mRNA_Ecto-sp8_S_contig10379.620.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10379.620.1
Unique NamemRNA_Ecto-sp8_S_contig10379.620.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: D8LHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 7.180e-25
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 YQEMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            Y +MMF+KFGVPAEFMSKDAVLACFSIGRTTASLVDVGGD  VVTPVYDG
Sbjct:    3 YTDMMFDKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDIAVVTPVYDG 52
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: D8LHI8_ECTSI (Protein binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.100e-23
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 YQEMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            Y E+MFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDS VVTPVYDG
Sbjct:  173 YTEIMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSAVVTPVYDG 222
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: A0A6H5KHN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 7.040e-20
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 YQEMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            Y EMMFE+FGVPAEF+SKD VL CFSIGRTTASLVDVGGDS V TPV+DG
Sbjct:  229 YTEMMFEEFGVPAEFVSKDGVLPCFSIGRTTASLVDVGGDSAVATPVFDG 278
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: D8LHJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.870e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 YQEMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGG 117
            Y EM+ E+FGVPAEFMSKDAVLACFSIGRTTASLVDVGG
Sbjct:    3 YTEMILEEFGVPAEFMSKDAVLACFSIGRTTASLVDVGG 41
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: A0A835Z589_9STRA (Actin family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z589_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.390e-13
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 QEMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            QE+MFEKF VPA FM +DAVL+CFS+G+TT + VDVGG +TV TPV DG
Sbjct:  109 QELMFEKFDVPALFMGRDAVLSCFSLGKTTGTAVDVGGHTTV-TPVTDG 156
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: B8CAA7_THAPS (Actin related protein centractin-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAA7_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 4.740e-11
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    7 EMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            E++FE   +PA F  +DAV AC+++GRTTA++VDVG  ST+VTPVY+G
Sbjct:   73 EILFETHNLPATFFLRDAVAACYAVGRTTATVVDVGYSSTMVTPVYEG 120
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: A0A7S0VUY7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUY7_9CRYP)

HSP 1 Score: 64.3 bits (155), Expect = 6.700e-11
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    7 EMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            E+MFEK+ VPA F+SK+AVL+ FS GR+TA ++D GG ST V+PV+DG
Sbjct:   36 EIMFEKYKVPAVFVSKNAVLSAFSCGRSTAVVLDSGGGSTCVSPVHDG 83
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: A0A7S3HMC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMC5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.300e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    7 EMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            E MFEK+ VPA F+SKDAVLA ++ G+T   ++DVG   TVVTPV DG
Sbjct:   52 ETMFEKYSVPAFFLSKDAVLASYACGKTGGLVIDVGASGTVVTPVQDG 99
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: A0A7S3UN21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UN21_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    7 EMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            E+ FEK+ VPA F+SKDAVL+CF+ GRTT  + DVG +   VTPV DG
Sbjct:   99 EIWFEKYDVPALFISKDAVLSCFAAGRTTGLVADVGAELATVTPVSDG 146
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Match: A0A2H2ICF7_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2ICF7_CAEJA)

HSP 1 Score: 62.8 bits (151), Expect = 3.210e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    7 EMMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 150
            E+MFEKF VPA ++SK+AVL+CF+ GRT   +VD G   T V PVYDG
Sbjct:  144 ELMFEKFQVPAYYLSKNAVLSCFAQGRTHGLMVDSGATQTSVVPVYDG 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10379.620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHJ0_ECTSI7.180e-2590.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHI8_ECTSI9.100e-2394.00Protein binding protein, putative n=2 Tax=Ectocarp... [more]
A0A6H5KHN4_9PHAE7.040e-2084.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHJ1_ECTSI2.870e-1689.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z589_9STRA6.390e-1369.39Actin family n=1 Tax=Tribonema minus TaxID=303371 ... [more]
B8CAA7_THAPS4.740e-1158.33Actin related protein centractin-like protein n=1 ... [more]
A0A7S0VUY7_9CRYP6.700e-1162.50Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3HMC5_9STRA1.300e-1060.42Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3UN21_HETAK1.970e-1060.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2H2ICF7_CAEJA3.210e-1060.42Uncharacterized protein n=1 Tax=Caenorhabditis jap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10379contigEcto-sp8_S_contig10379:6682..6834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.1
Seed ortholog evalue9.3e-18
Seed eggNOG ortholog2880.D8LHI8
Preferred nameACTL6A
Model size153
KEGG koko:K05692,ko:K11340,ko:K11400,ko:K11652,ko:K11767
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000123,GO:0000228,GO:0000278,GO:0000281,GO:0000785,GO:0000790,GO:0000812,GO:0000902,GO:0000904,GO:0000910,GO:0001654,GO:0003407,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016358,GO:0016514,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016586,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031011,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031493,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032984,GO:0032986,GO:0032989,GO:0032990,GO:0032991,GO:0033202,GO:0033554,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035060,GO:0035267,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042393,GO:0042766,GO:0043010,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051716,GO:0060041,GO:0060147,GO:0060148,GO:0060255,GO:0060303,GO:0060964,GO:0060966,GO:0060968,GO:0061640,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070646,GO:0070647,GO:0070925,GO:0070983,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097346,GO:0097458,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1904949,GO:1990234,GO:2000112,GO:2000637,GO:2001141
Exons1
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0679@2759
Cds size144
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.1713378-UTR-Ecto-sp8_S_contig10379:6681..66901681143137.1713378-UTR-Ecto-sp8_S_contig10379:6681..6690Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10379 6682..6690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.1884556-CDS-Ecto-sp8_S_contig10379:6690..68341681143137.1884556-CDS-Ecto-sp8_S_contig10379:6690..6834Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10379 6691..6834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10379.620.1prot_Ecto-sp8_S_contig10379.620.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10379 6691..6834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10379.620.1

>prot_Ecto-sp8_S_contig10379.620.1 ID=prot_Ecto-sp8_S_contig10379.620.1|Name=mRNA_Ecto-sp8_S_contig10379.620.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
MMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG*
back to top

mRNA from alignment at Ecto-sp8_S_contig10379:6682..6834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10379.620.1 ID=mRNA_Ecto-sp8_S_contig10379.620.1|Name=mRNA_Ecto-sp8_S_contig10379.620.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10379:6682..6834+ (Ectocarpus species8 EcLAC_412)
TATCAGGAAATGATGTTCGAGAAGTTCGGCGTTCCCGCGGAGTTCATGTC
GAAAGACGCAGTGCTTGCGTGCTTCTCTATAGGTCGGACGACGGCGTCGC
TGGTAGACGTGGGGGGGGACAGCACCGTAGTGACACCGGTTTACGACGGG
TGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10379:6682..6834+

>mRNA_Ecto-sp8_S_contig10379.620.1 ID=mRNA_Ecto-sp8_S_contig10379.620.1|Name=mRNA_Ecto-sp8_S_contig10379.620.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10379:6682..6834+ (Ectocarpus species8 EcLAC_412)
ATGATGTTCGAGAAGTTCGGCGTTCCCGCGGAGTTCATGTCGAAAGACGC
AGTGCTTGCGTGCTTCTCTATAGGTCGGACGACGGCGTCGCTGGTAGACG
TGGGGGGGGACAGCACCGTAGTGACACCGGTTTACGACGGGTGA
back to top