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Homology
BLAST of mRNA_Ecto-sp8_S_contig10383.625.1 vs. uniprot
Match: D7G995_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G995_ECTSI) HSP 1 Score: 664 bits (1712), Expect = 6.900e-231 Identity = 342/382 (89.53%), Postives = 349/382 (91.36%), Query Frame = 3
Query: 246 MEQFKISTVSKQFPNQLAQGKEGKVILAGQGDDWFLENLFTTEGGDNRAIIAPRLGMLQALAGLAPVFKSGCSDLSGEVRLSLEDERFPWRFDNEDCSGFTITAREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVPGNARWVLQKVKPVNDALEQVKISLFTKEFALPRERFVAQADRSVVLTAEGDKWFLRSSSKEDDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKTKSESSPAPKTGDHGGQHVPSCDDMVDQRGELGLSVATNGKDFPWTFEERAEGGVTVTATAPPEPAFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVDRGXXXXXXXXXSACGVVKHVPAAAGSSTTIADTSSGLGP 1391
MEQFKIST+SKQFPNQLAQGKEGKVILAGQGDDWFLENLF+TEGGDNRAIIAPRLGMLQALA LAPVFK GCSDLSGEVRLSL+DERFPWRFDNED SGFTI AREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVPGNARWVLQKV+PVNDALEQVKISLFTK FALPRERFVAQADRSVVL AEGDKWFLRSSSK DDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKT++ESSP PK G HG QH PSCDDMVDQ GELGLSVATNG DFPWTFEERAEGGVT+TATAPPE AFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVD XXXXXXXXX TTIADTSSGLGP
Sbjct: 1 MEQFKISTLSKQFPNQLAQGKEGKVILAGQGDDWFLENLFSTEGGDNRAIIAPRLGMLQALASLAPVFKPGCSDLSGEVRLSLDDERFPWRFDNEDSSGFTIAAREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVPGNARWVLQKVQPVNDALEQVKISLFTKAFALPRERFVAQADRSVVLAAEGDKWFLRSSSKGDDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKTRNESSPTPKAGGHGEQHAPSCDDMVDQSGELGLSVATNGNDFPWTFEERAEGGVTITATAPPELAFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVDGXXXXXXXXXXXXXXXXXXXXXXXXXXTTIADTSSGLGP 382
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2749 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 1320 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143137.6370206-UTR-Ecto-sp8_S_contig10383:360..434 | 1681143137.6370206-UTR-Ecto-sp8_S_contig10383:360..434 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig10383 361..434 + |
| 1681143137.7252128-UTR-Ecto-sp8_S_contig10383:4455..5810 | 1681143137.7252128-UTR-Ecto-sp8_S_contig10383:4455..5810 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig10383 4456..5810 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143137.6507177-CDS-Ecto-sp8_S_contig10383:434..582 | 1681143137.6507177-CDS-Ecto-sp8_S_contig10383:434..582 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10383 435..582 + |
| 1681143137.659528-CDS-Ecto-sp8_S_contig10383:1141..1236 | 1681143137.659528-CDS-Ecto-sp8_S_contig10383:1141..1236 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10383 1142..1236 + |
| 1681143137.66886-CDS-Ecto-sp8_S_contig10383:1418..1507 | 1681143137.66886-CDS-Ecto-sp8_S_contig10383:1418..1507 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10383 1419..1507 + |
| 1681143137.681715-CDS-Ecto-sp8_S_contig10383:2175..2236 | 1681143137.681715-CDS-Ecto-sp8_S_contig10383:2175..2236 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10383 2176..2236 + |
| 1681143137.6926658-CDS-Ecto-sp8_S_contig10383:2573..2807 | 1681143137.6926658-CDS-Ecto-sp8_S_contig10383:2573..2807 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10383 2574..2807 + |
| 1681143137.7046425-CDS-Ecto-sp8_S_contig10383:3560..3700 | 1681143137.7046425-CDS-Ecto-sp8_S_contig10383:3560..3700 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10383 3561..3700 + |
| 1681143137.7162638-CDS-Ecto-sp8_S_contig10383:3902..4455 | 1681143137.7162638-CDS-Ecto-sp8_S_contig10383:3902..4455 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10383 3903..4455 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10383.625.1 >prot_Ecto-sp8_S_contig10383.625.1 ID=prot_Ecto-sp8_S_contig10383.625.1|Name=mRNA_Ecto-sp8_S_contig10383.625.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=440bp
MCAERKGGGELVLQKSAVNPSRPSQIPPTQPHSHPAQLCFRTIQIAASTG RPRIIRDMEQFKISTVSKQFPNQLAQGKEGKVILAGQGDDWFLENLFTTE GGDNRAIIAPRLGMLQALAGLAPVFKSGCSDLSGEVRLSLEDERFPWRFD NEDCSGFTITAREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVP GNARWVLQKVKPVNDALEQVKISLFTKEFALPRERFVAQADRSVVLTAEG DKWFLRSSSKEDDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKTKSESSP APKTGDHGGQHVPSCDDMVDQRGELGLSVATNGKDFPWTFEERAEGGVTV TATAPPEPAFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVD RGGGGGGGGKESACGVVKHVPAAAGSSTTIADTSSGLGP* back to topmRNA from alignment at Ecto-sp8_S_contig10383:361..5810+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig10383.625.1 ID=mRNA_Ecto-sp8_S_contig10383.625.1|Name=mRNA_Ecto-sp8_S_contig10383.625.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5450bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10383:361..5810+ (Ectocarpus species8 EcLAC_412) GTACGACAGGAGCATGGCACCGTTCTTCACACCAAGGATGTCCGGCGGGC
CACGCGCCACGACCTCACAGCAGTATGTGCGCAGAAAGGAAGGGAGGCGG
GGAATTAGTTCTGCAAAAGTCCGCAGTAAACCCGTCCCGCCCAAGCCAGA
TCCCCCCAACCCAACCTCATTCACACCCTGCACAGCTCTGCTTCAGAACT
ATCCAGATAGCAGCAAGTACAGGTGAGCCACGAAGGGAACGGCTACAGGA
CCAGTGCACACGCAACGTATGTGCGCGCACCCAACGCCCTCCTCGGGTTT
GTTCTTAATTTTGTTTTGGTGCGATGAACGGCAACACACCGCAGCCCTCG
CCGTAGAAAATTGAGAGGTTGTTTTTAGCACCTGGAACATCGGTATTGGA
GGTGGCCACACGGATATCCTGAGAAGTTTGCGTACCGATGAATGTAAGTT
GTGTCCGTCCCCCACTGTCCATGTCGTCAATCATCGATTTGTCCACAGGG
AGCATAGGGACCGCAAGGAAGCAAGGGTACGCAGCACATTCAAAGCACAT
TCAAAGCACGTCCCTCCATAGTCTAGATTTGATTCCTCCGCAAGAAGAGC
GCACGCCTAGATAGAACGAACGGTACTGAAGAACCCCGCGCATGCCAATC
ATTCTTCCGGTTTGCATTCCGTTCTTGGTCCCTGGCGCCCCGAAAGCACC
ACATCTATCTCCCATCTTTGCAGATGGATACTTCACACACAGTGTACATG
ACTTGCCAACCCGAACACGTAACTTTTTCAGGACGCCCAAGAATTATTCG
CGACATGGAGCAGTTCAAGATATCCACGGTTTCTAAGCAATTCCCCAACC
AGCTAGCCCAGGGCAAGGAAGGGAAGGTAAGGTCGTCCTCGGCCGATCAG
AGCACCCACGTACGATTGAATCGTGTGTGGATATCGCACCATGTTTTATC
CTGATGTATGTGTAATCGCGCATGCCATTGACTGAGTGTGTCAACCTCTG
AACGAACGATTTCTCGCACTTGACGTCGATTTGGACGTATTGCTTCGTTT
GTGGCCAGGTGATTCTCGCGGGGCAGGGGGATGACTGGTTCCTGGAAAAT
CTTTTTACCACCGAAGGTGGCGACAACCGAGCTATCATCGCTCCCCGGTA
TGTGTACATATTGCCACAAGGGTACATGGATGCGCCGTCATTTCGTCCGC
AAACCATGCTCGAGGCCAAGCTCCATGGCAAGCTCTCAGCTCCGTGGCCC
ACAAACATGAACTGTCTGCCCTCTCTTGTCTACACTCCACACGATTTTTC
CGAATTCTCCTCGTTCTTGTGGATGGTAGATGGATGAAAATATACTCATG
ATCTTGTCGACGGCGGGTATGAGAACGACGAGGCGCGAAATGTAATAGTA
TGCATGCACACAAGAGCTCGGCCCTCAACCTCGAGCTGCATTAATTCAAA
CCAAAGCTACACAGCACCATGTATACGTCGGCTTGCTTGCCTGCTTGACG
ACAGGTGGACGCACCTCTTGGAATCGGGTTCACGATCCCTCTTTCACCAA
CTGCTTCTTGGTGGTGGAAGAAACAATCCATTATGACAAAAAAAAGTGCG
TACGTCAATGCGGTTCAATGTGTGGCCTCAACCGCAATTTAAATGAAACC
AGGTTTCCCTCTTGTCTGGCGCGAAGAAATCGACAGGAGGAGTGAATATT
ATTCCTGTTTCGTGCAAGACCTCGAATACAACGCGCCAACGGGCAAAATC
ACGATTGCCATGGTTGTTCCTTTCAAACGTTCCCACTACGCGCCATCGGT
TCAATAATTATGCAGGCTGGGAATGCTCCAGGCGCTGGCCGGCCTCGCCC
CCGTGTTCAAGTCTGGCTGCAGCGATGTGAGTCATTGCAAAACTATTTCG
AAAAATGAGCAATGAAACATCAAGAGCAGTGTGTGGCATGTATGTTCCAG
CCTTACATTATTTTTTGGGCTTTCGGAAGACAATAGTGGTGCACGAGCGA
GCTCCAATGACCGGGCAGTATACTGTAGTTATTGGTCTCCCTTCTGACAT
TGTTCTCGAGGCATCCTCACTCAGCGGACTGTCGGCAGCAACATCGTTGC
GTGCGAAATTAGTTCCAAACCAACGTGGTTCAAAGGTACTAGCTCCGCTC
CGACAACGCAACGAAACCAAGCGCTTCCCCTGTCTGCCTGTCTGTGTGTG
TTCGGCCAATCAGCTCAGCGGCGAGGTTCGGCTGTCGCTCGAGGACGAAC
GGTTCCCCTGGAGGTTCGACAACGAAGACTGCAGCGGCTTCACTATCACG
GCTCGGGAACAAAGCATTCCGGACGGCGTGGTCCTCCCCGCCGGCGGGAA
GATCTTCCTCGTATGGGAAGCCACCGAAGTGAAGTGGGTGTGGAGCGGCG
GCGTCGTTCCTGCAGTTCCCGGCAACGCCCGCTGGGTTTTGCAAAAGGTG
GGCCCGGACGAGGATGGGGTTACGTGTACAAGTACCATTCAAACTTTTCC
GTCGCAACCATGCTGCACTGACGACTGAAGAAGGCAGAGAGACTGGCGCA
GAGGCTCCCGAACAGCTAGCTCTTCTTCCAATAGCCAACTCTGCCTGAAA
ACTCTGCCTGAAACCCGTGCCATTAAAACTTGTTGAAGTATTCACGGTTT
GGAGAAGCGCGTGCGGACCGGCTTGGACACGGTGCAGATTTGTGTGGCTG
TTTCGACTTCAACTCCAAACCATTGATCTGACACTTATCCTCCAGCACAG
AAAGCAACGCACCATTCGCAGAAGCCCCCTACAATAATGTGGTTGAGCTG
ACGACTATGTAAGATATTGATTTCCTGGGATTCGTAGGGTTGAGCGCTTC
CTGGCGCGGTCTTATCGTCCGCAGTACCGTCATGCGCAGTACATCGAGAA
CATAAACAAACATTGAACGACCACGAAACGCAGGATATCGCGCCAAACTC
ACACGCTATTGAACACGGCCATGGCCTCGGAACAACGGGGACGAAGTATA
GAAAACACGGTTTTACTGGGGATGCTTTCTTTTCTCTCGCACTGAAGCGC
CCATAATAATGAATCCCTATCGTACGCCGTTATCAGTATTACACGTGTAG
GTTGAGCCGGTTAATGATCCTCCGAAACAGGTGAATATATATCACACGGA
AGAGCACCCGCAATGACCGCCACAATACCATGCACATTCTTCGCGTGCAG
GTCAAGCCTGTGAACGATGCCCTGGAGCAGGTGAAGATATCTCTCTTCAC
GAAGGAGTTCGCCCTACCCCGGGAACGGTTCGTGGCCCAGGCCGACCGGA
GCGTGGTACTTACTGCAGAGGGCGACAAATGGTTCCTCAGGTGCGTTGTT
GTGACTGATACGCCTTCCAGCACGTGGGATACCACGATCGTATCACCGTG
AAACCTCCTCTAGCTTATTTTGTGGCCCCCTGAACTCGCTGCTCGATCAA
CACTTGTTCACCCCCGTCTCCTTACCCCCCTCACCGACATACCGCCACCC
CCACATCTGTCGCCATTTTGGGGTTCATTGTCTCTGTCCCAGGTCGTCCT
CCAAAGAGGATGACTCTGTCAAGTCCAAGACCAGTGCAATTCTGGCCCCT
AGCCTCGGCCCCCTCCAGGTGCTGGCCCAGCTGGCCCCAATCTTCCCCCC
GAAGACAAAAAGCGAGTCCTCTCCCGCCCCTAAGACTGGAGACCACGGAG
GACAGCATGTACCGTCCTGTGACGACATGGTGGATCAGAGGGGAGAGCTC
GGGCTCAGCGTCGCCACGAACGGAAAGGATTTTCCGTGGACGTTTGAGGA
GAGGGCCGAGGGCGGCGTCACCGTCACGGCCACCGCCCCCCCCGAGCCAG
CCTTCCCCGCGGGGGGCAGGGTGTACCTGGTCTGGGAGCTTCCGAATATG
GTGAAGTGGCAATTCTCCGGTGGGCTCGTGGCGGAAGTACCCCCCGGCGC
TCTGTGGGCCGTCTCGCCTGTTGATAGAGGAGGAGGAGGAGGAGGAGGAG
GGAAGGAGAGCGCCTGTGGTGTTGTGAAGCACGTGCCTGCCGCTGCTGGT
TCGTCTACGACGATCGCAGATACCTCGAGTGGTTTGGGCCCTTAAAAACG
GCGTTAAAAATATCGAGAAACATGAAGAAGAGTGGACCATCTTTTCGCGA
TATTGCCTCTCGTCTAATTTCCTGTTTGTTATCGACTTGTACGAAATGGT
GGCGAAATCTTCAACAATGCTCAATACTGTAGCGTGGGGAAAAAGCCAAG
CTACCTACTGTAGGGGGACGTCTTGTTGTTGATGTGCGTTAACGATACTT
TGGTCGAAAAAAGGGGGTACATTGATGTGGCGCGGGGATCACATGGCGAT
GACATCATTCCGTGATTGGATTGAATTTCGCGATATTTTTTCGTTGAATT
GAACTATAAATCACAGAGAGGTAATGAATTTCGACGTTCCTCTAACGAGA
GTCAAATTTGTTTGATGTTCTCTCGAGTACACAGAGGAGGCTTCCCCCCC
CGCCCCCCAGAGCCTTTGGACGTTTGTGGTGAAGGTAGCTCAATGCACGT
CCGGCTACATGAGAGACTTGATTTTCATGGGTGGAGGGACTGGTACCACC
GCACGGAGTGGTCTCTTCGGTCTTCGAGTGTAGTGAATTGGCACAGGCGA
ATCTGATGATGGGACGTACGCTTAGTGAATCAATCTACGAGAGAAAGATA
TTACATCTGTGAAAGTTCAGAATCGGCGTACGTTCAACATGGTGGACATT
GGGCAGTGTGGAGCAGTAATCCGACCACCTATACTGTAGCAGGTGACGGA
CGTTAGGAATGTTCCTCCTTTGGATTCATTCCAACTGGCCTTGATTTGCT
TTGCGTGCGTCACCTGCTGGTGCGATGACAACCTACTGCACAGCATGGGA
CACACGCTCAGACATTAGCAACACAACCAATTCCAACTGCGTAGACCGTG
TTGTCACCCTAATATACACACCAGGTATATATTTACAGGAAAGTCCATCG
CGTTTCACTAGAACTACAGCTAGGCATTATTTTTCAGTATATTTCTTCCA
CATGTACATGAGCACTTGTGAGCACAGGCTAGGGGGCACGCAGATGCCCC
AAGACTCCCCTAGGCCATACGGTGCCAACAATATATTCGCGAAATGGAGA
GTGAAGGTTGCGATAGAGAGTGGGCTGTACGTGGAATTGAATACATATGT
TGAGAGTATTTTGAATTTTGTCGAATAGAACTTGAAGCCTTTTCCGCCAG
GAAACGAGCAGATTTTGTAGACACGTTTTTGATGGGCTCGAATTGCAGAG
GACAAGGTTTTTTAAGGAAAACGAAGAGAAAATGCTTCTTCCGGGGAACA
GGCCTGCAATCCCTATGTAAGTAAGTTTCATAGATCTATGTCCTCGTGGG
AACTTGCCACGGATAGGGACCACATAAATTTGAGACTCGCACCAATGGAC
back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig10383:361..5810+ >mRNA_Ecto-sp8_S_contig10383.625.1 ID=mRNA_Ecto-sp8_S_contig10383.625.1|Name=mRNA_Ecto-sp8_S_contig10383.625.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10383:361..5810+ (Ectocarpus species8 EcLAC_412) ATGTGCGCAGAAAGGAAGGGAGGCGGGGAATTAGTTCTGCAAAAGTCCGC AGTAAACCCGTCCCGCCCAAGCCAGATCCCCCCAACCCAACCTCATTCAC ACCCTGCACAGCTCTGCTTCAGAACTATCCAGATAGCAGCAAGTACAGGA CGCCCAAGAATTATTCGCGACATGGAGCAGTTCAAGATATCCACGGTTTC TAAGCAATTCCCCAACCAGCTAGCCCAGGGCAAGGAAGGGAAGGTGATTC TCGCGGGGCAGGGGGATGACTGGTTCCTGGAAAATCTTTTTACCACCGAA GGTGGCGACAACCGAGCTATCATCGCTCCCCGGCTGGGAATGCTCCAGGC GCTGGCCGGCCTCGCCCCCGTGTTCAAGTCTGGCTGCAGCGATCTCAGCG GCGAGGTTCGGCTGTCGCTCGAGGACGAACGGTTCCCCTGGAGGTTCGAC AACGAAGACTGCAGCGGCTTCACTATCACGGCTCGGGAACAAAGCATTCC GGACGGCGTGGTCCTCCCCGCCGGCGGGAAGATCTTCCTCGTATGGGAAG CCACCGAAGTGAAGTGGGTGTGGAGCGGCGGCGTCGTTCCTGCAGTTCCC GGCAACGCCCGCTGGGTTTTGCAAAAGGTCAAGCCTGTGAACGATGCCCT GGAGCAGGTGAAGATATCTCTCTTCACGAAGGAGTTCGCCCTACCCCGGG AACGGTTCGTGGCCCAGGCCGACCGGAGCGTGGTACTTACTGCAGAGGGC GACAAATGGTTCCTCAGGTCGTCCTCCAAAGAGGATGACTCTGTCAAGTC CAAGACCAGTGCAATTCTGGCCCCTAGCCTCGGCCCCCTCCAGGTGCTGG CCCAGCTGGCCCCAATCTTCCCCCCGAAGACAAAAAGCGAGTCCTCTCCC GCCCCTAAGACTGGAGACCACGGAGGACAGCATGTACCGTCCTGTGACGA CATGGTGGATCAGAGGGGAGAGCTCGGGCTCAGCGTCGCCACGAACGGAA AGGATTTTCCGTGGACGTTTGAGGAGAGGGCCGAGGGCGGCGTCACCGTC ACGGCCACCGCCCCCCCCGAGCCAGCCTTCCCCGCGGGGGGCAGGGTGTA CCTGGTCTGGGAGCTTCCGAATATGGTGAAGTGGCAATTCTCCGGTGGGC TCGTGGCGGAAGTACCCCCCGGCGCTCTGTGGGCCGTCTCGCCTGTTGAT AGAGGAGGAGGAGGAGGAGGAGGAGGGAAGGAGAGCGCCTGTGGTGTTGT GAAGCACGTGCCTGCCGCTGCTGGTTCGTCTACGACGATCGCAGATACCT CGAGTGGTTTGGGCCCTTAA back to top
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