mRNA_Ecto-sp8_S_contig10381.622.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10381.622.1
Unique NamemRNA_Ecto-sp8_S_contig10381.622.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: D8LF58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF58_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 9.750e-69
Identity = 113/128 (88.28%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:   13 MKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTGNIPKSPGGSXXXXXXXXXVSVPDTRVPQQP---RGGSPAFGPQDIWPPGRSGVDDLLGNLHDRLNS---ESPFHG 378
            MKDHPDCRYSLSSQKECSSNNGSF+CETIRRVFR+CPGLR EQVYDITTRDTGNIPKSPGGSXXXXXXXXXVSVP TR PQQP   RGGSPAFGPQDIWPPGRSG++DLLGNLHDRLN+   ESPF G
Sbjct:    1 MKDHPDCRYSLSSQKECSSNNGSFSCETIRRVFRNCPGLRPEQVYDITTRDTGNIPKSPGGSXXXXXXXXXVSVPGTRAPQQPQQPRGGSPAFGPQDIWPPGRSGMEDLLGNLHDRLNNFFKESPFAG 128
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: A0A067C561_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C561_SAPPC)

HSP 1 Score: 58.2 bits (139), Expect = 5.800e-8
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTG 171
            D  +HP+C Y+ S    C S NG   CETIR++FR CPG   E + + +T++ G
Sbjct:   10 DRAEHPECTYATSLSTACRSVNGDRTCETIRKIFRCCPGKPKELIINSSTKEEG 63
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: W4GTS3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GTS3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.970e-7
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTGN 174
            D ++HP+C +S +    C S NG   CET+RR+FR CPG +   + D+  +   N
Sbjct:   15 DREEHPECTHSTTISSSCRSINGDRQCETLRRIFRKCPGRQPALILDVKDQTQDN 69
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: A0A397FHF7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FHF7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.200e-7
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTGN 174
            D ++HP+C +S +    C S NG   CET+RR+FR CPG +   + D+  +   N
Sbjct:   15 DREEHPECTHSTTISSSCRSINGDRQCETLRRIFRKCPGRQPALILDVKDQTQDN 69
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: A0A024UVF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVF8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.690e-7
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTGN 174
            D ++HP+C YS +    C S +G   CET+RR+FR+CPG   + + D+      N
Sbjct:   15 DREEHPECTYSTTISSSCRSVHGDRQCETLRRIFRNCPGRPRKLILDVKDETQDN 69
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: A0A1V9Z7P6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7P6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.070e-6
Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTGN 174
            D K HP+C Y+ S    C + NG   CETIR+++R CPG + E V +      GN
Sbjct:   13 DKKMHPECSYASSVSTACRNVNGERMCETIRKIYRMCPGKKKELVINSKKTQEGN 67
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: A0A1V9Z7I5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7I5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.280e-6
Identity = 22/54 (40.74%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTG 171
            D   HP+C Y+ S    C S NG   CETIR++FR CPG   E + + ++++ G
Sbjct:   10 DKAAHPECSYATSLSTACRSVNGDRTCETIRKIFRVCPGKPKELIINSSSKEEG 63
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: A0A418DKN3_9STRA (Aurora kinase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DKN3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-6
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTGN 174
            D ++HP+C +S +    C S NG   CET+RR+FR CPG +   + D+  +   N
Sbjct:   38 DREEHPECTHSTTISSSCRSINGDRQCETLRRIFRKCPGRQPALILDVKDQTQDN 92
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BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Match: A0A3R7WFQ7_9STRA (Aurora kinase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WFQ7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-6
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:   10 DMKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTRDTGN 174
            D ++HP+C +S +    C S NG   CET+RR+FR CPG +   + D+  +   N
Sbjct:   38 DREEHPECTHSTTISSSCRSINGDRQCETLRRIFRKCPGRQPALILDVKDQTQDN 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10381.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LF58_ECTSI9.750e-6988.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067C561_SAPPC5.800e-842.59Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
W4GTS3_9STRA6.970e-738.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397FHF7_9STRA8.200e-738.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UVF8_9STRA9.690e-738.18Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9Z7P6_9STRA1.070e-641.82Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9Z7I5_9STRA1.280e-640.74Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A418DKN3_9STRA1.770e-638.18Aurora kinase n=2 Tax=Aphanomyces astaci TaxID=112... [more]
A0A3R7WFQ7_9STRA1.800e-638.18Aurora kinase n=2 Tax=Aphanomyces astaci TaxID=112... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10381contigEcto-sp8_S_contig10381:40..835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size393
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001780.1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.4820924-CDS-Ecto-sp8_S_contig10381:39..1711681143137.4820924-CDS-Ecto-sp8_S_contig10381:39..171Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10381 40..171 -
1681143137.4938378-CDS-Ecto-sp8_S_contig10381:574..8231681143137.4938378-CDS-Ecto-sp8_S_contig10381:574..823Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10381 575..823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.5036013-UTR-Ecto-sp8_S_contig10381:823..8351681143137.5036013-UTR-Ecto-sp8_S_contig10381:823..835Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10381 824..835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10381.622.1prot_Ecto-sp8_S_contig10381.622.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10381 40..823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10381.622.1

>prot_Ecto-sp8_S_contig10381.622.1 ID=prot_Ecto-sp8_S_contig10381.622.1|Name=mRNA_Ecto-sp8_S_contig10381.622.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=127bp
MKDHPDCRYSLSSQKECSSNNGSFACETIRRVFRSCPGLRAEQVYDITTR
DTGNIPKSPGGSSGGGGGGGGVSVPDTRVPQQPRGGSPAFGPQDIWPPGR
SGVDDLLGNLHDRLNSESPFHGHIVA*
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mRNA from alignment at Ecto-sp8_S_contig10381:40..835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10381.622.1 ID=mRNA_Ecto-sp8_S_contig10381.622.1|Name=mRNA_Ecto-sp8_S_contig10381.622.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=796bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10381:40..835- (Ectocarpus species8 EcLAC_412)
GTTCGTCCAGACATGAAGGATCACCCAGACTGCCGCTACAGCTTGTCCTC
CCAGAAGGAGTGCAGCAGCAACAACGGCAGCTTCGCCTGCGAGACCATCC
GCCGAGTCTTCAGAAGCTGCCCGGGGTTGCGAGCAGAGCAGGTCTACGAT
ATCACGACGAGAGACACCGGCAACATACCCAAGTCGCCGGGGGGGAGCAG
CGGCGGCGGCGGCGGCGGCGGCGGTGTATCCGTGCCAGACACTAGAGTAC
CACAGCAACCGGTGAGCCGCCCTAGGCCGTCGCGACTGACCCATGCCATG
CGCACAGAAGTAGCTCGTTTACTGTAGCCGCACATCCATTGGTGCGTTTT
GCGGTGTGTCTGCCGCCGTCTTGCGGCCTTTACGCTTCCGGTATTTTCGC
CTCTGCGTTTTCGATGGCATTTCGACGGCGCTATTTAGCCGACCAACACA
TCGATATGTTTCAGCGTCAGCCGAAAGAGATCTTCTAAATAGTCCGCTGG
GCTGCTGCGGAAGAGACTGAACGGCAGGGTCGAGCCACGGCGTGTTGGTG
TGCTGCTTTTCTGTGTTGACGTCGACAGCGCTTGTGCACAATCGAATGAC
AAACACCCATGTTGGCGCGTGATCTAACTCCCCATCTCTTGTCCTTTTGG
CTCGCGTCTCAAAGCGTGGTGGAAGTCCGGCTTTCGGCCCCCAAGATATC
TGGCCGCCTGGGAGAAGCGGTGTGGACGACTTGCTCGGGAACCTTCACGA
CAGACTCAACAGTGAGTCCCCTTTTCATGGGCACATCGTAGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10381:40..835-

>mRNA_Ecto-sp8_S_contig10381.622.1 ID=mRNA_Ecto-sp8_S_contig10381.622.1|Name=mRNA_Ecto-sp8_S_contig10381.622.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10381:40..835- (Ectocarpus species8 EcLAC_412)
ATGAAGGATCACCCAGACTGCCGCTACAGCTTGTCCTCCCAGAAGGAGTG
CAGCAGCAACAACGGCAGCTTCGCCTGCGAGACCATCCGCCGAGTCTTCA
GAAGCTGCCCGGGGTTGCGAGCAGAGCAGGTCTACGATATCACGACGAGA
GACACCGGCAACATACCCAAGTCGCCGGGGGGGAGCAGCGGCGGCGGCGG
CGGCGGCGGCGGTGTATCCGTGCCAGACACTAGAGTACCACAGCAACCGC
GTGGTGGAAGTCCGGCTTTCGGCCCCCAAGATATCTGGCCGCCTGGGAGA
AGCGGTGTGGACGACTTGCTCGGGAACCTTCACGACAGACTCAACAGTGA
GTCCCCTTTTCATGGGCACATCGTAGCATGA
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