mRNA_Ecto-sp8_S_contig10383.625.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10383.625.1
Unique NamemRNA_Ecto-sp8_S_contig10383.625.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10383.625.1 vs. uniprot
Match: D7G995_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G995_ECTSI)

HSP 1 Score: 664 bits (1712), Expect = 6.900e-231
Identity = 342/382 (89.53%), Postives = 349/382 (91.36%), Query Frame = 3
Query:  246 MEQFKISTVSKQFPNQLAQGKEGKVILAGQGDDWFLENLFTTEGGDNRAIIAPRLGMLQALAGLAPVFKSGCSDLSGEVRLSLEDERFPWRFDNEDCSGFTITAREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVPGNARWVLQKVKPVNDALEQVKISLFTKEFALPRERFVAQADRSVVLTAEGDKWFLRSSSKEDDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKTKSESSPAPKTGDHGGQHVPSCDDMVDQRGELGLSVATNGKDFPWTFEERAEGGVTVTATAPPEPAFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVDRGXXXXXXXXXSACGVVKHVPAAAGSSTTIADTSSGLGP 1391
            MEQFKIST+SKQFPNQLAQGKEGKVILAGQGDDWFLENLF+TEGGDNRAIIAPRLGMLQALA LAPVFK GCSDLSGEVRLSL+DERFPWRFDNED SGFTI AREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVPGNARWVLQKV+PVNDALEQVKISLFTK FALPRERFVAQADRSVVL AEGDKWFLRSSSK DDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKT++ESSP PK G HG QH PSCDDMVDQ GELGLSVATNG DFPWTFEERAEGGVT+TATAPPE AFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVD  XXXXXXXXX                TTIADTSSGLGP
Sbjct:    1 MEQFKISTLSKQFPNQLAQGKEGKVILAGQGDDWFLENLFSTEGGDNRAIIAPRLGMLQALASLAPVFKPGCSDLSGEVRLSLDDERFPWRFDNEDSSGFTIAAREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVPGNARWVLQKVQPVNDALEQVKISLFTKAFALPRERFVAQADRSVVLAAEGDKWFLRSSSKGDDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKTRNESSPTPKAGGHGEQHAPSCDDMVDQSGELGLSVATNGNDFPWTFEERAEGGVTITATAPPELAFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVDGXXXXXXXXXXXXXXXXXXXXXXXXXXTTIADTSSGLGP 382          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10383.625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G995_ECTSI6.900e-23189.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10383contigEcto-sp8_S_contig10383:361..5810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2749
Hectar predicted targeting categoryother localisation
Exons7
Cds size1320
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10383.625.1prot_Ecto-sp8_S_contig10383.625.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10383 435..4455 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.6370206-UTR-Ecto-sp8_S_contig10383:360..4341681143137.6370206-UTR-Ecto-sp8_S_contig10383:360..434Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10383 361..434 +
1681143137.7252128-UTR-Ecto-sp8_S_contig10383:4455..58101681143137.7252128-UTR-Ecto-sp8_S_contig10383:4455..5810Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10383 4456..5810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.6507177-CDS-Ecto-sp8_S_contig10383:434..5821681143137.6507177-CDS-Ecto-sp8_S_contig10383:434..582Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10383 435..582 +
1681143137.659528-CDS-Ecto-sp8_S_contig10383:1141..12361681143137.659528-CDS-Ecto-sp8_S_contig10383:1141..1236Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10383 1142..1236 +
1681143137.66886-CDS-Ecto-sp8_S_contig10383:1418..15071681143137.66886-CDS-Ecto-sp8_S_contig10383:1418..1507Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10383 1419..1507 +
1681143137.681715-CDS-Ecto-sp8_S_contig10383:2175..22361681143137.681715-CDS-Ecto-sp8_S_contig10383:2175..2236Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10383 2176..2236 +
1681143137.6926658-CDS-Ecto-sp8_S_contig10383:2573..28071681143137.6926658-CDS-Ecto-sp8_S_contig10383:2573..2807Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10383 2574..2807 +
1681143137.7046425-CDS-Ecto-sp8_S_contig10383:3560..37001681143137.7046425-CDS-Ecto-sp8_S_contig10383:3560..3700Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10383 3561..3700 +
1681143137.7162638-CDS-Ecto-sp8_S_contig10383:3902..44551681143137.7162638-CDS-Ecto-sp8_S_contig10383:3902..4455Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10383 3903..4455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10383.625.1

>prot_Ecto-sp8_S_contig10383.625.1 ID=prot_Ecto-sp8_S_contig10383.625.1|Name=mRNA_Ecto-sp8_S_contig10383.625.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=440bp
MCAERKGGGELVLQKSAVNPSRPSQIPPTQPHSHPAQLCFRTIQIAASTG
RPRIIRDMEQFKISTVSKQFPNQLAQGKEGKVILAGQGDDWFLENLFTTE
GGDNRAIIAPRLGMLQALAGLAPVFKSGCSDLSGEVRLSLEDERFPWRFD
NEDCSGFTITAREQSIPDGVVLPAGGKIFLVWEATEVKWVWSGGVVPAVP
GNARWVLQKVKPVNDALEQVKISLFTKEFALPRERFVAQADRSVVLTAEG
DKWFLRSSSKEDDSVKSKTSAILAPSLGPLQVLAQLAPIFPPKTKSESSP
APKTGDHGGQHVPSCDDMVDQRGELGLSVATNGKDFPWTFEERAEGGVTV
TATAPPEPAFPAGGRVYLVWELPNMVKWQFSGGLVAEVPPGALWAVSPVD
RGGGGGGGGKESACGVVKHVPAAAGSSTTIADTSSGLGP*
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mRNA from alignment at Ecto-sp8_S_contig10383:361..5810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10383.625.1 ID=mRNA_Ecto-sp8_S_contig10383.625.1|Name=mRNA_Ecto-sp8_S_contig10383.625.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5450bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10383:361..5810+ (Ectocarpus species8 EcLAC_412)
GTACGACAGGAGCATGGCACCGTTCTTCACACCAAGGATGTCCGGCGGGC CACGCGCCACGACCTCACAGCAGTATGTGCGCAGAAAGGAAGGGAGGCGG GGAATTAGTTCTGCAAAAGTCCGCAGTAAACCCGTCCCGCCCAAGCCAGA TCCCCCCAACCCAACCTCATTCACACCCTGCACAGCTCTGCTTCAGAACT ATCCAGATAGCAGCAAGTACAGGTGAGCCACGAAGGGAACGGCTACAGGA CCAGTGCACACGCAACGTATGTGCGCGCACCCAACGCCCTCCTCGGGTTT GTTCTTAATTTTGTTTTGGTGCGATGAACGGCAACACACCGCAGCCCTCG CCGTAGAAAATTGAGAGGTTGTTTTTAGCACCTGGAACATCGGTATTGGA GGTGGCCACACGGATATCCTGAGAAGTTTGCGTACCGATGAATGTAAGTT GTGTCCGTCCCCCACTGTCCATGTCGTCAATCATCGATTTGTCCACAGGG AGCATAGGGACCGCAAGGAAGCAAGGGTACGCAGCACATTCAAAGCACAT TCAAAGCACGTCCCTCCATAGTCTAGATTTGATTCCTCCGCAAGAAGAGC GCACGCCTAGATAGAACGAACGGTACTGAAGAACCCCGCGCATGCCAATC ATTCTTCCGGTTTGCATTCCGTTCTTGGTCCCTGGCGCCCCGAAAGCACC ACATCTATCTCCCATCTTTGCAGATGGATACTTCACACACAGTGTACATG ACTTGCCAACCCGAACACGTAACTTTTTCAGGACGCCCAAGAATTATTCG CGACATGGAGCAGTTCAAGATATCCACGGTTTCTAAGCAATTCCCCAACC AGCTAGCCCAGGGCAAGGAAGGGAAGGTAAGGTCGTCCTCGGCCGATCAG AGCACCCACGTACGATTGAATCGTGTGTGGATATCGCACCATGTTTTATC CTGATGTATGTGTAATCGCGCATGCCATTGACTGAGTGTGTCAACCTCTG AACGAACGATTTCTCGCACTTGACGTCGATTTGGACGTATTGCTTCGTTT GTGGCCAGGTGATTCTCGCGGGGCAGGGGGATGACTGGTTCCTGGAAAAT CTTTTTACCACCGAAGGTGGCGACAACCGAGCTATCATCGCTCCCCGGTA TGTGTACATATTGCCACAAGGGTACATGGATGCGCCGTCATTTCGTCCGC AAACCATGCTCGAGGCCAAGCTCCATGGCAAGCTCTCAGCTCCGTGGCCC ACAAACATGAACTGTCTGCCCTCTCTTGTCTACACTCCACACGATTTTTC CGAATTCTCCTCGTTCTTGTGGATGGTAGATGGATGAAAATATACTCATG ATCTTGTCGACGGCGGGTATGAGAACGACGAGGCGCGAAATGTAATAGTA TGCATGCACACAAGAGCTCGGCCCTCAACCTCGAGCTGCATTAATTCAAA CCAAAGCTACACAGCACCATGTATACGTCGGCTTGCTTGCCTGCTTGACG ACAGGTGGACGCACCTCTTGGAATCGGGTTCACGATCCCTCTTTCACCAA CTGCTTCTTGGTGGTGGAAGAAACAATCCATTATGACAAAAAAAAGTGCG TACGTCAATGCGGTTCAATGTGTGGCCTCAACCGCAATTTAAATGAAACC AGGTTTCCCTCTTGTCTGGCGCGAAGAAATCGACAGGAGGAGTGAATATT ATTCCTGTTTCGTGCAAGACCTCGAATACAACGCGCCAACGGGCAAAATC ACGATTGCCATGGTTGTTCCTTTCAAACGTTCCCACTACGCGCCATCGGT TCAATAATTATGCAGGCTGGGAATGCTCCAGGCGCTGGCCGGCCTCGCCC CCGTGTTCAAGTCTGGCTGCAGCGATGTGAGTCATTGCAAAACTATTTCG AAAAATGAGCAATGAAACATCAAGAGCAGTGTGTGGCATGTATGTTCCAG CCTTACATTATTTTTTGGGCTTTCGGAAGACAATAGTGGTGCACGAGCGA GCTCCAATGACCGGGCAGTATACTGTAGTTATTGGTCTCCCTTCTGACAT TGTTCTCGAGGCATCCTCACTCAGCGGACTGTCGGCAGCAACATCGTTGC GTGCGAAATTAGTTCCAAACCAACGTGGTTCAAAGGTACTAGCTCCGCTC CGACAACGCAACGAAACCAAGCGCTTCCCCTGTCTGCCTGTCTGTGTGTG TTCGGCCAATCAGCTCAGCGGCGAGGTTCGGCTGTCGCTCGAGGACGAAC GGTTCCCCTGGAGGTTCGACAACGAAGACTGCAGCGGCTTCACTATCACG GCTCGGGAACAAAGCATTCCGGACGGCGTGGTCCTCCCCGCCGGCGGGAA GATCTTCCTCGTATGGGAAGCCACCGAAGTGAAGTGGGTGTGGAGCGGCG GCGTCGTTCCTGCAGTTCCCGGCAACGCCCGCTGGGTTTTGCAAAAGGTG GGCCCGGACGAGGATGGGGTTACGTGTACAAGTACCATTCAAACTTTTCC GTCGCAACCATGCTGCACTGACGACTGAAGAAGGCAGAGAGACTGGCGCA GAGGCTCCCGAACAGCTAGCTCTTCTTCCAATAGCCAACTCTGCCTGAAA ACTCTGCCTGAAACCCGTGCCATTAAAACTTGTTGAAGTATTCACGGTTT GGAGAAGCGCGTGCGGACCGGCTTGGACACGGTGCAGATTTGTGTGGCTG TTTCGACTTCAACTCCAAACCATTGATCTGACACTTATCCTCCAGCACAG AAAGCAACGCACCATTCGCAGAAGCCCCCTACAATAATGTGGTTGAGCTG ACGACTATGTAAGATATTGATTTCCTGGGATTCGTAGGGTTGAGCGCTTC CTGGCGCGGTCTTATCGTCCGCAGTACCGTCATGCGCAGTACATCGAGAA CATAAACAAACATTGAACGACCACGAAACGCAGGATATCGCGCCAAACTC ACACGCTATTGAACACGGCCATGGCCTCGGAACAACGGGGACGAAGTATA GAAAACACGGTTTTACTGGGGATGCTTTCTTTTCTCTCGCACTGAAGCGC CCATAATAATGAATCCCTATCGTACGCCGTTATCAGTATTACACGTGTAG GTTGAGCCGGTTAATGATCCTCCGAAACAGGTGAATATATATCACACGGA AGAGCACCCGCAATGACCGCCACAATACCATGCACATTCTTCGCGTGCAG GTCAAGCCTGTGAACGATGCCCTGGAGCAGGTGAAGATATCTCTCTTCAC GAAGGAGTTCGCCCTACCCCGGGAACGGTTCGTGGCCCAGGCCGACCGGA GCGTGGTACTTACTGCAGAGGGCGACAAATGGTTCCTCAGGTGCGTTGTT GTGACTGATACGCCTTCCAGCACGTGGGATACCACGATCGTATCACCGTG AAACCTCCTCTAGCTTATTTTGTGGCCCCCTGAACTCGCTGCTCGATCAA CACTTGTTCACCCCCGTCTCCTTACCCCCCTCACCGACATACCGCCACCC CCACATCTGTCGCCATTTTGGGGTTCATTGTCTCTGTCCCAGGTCGTCCT CCAAAGAGGATGACTCTGTCAAGTCCAAGACCAGTGCAATTCTGGCCCCT AGCCTCGGCCCCCTCCAGGTGCTGGCCCAGCTGGCCCCAATCTTCCCCCC GAAGACAAAAAGCGAGTCCTCTCCCGCCCCTAAGACTGGAGACCACGGAG GACAGCATGTACCGTCCTGTGACGACATGGTGGATCAGAGGGGAGAGCTC GGGCTCAGCGTCGCCACGAACGGAAAGGATTTTCCGTGGACGTTTGAGGA GAGGGCCGAGGGCGGCGTCACCGTCACGGCCACCGCCCCCCCCGAGCCAG CCTTCCCCGCGGGGGGCAGGGTGTACCTGGTCTGGGAGCTTCCGAATATG GTGAAGTGGCAATTCTCCGGTGGGCTCGTGGCGGAAGTACCCCCCGGCGC TCTGTGGGCCGTCTCGCCTGTTGATAGAGGAGGAGGAGGAGGAGGAGGAG GGAAGGAGAGCGCCTGTGGTGTTGTGAAGCACGTGCCTGCCGCTGCTGGT TCGTCTACGACGATCGCAGATACCTCGAGTGGTTTGGGCCCTTAAAAACG GCGTTAAAAATATCGAGAAACATGAAGAAGAGTGGACCATCTTTTCGCGA TATTGCCTCTCGTCTAATTTCCTGTTTGTTATCGACTTGTACGAAATGGT GGCGAAATCTTCAACAATGCTCAATACTGTAGCGTGGGGAAAAAGCCAAG CTACCTACTGTAGGGGGACGTCTTGTTGTTGATGTGCGTTAACGATACTT TGGTCGAAAAAAGGGGGTACATTGATGTGGCGCGGGGATCACATGGCGAT GACATCATTCCGTGATTGGATTGAATTTCGCGATATTTTTTCGTTGAATT GAACTATAAATCACAGAGAGGTAATGAATTTCGACGTTCCTCTAACGAGA GTCAAATTTGTTTGATGTTCTCTCGAGTACACAGAGGAGGCTTCCCCCCC CGCCCCCCAGAGCCTTTGGACGTTTGTGGTGAAGGTAGCTCAATGCACGT CCGGCTACATGAGAGACTTGATTTTCATGGGTGGAGGGACTGGTACCACC GCACGGAGTGGTCTCTTCGGTCTTCGAGTGTAGTGAATTGGCACAGGCGA ATCTGATGATGGGACGTACGCTTAGTGAATCAATCTACGAGAGAAAGATA TTACATCTGTGAAAGTTCAGAATCGGCGTACGTTCAACATGGTGGACATT GGGCAGTGTGGAGCAGTAATCCGACCACCTATACTGTAGCAGGTGACGGA CGTTAGGAATGTTCCTCCTTTGGATTCATTCCAACTGGCCTTGATTTGCT TTGCGTGCGTCACCTGCTGGTGCGATGACAACCTACTGCACAGCATGGGA CACACGCTCAGACATTAGCAACACAACCAATTCCAACTGCGTAGACCGTG TTGTCACCCTAATATACACACCAGGTATATATTTACAGGAAAGTCCATCG CGTTTCACTAGAACTACAGCTAGGCATTATTTTTCAGTATATTTCTTCCA CATGTACATGAGCACTTGTGAGCACAGGCTAGGGGGCACGCAGATGCCCC AAGACTCCCCTAGGCCATACGGTGCCAACAATATATTCGCGAAATGGAGA GTGAAGGTTGCGATAGAGAGTGGGCTGTACGTGGAATTGAATACATATGT TGAGAGTATTTTGAATTTTGTCGAATAGAACTTGAAGCCTTTTCCGCCAG GAAACGAGCAGATTTTGTAGACACGTTTTTGATGGGCTCGAATTGCAGAG GACAAGGTTTTTTAAGGAAAACGAAGAGAAAATGCTTCTTCCGGGGAACA GGCCTGCAATCCCTATGTAAGTAAGTTTCATAGATCTATGTCCTCGTGGG AACTTGCCACGGATAGGGACCACATAAATTTGAGACTCGCACCAATGGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10383:361..5810+

>mRNA_Ecto-sp8_S_contig10383.625.1 ID=mRNA_Ecto-sp8_S_contig10383.625.1|Name=mRNA_Ecto-sp8_S_contig10383.625.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10383:361..5810+ (Ectocarpus species8 EcLAC_412)
ATGTGCGCAGAAAGGAAGGGAGGCGGGGAATTAGTTCTGCAAAAGTCCGC
AGTAAACCCGTCCCGCCCAAGCCAGATCCCCCCAACCCAACCTCATTCAC
ACCCTGCACAGCTCTGCTTCAGAACTATCCAGATAGCAGCAAGTACAGGA
CGCCCAAGAATTATTCGCGACATGGAGCAGTTCAAGATATCCACGGTTTC
TAAGCAATTCCCCAACCAGCTAGCCCAGGGCAAGGAAGGGAAGGTGATTC
TCGCGGGGCAGGGGGATGACTGGTTCCTGGAAAATCTTTTTACCACCGAA
GGTGGCGACAACCGAGCTATCATCGCTCCCCGGCTGGGAATGCTCCAGGC
GCTGGCCGGCCTCGCCCCCGTGTTCAAGTCTGGCTGCAGCGATCTCAGCG
GCGAGGTTCGGCTGTCGCTCGAGGACGAACGGTTCCCCTGGAGGTTCGAC
AACGAAGACTGCAGCGGCTTCACTATCACGGCTCGGGAACAAAGCATTCC
GGACGGCGTGGTCCTCCCCGCCGGCGGGAAGATCTTCCTCGTATGGGAAG
CCACCGAAGTGAAGTGGGTGTGGAGCGGCGGCGTCGTTCCTGCAGTTCCC
GGCAACGCCCGCTGGGTTTTGCAAAAGGTCAAGCCTGTGAACGATGCCCT
GGAGCAGGTGAAGATATCTCTCTTCACGAAGGAGTTCGCCCTACCCCGGG
AACGGTTCGTGGCCCAGGCCGACCGGAGCGTGGTACTTACTGCAGAGGGC
GACAAATGGTTCCTCAGGTCGTCCTCCAAAGAGGATGACTCTGTCAAGTC
CAAGACCAGTGCAATTCTGGCCCCTAGCCTCGGCCCCCTCCAGGTGCTGG
CCCAGCTGGCCCCAATCTTCCCCCCGAAGACAAAAAGCGAGTCCTCTCCC
GCCCCTAAGACTGGAGACCACGGAGGACAGCATGTACCGTCCTGTGACGA
CATGGTGGATCAGAGGGGAGAGCTCGGGCTCAGCGTCGCCACGAACGGAA
AGGATTTTCCGTGGACGTTTGAGGAGAGGGCCGAGGGCGGCGTCACCGTC
ACGGCCACCGCCCCCCCCGAGCCAGCCTTCCCCGCGGGGGGCAGGGTGTA
CCTGGTCTGGGAGCTTCCGAATATGGTGAAGTGGCAATTCTCCGGTGGGC
TCGTGGCGGAAGTACCCCCCGGCGCTCTGTGGGCCGTCTCGCCTGTTGAT
AGAGGAGGAGGAGGAGGAGGAGGAGGGAAGGAGAGCGCCTGTGGTGTTGT
GAAGCACGTGCCTGCCGCTGCTGGTTCGTCTACGACGATCGCAGATACCT
CGAGTGGTTTGGGCCCTTAA
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