mRNA_Ecto-sp8_S_contig103899.633.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103899.633.1
Unique NamemRNA_Ecto-sp8_S_contig103899.633.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103899.633.1 vs. uniprot
Match: D7G4P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 7.660e-9
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   22 HCTPLSPPSGYSRTQQCWCGDGETAYDANGASEECVMP 135
            HC+   P  G   + +CWCGDGETAYD NGASEECVMP
Sbjct:  104 HCSAY-PYYGTQYSTECWCGDGETAYDTNGASEECVMP 140
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BLAST of mRNA_Ecto-sp8_S_contig103899.633.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 3.220e-5
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 1 
Query:   22 HCTPLSPPSGYSRTQQCWCGDGETAYDANGASEECVMP 135
            HC+   P  G   + +CWCGD    YDANGAS ECVMP
Sbjct:   44 HCSAY-PYYGTQYSVECWCGDENADYDANGASNECVMP 80
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BLAST of mRNA_Ecto-sp8_S_contig103899.633.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 7.000e-5
Identity = 18/25 (72.00%), Postives = 19/25 (76.00%), Query Frame = 1 
Query:   61 TQQCWCGDGETAYDANGASEECVMP 135
            T+ CWCGD    YDANGAS ECVMP
Sbjct:   37 TKACWCGDENADYDANGASNECVMP 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103899.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4P0_ECTSI7.660e-965.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL84_9PHAE3.220e-555.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS7_9PHAE7.000e-572.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103899contigEcto-sp8_S_contig103899:388..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143138.1616886-CDS-Ecto-sp8_S_contig103899:387..5221681143138.1616886-CDS-Ecto-sp8_S_contig103899:387..522Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103899 388..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103899.633.1prot_Ecto-sp8_S_contig103899.633.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103899 388..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103899.633.1

>prot_Ecto-sp8_S_contig103899.633.1 ID=prot_Ecto-sp8_S_contig103899.633.1|Name=mRNA_Ecto-sp8_S_contig103899.633.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=45bp
MNPRRLTHCTPLSPPSGYSRTQQCWCGDGETAYDANGASEECVMP
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mRNA from alignment at Ecto-sp8_S_contig103899:388..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103899.633.1 ID=mRNA_Ecto-sp8_S_contig103899.633.1|Name=mRNA_Ecto-sp8_S_contig103899.633.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103899:388..522+ (Ectocarpus species8 EcLAC_412)
ATGAACCCTCGCCGTCTCACTCACTGCACTCCCCTCTCTCCCCCTTCGGG
GTACTCTCGAACGCAACAGTGCTGGTGCGGCGACGGCGAGACCGCCTATG
ATGCGAACGGTGCCAGCGAGGAGTGCGTGATGCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103899:388..522+

>mRNA_Ecto-sp8_S_contig103899.633.1 ID=mRNA_Ecto-sp8_S_contig103899.633.1|Name=mRNA_Ecto-sp8_S_contig103899.633.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103899:388..522+ (Ectocarpus species8 EcLAC_412)
ATGAACCCTCGCCGTCTCACTCACTGCACTCCCCTCTCTCCCCCTTCGGG
GTACTCTCGAACGCAACAGTGCTGGTGCGGCGACGGCGAGACCGCCTATG
ATGCGAACGGTGCCAGCGAGGAGTGCGTGATGCCC
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