAGCATGGCGGCGTCCAGCGCGCAAGGCGCCACAAGCAATGCCCA
TCTCAAGGTCATAGATGGCTGGTTGGTTGCGTGCATGAGTGCATAGCGTG
AGAGGAGCGCTGCTGACTTTGTCCCATTCCTTCCCTTCTTGTCTTTCGAA
ATCGATCGCGCCCTCCTCTCATCTTGACCTGACGACCTCAACGCCTGCCA
ACGTTCCGCATCGTTTTCAAAATTGCTCCGTTTTTTTAGGGGGAAGACAT
GTGGGACGACCGCGCAATTCTGAAGGTAAGACTTGTCCTGCTTTGTGTGT
CGGAGGGGAGATTGATGTCCTCCAGAGTGTTTCAAGCAGCTGGCTGCCGT
CGTGTGTGTGTGTCCTTTATTTTATCCCAACAACGCGTTACTTGTTACTT
GCCTAGACTATTATACCAAATACTCCCCGCATGAGCACCTCGCTACACTA
CAGAGCGTACGATTCCTATTAGCACATGGATAGATGCCGTTGTGGTACTG
CTGTATGCGTTGTATGCATACGACCATCTATGGTAATAATAGCAGTGCAG
CCCCAGCTGCCGGGAGCATACGAGCTTCTATTCACTGCTTTCGCTGTTCC
TATTCACAACAGCAGTCCAAGCACAAACACCAACCCACAGCCGTCAGTCC
CTCACTCCCCCCCCCCCCATCGCCTTGCTCTTTGCTCCTTTCTCTCCCCC
TCCCTTTCGTTCTCGCGTCTCTTGTTGTTCTCTTGCTGCGTATGCGCCTG
CCTGCCCGTGACGTACTGCTCCCTGTAGGCCTTCGATGATGCCTTGAATT
CGCACTCTCGCAAACCTGTGGATGGGGTGGAGGTACGTGCTAGCCAGCCT
GCCGATTTTTGTTTTTTACTGCTGGTGCTACTGACTGCTGCTGGAGCTTT
TCAGGAAAAACAGTTAACGGTTACAACACATCCGGTTCATGCCCCTGACA
GCGGTAGTGTAGTAGTCTACCCACCCGTTCACCCGTTGTAGAACATCCTC
TGGTTCTTTGTTCTTGACCCTGATAGCGCCCACAGGTGATGTCTTAATGA
CGTGTGTCGCAAGGCATTCGGCCGACCGCCGGTGCTTGATCCATCTTACA
GCGGTAGTAAAGCTCATGATCATTGACGAAACCTTGACCGACCTTATCCT
TAACCTTTGCCTTTTCTTGTCGCGCACCCCTATAAATGTAATTACCATCC
CACCACAAAAGGCTCGTAAGTGGAACAAGCACGCCGCGCAGGGGGTAGCC
GCGCAACCCCACACGGCGGAGGGTAGACAGCAGCAGCAGCAGCAGCCGTC
AACGCCGTCCAGCACCTCGCGCGCTGCTGCTGCTGCGAGCGGCGGCGGCG
GCACCTCCCCGGCGGGAGCCGGATACCAACGCCCCCGGTCGGTGCCGAGC
GGGCACCGAGACCAGGGTTTCCAAGAAGCCGACCGGCGTTTTGCGTCCCT
GTTGGCCAAGGGTAACGCCGAGGCCTCTTCCGGAGGGGGCACCGCGGGCG
TACGGGCTGGTATCCCGGGACCCTGGGAGCCCGTGGCTGGTCCGACCGAG
GGGCAGCAGTACGGTCGGGCAGCAGGTCACCAAGATGACCCGGGGCAGCG
GTGAGAACGCAGAATCCGGCTTGTGTGTACAATATGTATGTTGTTCTTTG
GGACGGACTCCCATGTTCTAATGCGACCAGGGAGTTGGACTGCTGTGGCG
GTGTGGCGGTGTACAGTACTATTGTACCGGGTTCGTGCTCACGCGTGGCA
ACCAACCTATTTAAAGTCGTATCCTATTTGGTCGGGACCAGACCAGGCCA
TGTGTCCGATGTCTCTTCTTTTCTAGGCCGGAACGCTGCCACGATGGTCC
GCTCAGATTCCGCACAGATCCCACTGTTTTGTTTAATTTTTCGCGCGCTC
TGCCTGCGAGATATTTTTATTTTCGTGTTGTTGTTGTTGTTGCCGTCCTT
TTAATGATCCCTAAATCCTACCCTCTTGGAACCTTACAGCAGTGCAGTGT
TCGTGGGCACTCCTCGTCTTGAACCCTTTGTTTGGCTCTCAATTCCCCGT
CGTGCGGATGGAATCGAACGCAGGACCGAGTACGCGAGGCCCGGGGCGTA
CGACCCCAACGCGCGGCAGGAAGAATATGGCGGTGGGGCACATAACTACT
CCTATCCCGCACGAGCGGCGCCTCATCATCCACAACCGCCTCCTCACCCC
CCGGGGGGCGCGGCAGGTGGCTTTGAAGAGGGGGGGCGTGAATTTCCCCT
GCCACCGCCGCCGCCGCCGCCACATCCTGGAGTCGGTCCTCACGCGGCAG
TCTTTCAGGTGACCTCGCCACCGGCGGTTCTTGCTCTTCATTTAAGTACA
TTGGAAAATACTTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104:9344..11961+

>mRNA_Ecto-sp8_S_contig104.644.1 ID=mRNA_Ecto-sp8_S_contig104.644.1|Name=mRNA_Ecto-sp8_S_contig104.644.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104:9344..11961+ (Ectocarpus species8 EcLAC_412)
CACCAGGCCGCTCTGTCTGTGCTACATACATACCATGCAATGACAGCTGC
AGGGGCAACGAGGGAGCGCTGGGACACTGGAGGATTGACATTCATGCAGC
CAAGCGTTGGCACCGGCAATGCGGAGGGGGAAGACATGTGGGACGACCGC
GCAATTCTGAAGGCCTTCGATGATGCCTTGAATTCGCACTCTCGCAAACC
TGTGGATGGGGTGGAGGCTCGTAAGTGGAACAAGCACGCCGCGCAGGGGG
TAGCCGCGCAACCCCACACGGCGGAGGGTAGACAGCAGCAGCAGCAGCAG
CCGTCAACGCCGTCCAGCACCTCGCGCGCTGCTGCTGCTGCGAGCGGCGG
CGGCGGCACCTCCCCGGCGGGAGCCGGATACCAACGCCCCCGGTCGGTGC
CGAGCGGGCACCGAGACCAGGGTTTCCAAGAAGCCGACCGGCGTTTTGCG
TCCCTGTTGGCCAAGGGTAACGCCGAGGCCTCTTCCGGAGGGGGCACCGC
GGGCGTACGGGCTGGTATCCCGGGACCCTGGGAGCCCGTGGCTGGTCCGA
CCGAGGGGCAGCAGTACGGTCGGGCAGCAGGTCACCAAGATGACCCGGGG
CAGCGGACCGAGTACGCGAGGCCCGGGGCGTACGACCCCAACGCGCGGCA
GGAAGAATATGGCGGTGGGGCACATAACTACTCCTATCCCGCACGAGCGG
CGCCTCATCATCCACAACCGCCTCCTCACCCCCCGGGGGGCGCGGCAGGT
GGCTTTGAAGAGGGGGGGCGTGAATTTCCCCTGCCACCGCCGCCGCCGCC
GCCACATCCTGGAGTCGGTCCTCACGCGGCAGTCTTTCAGGTGACCTCGC
CACCGGCGGTTCTTGCTCTTCATTTAAGTACATTGGAAAATACTTTTTAG
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