mRNA_Ecto-sp8_S_contig103822.624.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103822.624.1
Unique NamemRNA_Ecto-sp8_S_contig103822.624.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103822.624.1 vs. uniprot
Match: F0XX96_AURAN (Vacuolar protein 8 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX96_AURAN)

HSP 1 Score: 73.6 bits (179), Expect = 7.780e-14
Identity = 33/43 (76.74%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 IIEEGGLQPVITLSYSSDPDVHQQAAAAMRGLSVSDENKMKIV 129
            ++E+GGLQP+ITL+Y+ DPDVHQQAAAA+RGLSVS ENKMK+V
Sbjct:    1 MVEQGGLQPLITLAYAHDPDVHQQAAAALRGLSVSAENKMKVV 43
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BLAST of mRNA_Ecto-sp8_S_contig103822.624.1 vs. uniprot
Match: A0A7S1XSM9_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSM9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.660e-14
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 IIEEGGLQPVITLSYSSDPDVHQQAAAAMRGLSVSDENKMKI 126
            I+EEGG+QP+ITL++S DPDVHQQA  A+RGLSV+DE KM+I
Sbjct:    6 IVEEGGIQPIITLAFSDDPDVHQQAVTALRGLSVTDECKMRI 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103822.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0XX96_AURAN7.780e-1476.74Vacuolar protein 8 (Fragment) n=1 Tax=Aureococcus ... [more]
A0A7S1XSM9_9STRA9.660e-1471.43Vacuolar protein 8 (Fragment) n=1 Tax=Phaeomonas p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103822contigEcto-sp8_S_contig103822:2..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.2
Seed ortholog evalue4.8e-11
Seed eggNOG ortholog44056.XP_009032773.1
Model size183
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.nucleus-vacuole junction assembly
EggNOG OGsKOG4224@1,KOG4224@2759
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.5946794-CDS-Ecto-sp8_S_contig103822:1..861681143137.5946794-CDS-Ecto-sp8_S_contig103822:1..86Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103822 2..86 -
1681143137.607726-CDS-Ecto-sp8_S_contig103822:418..5161681143137.607726-CDS-Ecto-sp8_S_contig103822:418..516Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103822 419..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103822.624.1prot_Ecto-sp8_S_contig103822.624.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103822 2..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103822.624.1

>prot_Ecto-sp8_S_contig103822.624.1 ID=prot_Ecto-sp8_S_contig103822.624.1|Name=mRNA_Ecto-sp8_S_contig103822.624.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=61bp
IIEEGGLQPVITLSYSSDPDVHQQAAAAMRGLSVSDENKMKIVQEGGLEP
LVQLLASEDIE
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mRNA from alignment at Ecto-sp8_S_contig103822:2..516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103822.624.1 ID=mRNA_Ecto-sp8_S_contig103822.624.1|Name=mRNA_Ecto-sp8_S_contig103822.624.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=515bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103822:2..516- (Ectocarpus species8 EcLAC_412)
ATTATCGAAGAAGGAGGCCTGCAGCCAGTCATCACGTTGTCCTACAGTTC
AGATCCGGATGTCCACCAGCAAGCAGCGGCTGCAATGCGGGGACTCAGGT
GAGTTGAGTACGTATTGTGGAACAGGCGTGAGAGCGATCGGGGAGATGCT
TCTATTGTTTGTATCTGTAGTTCTTGGTGAGATAGAGGGCCAAGAAGAAG
GAGAAGAAAGAAGGGACTATGCGGGTTGGTGTCAGCGAGGTGTTTTAAGA
GTTGAAGATCGCCCTCAGGCCTTTTTCCACGGTGTGGCTGGCAACTGAAA
CGGATGGACCCTATACATCTTGGCGCAGTCCGCAGTCTGTGCCTCTTGAC
TGCCCTTGACCTCTTCTCCCTCTGGTTGTTGACTGTCGCGAACGAATACC
ATCCGTCGATCCGCGACGAACGGAAAACAGCGTATCTGACGAGAACAAGA
TGAAGATCGTACAAGAAGGTGGGCTGGAGCCGCTGGTCCAGCTCTTGGCC
TCCGAAGACATCGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103822:2..516-

>mRNA_Ecto-sp8_S_contig103822.624.1 ID=mRNA_Ecto-sp8_S_contig103822.624.1|Name=mRNA_Ecto-sp8_S_contig103822.624.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103822:2..516- (Ectocarpus species8 EcLAC_412)
ATTATCGAAGAAGGAGGCCTGCAGCCAGTCATCACGTTGTCCTACAGTTC
AGATCCGGATGTCCACCAGCAAGCAGCGGCTGCAATGCGGGGACTCAGCG
TATCTGACGAGAACAAGATGAAGATCGTACAAGAAGGTGGGCTGGAGCCG
CTGGTCCAGCTCTTGGCCTCCGAAGACATCGAA
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