mRNA_Ecto-sp8_S_contig103928.638.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103928.638.1
Unique NamemRNA_Ecto-sp8_S_contig103928.638.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A653JH71_9SPHN (Methyltransferase n=18 Tax=Sphingomonadales TaxID=204457 RepID=A0A653JH71_9SPHN)

HSP 1 Score: 318 bits (815), Expect = 1.620e-106
Identity = 155/172 (90.12%), Postives = 158/172 (91.86%), Query Frame = 1
Query:    1 MGIIERIHAPKTGIAKKAEV----KADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEKS 504
            MGIIERI APKT  A  A      KA +LPLGQILKMDC+ AMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWD FDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDI+WRKANPMPNFKGTRFTNAHETLIWASKSEKS
Sbjct:    1 MGIIERIQAPKTRTAPSAGTRTTKKAAELPLGQILKMDCITAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDQFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIIWRKANPMPNFKGTRFTNAHETLIWASKSEKS 172          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A3B0SQH5_9ZZZZ (Type II restriction adenine-specific methylase (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0SQH5_9ZZZZ)

HSP 1 Score: 301 bits (772), Expect = 5.960e-102
Identity = 151/184 (82.07%), Postives = 154/184 (83.70%), Query Frame = 1
Query:    1 MGIIERIHAPK--------TGIA---------KKAEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEK 501
            MGIIERI APK        TG A         +K    A KLPL QILKMDCV AMASLPD SVDMIFADPPYNLQLGGDLYRPEGGQVDAVDD WDHFDSFAAYDAFT AWL EARRILKP+GSLWVIGSYHNIFRVGASLQDLGYWILNDI+WRKANPMPNFKGTRFTNAHETLIWASKSEK
Sbjct:    1 MGIIERIDAPKNRNAPRTKTGRAQKNGSQKGKRKPAQNAAKLPLNQILKMDCVEAMASLPDESVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDEWDHFDSFAAYDAFTNAWLTEARRILKPNGSLWVIGSYHNIFRVGASLQDLGYWILNDIIWRKANPMPNFKGTRFTNAHETLIWASKSEK 184          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A6H2DK46_9SPHN (Methyltransferase n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A6H2DK46_9SPHN)

HSP 1 Score: 304 bits (779), Expect = 6.170e-101
Identity = 149/181 (82.32%), Postives = 157/181 (86.74%), Query Frame = 1
Query:    1 MGIIERIHAP--------------KTGIAKKAEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEK 501
            MGIIERI AP              KTG AK AE  A KLPL  ILKMDC+ AMASLPDAS+DM+FADPPYNLQLGGDLYRPEGGQVDAVDDAWD FDSFAAYDAFTKAWL+EARRILKP+GSLWVIGSYHNIFRVGASLQD+GYWILNDI+WRKANPMPNFKGTRFTNAHETLIWA+KSEK
Sbjct:    1 MGIIERIDAPTNKVAPHKKTGRTIKTGTAKPAENTA-KLPLNSILKMDCIEAMASLPDASIDMVFADPPYNLQLGGDLYRPEGGQVDAVDDAWDQFDSFAAYDAFTKAWLSEARRILKPNGSLWVIGSYHNIFRVGASLQDIGYWILNDIIWRKANPMPNFKGTRFTNAHETLIWAAKSEK 180          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A371BHC3_9SPHN (Methyltransferase n=2 Tax=Sphingorhabdus pulchriflava TaxID=2292257 RepID=A0A371BHC3_9SPHN)

HSP 1 Score: 273 bits (699), Expect = 5.550e-89
Identity = 126/167 (75.45%), Postives = 142/167 (85.03%), Query Frame = 1
Query:    1 MGIIERIHAPKTGIAKKAEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEK 501
            MG++E+I        K A+V    LPL  ILKMDC+ AM SLPDA VDM+FADPPYNLQLGGDL RP+G QVDAVDD WD FD+FAAYD FT+ WLAEARRILKPDG+LWVIGSYHNIFRVGA+LQD G+WILNDI+WRK+NPMPNFKGTRFTNAHETLIWA+KS+K
Sbjct:    1 MGVMEKIAVKPKTATKVAKVDKKTLPLDSILKMDCIEAMRSLPDACVDMVFADPPYNLQLGGDLQRPDGSQVDAVDDDWDKFDNFAAYDKFTQEWLAEARRILKPDGTLWVIGSYHNIFRVGATLQDQGFWILNDIIWRKSNPMPNFKGTRFTNAHETLIWAAKSDK 167          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A7T2GJR0_9SPHN (Methyltransferase n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A7T2GJR0_9SPHN)

HSP 1 Score: 272 bits (696), Expect = 1.440e-88
Identity = 126/168 (75.00%), Postives = 145/168 (86.31%), Query Frame = 1
Query:    1 MGIIERIHAPKTGIAKKAEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEKS 504
            M +++R+  PK G+  K E     LPL  I++ DC+AAMASLPDA VDMIFADPPYNLQLGG+L+RPEGG+VDA DD WD FD+FAAYD FTKAW+ EARRILKP+G+LWVIGSYHNIFR GA+LQDLG+WILNDIVWRK+NPMPNF+GTRFTNAHETLIWASKSE S
Sbjct:    1 MSVLQRVAVPKKGMKAKVEPLRG-LPLNSIIEDDCIAAMASLPDACVDMIFADPPYNLQLGGELFRPEGGRVDACDDDWDKFDTFAAYDEFTKAWMKEARRILKPNGTLWVIGSYHNIFRCGATLQDLGFWILNDIVWRKSNPMPNFRGTRFTNAHETLIWASKSEDS 167          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A653ZRP2_9SPHN (Methyltransferase n=2 Tax=Sphingomonas sp. AX6 TaxID=2653171 RepID=A0A653ZRP2_9SPHN)

HSP 1 Score: 271 bits (693), Expect = 3.970e-88
Identity = 129/167 (77.25%), Postives = 141/167 (84.43%), Query Frame = 1
Query:    1 MGIIERIHAPKTGIAKKAEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEK 501
            M +IE+    +   AKKAEV A  LPL QIL  DCVAAM +LP AS+DMIFADPPYNLQLGGDL RP+G QVDAVDD WD FDSFA YD FT+AWL EARRILKP+GSLWVIGSYHNIFRVG ++QDLG+WILND+VWRKANPMPNFKGTRFTNAHETLIWAS  EK
Sbjct:    1 MAVIEKTRIAR---AKKAEVPAPALPLDQILMGDCVAAMKALPTASIDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDKFDSFAVYDRFTRAWLKEARRILKPNGSLWVIGSYHNIFRVGTAVQDLGFWILNDVVWRKANPMPNFKGTRFTNAHETLIWASMGEK 164          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A5C6U9Z8_9SPHN (Methyltransferase n=2 Tax=Sphingorhabdus soli TaxID=2601267 RepID=A0A5C6U9Z8_9SPHN)

HSP 1 Score: 271 bits (692), Expect = 5.800e-88
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1
Query:    1 MGIIERIHAPKTGIAKKAEVKADK-LPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEKS 504
            MG+IE++    T + K A   A K LPLGQI++ DC+A MA+LPD SVDMIFADPPYNLQLGGDLYRPEGG+VDAVDD WD FD+ A YD FT+AWLAEARRILKP+GS+WVIGSYHNIFRVG ++QD G+WILNDIVWRK+NPMPNFKGTRFTNAHETLIWASKSE S
Sbjct:    1 MGVIEKLP---TRVRKAAPAPAAKNLPLGQIIQGDCIAVMAALPDDSVDMIFADPPYNLQLGGDLYRPEGGRVDAVDDDWDKFDTLAIYDKFTRAWLAEARRILKPNGSIWVIGSYHNIFRVGTAIQDQGFWILNDIVWRKSNPMPNFKGTRFTNAHETLIWASKSEGS 166          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A418WLC6_9SPHN (Methyltransferase n=3 Tax=Sphingomonas TaxID=13687 RepID=A0A418WLC6_9SPHN)

HSP 1 Score: 270 bits (691), Expect = 7.740e-88
Identity = 128/167 (76.65%), Postives = 142/167 (85.03%), Query Frame = 1
Query:    1 MGIIERIHAPKTGIAKKAEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEK 501
            MG++ER+   K  +A        +LPL +IL  DCVAAMASLPD S+DMIFADPPYNLQLGGDL RP+G QVDAVDD WD FDSFAAYD FTKAWL EARRILK +G++WVIGSYHNIFRVGA++QD GYWILNDIVWRK+NPMPNFKGTRFTNAHETLIWASKSEK
Sbjct:    1 MGVMERVSTRKKAVADSGV----RLPLDRILMDDCVAAMASLPDKSIDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDKFDSFAAYDKFTKAWLKEARRILKDNGTIWVIGSYHNIFRVGAAIQDEGYWILNDIVWRKSNPMPNFKGTRFTNAHETLIWASKSEK 163          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A1E4JHP6_9SPHN (Methyltransferase n=1 Tax=Sphingomonas sp. SCN 67-18 TaxID=1660141 RepID=A0A1E4JHP6_9SPHN)

HSP 1 Score: 270 bits (691), Expect = 7.740e-88
Identity = 129/166 (77.71%), Postives = 147/166 (88.55%), Query Frame = 1
Query:    1 MGIIERIHAPKTGIAKKAEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSE 498
            MG+++++   K G A  A+  A  LPL QIL  DC+AAM +LPDAS+DMIFADPPYNLQLGGDLYRPEGG+VDAVD+ WD FD+FAAYDAFT+AWLAEARRILK DG+LWVIGSYHNIFRVGA++QD GYWILNDIVWRKANPMPNFKGTRFTNAHETLIWA++SE
Sbjct:    1 MGVMQKVA--KRGKASAAQ--ALSLPLDQILMDDCIAAMKALPDASIDMIFADPPYNLQLGGDLYRPEGGRVDAVDNDWDKFDTFAAYDAFTRAWLAEARRILKDDGTLWVIGSYHNIFRVGAAVQDEGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWAARSE 162          
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Match: A0A147ECD1_9SPHN (Methyltransferase n=4 Tax=Novosphingobium TaxID=165696 RepID=A0A147ECD1_9SPHN)

HSP 1 Score: 270 bits (689), Expect = 1.650e-87
Identity = 127/150 (84.67%), Postives = 133/150 (88.67%), Query Frame = 1
Query:   52 AEVKADKLPLGQILKMDCVAAMASLPDASVDMIFADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASKSEK 501
            A V  + LPLGQIL  DC+AAM SLPDAS+DMIFADPPYNLQLGGDL RP+G  VDAV D WD FDSFA YDAFT+AWLAEARRILKPDGSLWVIGSYHNIFRVGASLQD G+WILNDIVWRKANPMPNFKGTRFTNAHETLIWAS  EK
Sbjct:   16 APVPKELLPLGQILDGDCIAAMRSLPDASIDMIFADPPYNLQLGGDLSRPDGSHVDAVTDHWDKFDSFATYDAFTRAWLAEARRILKPDGSLWVIGSYHNIFRVGASLQDAGFWILNDIVWRKANPMPNFKGTRFTNAHETLIWASMGEK 165          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103928.638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A653JH71_9SPHN1.620e-10690.12Methyltransferase n=18 Tax=Sphingomonadales TaxID=... [more]
A0A3B0SQH5_9ZZZZ5.960e-10282.07Type II restriction adenine-specific methylase (Fr... [more]
A0A6H2DK46_9SPHN6.170e-10182.32Methyltransferase n=3 Tax=Sphingomonadales TaxID=2... [more]
A0A371BHC3_9SPHN5.550e-8975.45Methyltransferase n=2 Tax=Sphingorhabdus pulchrifl... [more]
A0A7T2GJR0_9SPHN1.440e-8875.00Methyltransferase n=3 Tax=Sphingomonadales TaxID=2... [more]
A0A653ZRP2_9SPHN3.970e-8877.25Methyltransferase n=2 Tax=Sphingomonas sp. AX6 Tax... [more]
A0A5C6U9Z8_9SPHN5.800e-8876.33Methyltransferase n=2 Tax=Sphingorhabdus soli TaxI... [more]
A0A418WLC6_9SPHN7.740e-8876.65Methyltransferase n=3 Tax=Sphingomonas TaxID=13687... [more]
A0A1E4JHP6_9SPHN7.740e-8877.71Methyltransferase n=1 Tax=Sphingomonas sp. SCN 67-... [more]
A0A147ECD1_9SPHN1.650e-8784.67Methyltransferase n=4 Tax=Novosphingobium TaxID=16... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103928contigEcto-sp8_S_contig103928:18..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score268.9
Seed ortholog evalue1.6e-69
Seed eggNOG ortholog1123269.NX02_16275
Preferred nameccrM
Model size504
KEGG koko:K00571,ko:K13581
KEGG Pathwayko04112,map04112
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the N(4) N(6)-methyltransferase family
EggNOG OGs1MX9M@1224,2K0RE@204457,2TSW9@28211,COG2189@1,COG2189@2
EC2.1.1.72
Cds size504
COG Functional cat.L
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02048
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143138.5450978-CDS-Ecto-sp8_S_contig103928:17..5211681143138.5450978-CDS-Ecto-sp8_S_contig103928:17..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103928 18..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103928.638.1prot_Ecto-sp8_S_contig103928.638.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103928 18..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103928.638.1

>prot_Ecto-sp8_S_contig103928.638.1 ID=prot_Ecto-sp8_S_contig103928.638.1|Name=mRNA_Ecto-sp8_S_contig103928.638.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=168bp
MGIIERIHAPKTGIAKKAEVKADKLPLGQILKMDCVAAMASLPDASVDMI
FADPPYNLQLGGDLYRPEGGQVDAVDDAWDHFDSFAAYDAFTKAWLAEAR
RILKPDGSLWVIGSYHNIFRVGASLQDLGYWILNDIVWRKANPMPNFKGT
RFTNAHETLIWASKSEKS
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mRNA from alignment at Ecto-sp8_S_contig103928:18..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103928.638.1 ID=mRNA_Ecto-sp8_S_contig103928.638.1|Name=mRNA_Ecto-sp8_S_contig103928.638.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103928:18..521+ (Ectocarpus species8 EcLAC_412)
ATGGGGATTATCGAGCGTATTCACGCACCCAAAACAGGCATTGCAAAAAA GGCCGAAGTTAAGGCTGACAAACTGCCGTTGGGGCAAATATTGAAGATGG ATTGTGTCGCGGCCATGGCTTCGTTGCCTGATGCGTCGGTGGATATGATC TTTGCCGATCCGCCCTATAATCTGCAGCTTGGCGGTGATCTCTATCGTCC GGAAGGCGGGCAGGTTGACGCTGTCGACGACGCATGGGACCATTTTGACA GCTTTGCTGCCTATGATGCCTTCACCAAGGCATGGCTGGCAGAGGCGCGT CGGATCCTGAAACCCGATGGCTCTCTTTGGGTGATCGGCAGCTATCATAA TATCTTCCGGGTTGGTGCTTCGCTGCAGGATCTCGGCTACTGGATCCTCA ACGATATTGTCTGGCGCAAAGCCAACCCGATGCCCAATTTCAAGGGAACC CGCTTTACCAACGCGCATGAAACGCTGATCTGGGCTTCGAAATCGGAAAA ATCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103928:18..521+

>mRNA_Ecto-sp8_S_contig103928.638.1 ID=mRNA_Ecto-sp8_S_contig103928.638.1|Name=mRNA_Ecto-sp8_S_contig103928.638.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103928:18..521+ (Ectocarpus species8 EcLAC_412)
ATGGGGATTATCGAGCGTATTCACGCACCCAAAACAGGCATTGCAAAAAA
GGCCGAAGTTAAGGCTGACAAACTGCCGTTGGGGCAAATATTGAAGATGG
ATTGTGTCGCGGCCATGGCTTCGTTGCCTGATGCGTCGGTGGATATGATC
TTTGCCGATCCGCCCTATAATCTGCAGCTTGGCGGTGATCTCTATCGTCC
GGAAGGCGGGCAGGTTGACGCTGTCGACGACGCATGGGACCATTTTGACA
GCTTTGCTGCCTATGATGCCTTCACCAAGGCATGGCTGGCAGAGGCGCGT
CGGATCCTGAAACCCGATGGCTCTCTTTGGGTGATCGGCAGCTATCATAA
TATCTTCCGGGTTGGTGCTTCGCTGCAGGATCTCGGCTACTGGATCCTCA
ACGATATTGTCTGGCGCAAAGCCAACCCGATGCCCAATTTCAAGGGAACC
CGCTTTACCAACGCGCATGAAACGCTGATCTGGGCTTCGAAATCGGAAAA
ATCG
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