mRNA_Ecto-sp8_S_contig10396.640.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10396.640.1
Unique NamemRNA_Ecto-sp8_S_contig10396.640.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10396.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10396contigEcto-sp8_S_contig10396:1699..3620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size435
Hectar predicted targeting categorysignal peptide
Exons3
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143138.6110368-CDS-Ecto-sp8_S_contig10396:1698..18061681143138.6110368-CDS-Ecto-sp8_S_contig10396:1698..1806Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10396 1699..1806 +
1681143138.621697-CDS-Ecto-sp8_S_contig10396:2046..23231681143138.621697-CDS-Ecto-sp8_S_contig10396:2046..2323Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10396 2047..2323 +
1681143138.6316352-CDS-Ecto-sp8_S_contig10396:3572..36191681143138.6316352-CDS-Ecto-sp8_S_contig10396:3572..3619Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10396 3573..3619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10396.640.1prot_Ecto-sp8_S_contig10396.640.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10396 1699..3619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10396.640.1

>prot_Ecto-sp8_S_contig10396.640.1 ID=prot_Ecto-sp8_S_contig10396.640.1|Name=mRNA_Ecto-sp8_S_contig10396.640.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
PGGSGLNAHIITPSLFLTTGLCAGSVGAMLQSFATQDCERSFYVNLRISI
AETAGPVSSASVVVSIGVLPLLLVSAASASTTYFFGSVAISALLAALLSL
LHALLLAPTLLLACEECMAPTPTPPFSPAATIEAETLPWLPRSR
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mRNA from alignment at Ecto-sp8_S_contig10396:1699..3620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10396.640.1 ID=mRNA_Ecto-sp8_S_contig10396.640.1|Name=mRNA_Ecto-sp8_S_contig10396.640.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1922bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10396:1699..3620+ (Ectocarpus species8 EcLAC_412)
CCAGGCGGCTCCGGACTCAACGCACACATCATCACCCCTTCGCTCTTTCT
TACCACCGGCCTTTGTGCTGGCTCCGTCGGGGCAATGCTACAGTCCTTTG
CGACGCAGGTACGAATATAGGAGCTCTTGCGACTATACATCTCGGACTTT
CCAGAACACGGAAACACCCGGGTGAACATCGTGGCATATTCTCCGTGTCT
GGATAGTACCAAGCTACACCCGCCCTTTGCTTAGTAGATGTGTGCGTATT
GGAGGACGCGTCGCATGTCAGGATCCCAACGTACCTGCCCCTATGCCTTT
TTGGTCGTTTTTTTGTTTTTAAATTTTCCCGTCAACCCCAACAATCAGGA
TTGCGAGCGCTCGTTCTACGTGAATCTTCGCATCTCTATCGCGGAGACCG
CTGGACCCGTCAGCTCCGCTTCGGTCGTCGTTTCCATCGGTGTTCTCCCC
CTCTTACTTGTTTCCGCTGCTTCGGCATCGACTACGTACTTCTTTGGATC
GGTGGCCATTTCCGCGCTTCTTGCGGCGTTGCTTTCTCTGTTGCACGCAC
TGTTGCTCGCACCAACACTGCTACTCGCGTGTGAAGAGTGCATGGCCCCA
ACGCCTACTCCACCCTTCTCGCCAGGTTAGTGGTGGAGCCAAAGCTGTGC
AGGCTGTGTTGCCTTCGAAGTTGCAAGGCCTGGGTTGGCCCCTCTCATTG
TTCTTTTACGACGTATCTTTGGGAATTATTTTCTTTGGGAATTATTTTCG
TCGCACAGCGTACTGTAGACTGAATGTTTTCGCTGGATGGTGATGCGATA
CCCTCAAACTCTACCAAACATTGGGGCCTTTGAAATACCTGAGTACCAGT
CAAAGGTGATTCGTTTGCGCCCCCGAAAAATGGTGAATATGCGTATCTAT
GCACGTCCTCGTCAGTATGTGGACGCCAGTGTGTTTAACCTTCTCCTGGC
ACGATGTAGGCCACTTCGCACCACTGTTATCCATCTCTGCCACAGATAAG
AATCCGCGGTACATTAGAAATGAATACATTGTGTCGTATGGTGACCACCC
TATGTTTCCATGGGTCCCCGAGCGGCACAGAACGACACCCCCCCGGTGGG
TTACAGTGTCGACAAGACAGTTAGGTGGCCATCTTGTGTATCTGACTGTA
TGTTCTGCTGGGGCAGTGAAGAGGAGTATATATTGGGGAGATGTTCGGCG
GCGGGTATCTATTTGTGGTACCCACTAGTGCGTTGTTTGGGCGATTGAAA
GGCGCTTTGGTTCAACATGAATTATTTGCAGGTTCTATCAATTCAGCGTT
CGTTCGACCAACATAACTACTTGTAGTGTTGTTTTAGAGCATGTTCCCGA
TGCACCAGGAGGAACAATCCAGTTTCTTCCACGTGCCACTTTTCACTTTT
CGAGTGTTTAGACGATAAAACAGGAAAACGATCACCCCTTTATTTAGTCT
TGTGACTACCTTGAAACAAATGAGTATCAAACAAGCCAGTCGCGTTTCTG
TTTTCGTTGGTTCCCTCAAACCAGTCCAGCTGCTAGGGAAAGTAAGACTT
CAGGAGTTCGTGCCCAACACGATCCAATAATTGCTCTTGGCCCTCTTTGG
TTGTTGCGTATCCTGGGCCGCATTTTCTGCCTCTAAAGGCTCTTCGGTTC
GGAAGGTTGTGTGACACTCATCGCGTTATTCGACGACCGCCGGGGGAGAA
CAGAACCGAGACTGTTTTCTGACGACGCTCCAAAACAGAACTTTTTTTGT
GTGGGGGGCGAGAACAACGCAGAAAATCGGCAGTGGAGCTACACGCACTA
ATGTTTACTAAGTTTCTAGCGCGGTGAAACTGGTCGCTCCTCGCATCCCT
CTCTCCTGTCGTCATTACAAACAGCAGCAACGATTGAAGCAGAAACTCTG
CCATGGCTACCACGCAGTCGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10396:1699..3620+

>mRNA_Ecto-sp8_S_contig10396.640.1 ID=mRNA_Ecto-sp8_S_contig10396.640.1|Name=mRNA_Ecto-sp8_S_contig10396.640.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10396:1699..3620+ (Ectocarpus species8 EcLAC_412)
CCAGGCGGCTCCGGACTCAACGCACACATCATCACCCCTTCGCTCTTTCT
TACCACCGGCCTTTGTGCTGGCTCCGTCGGGGCAATGCTACAGTCCTTTG
CGACGCAGGATTGCGAGCGCTCGTTCTACGTGAATCTTCGCATCTCTATC
GCGGAGACCGCTGGACCCGTCAGCTCCGCTTCGGTCGTCGTTTCCATCGG
TGTTCTCCCCCTCTTACTTGTTTCCGCTGCTTCGGCATCGACTACGTACT
TCTTTGGATCGGTGGCCATTTCCGCGCTTCTTGCGGCGTTGCTTTCTCTG
TTGCACGCACTGTTGCTCGCACCAACACTGCTACTCGCGTGTGAAGAGTG
CATGGCCCCAACGCCTACTCCACCCTTCTCGCCAGCAGCAACGATTGAAG
CAGAAACTCTGCCATGGCTACCACGCAGTCGC
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