mRNA_Ecto-sp8_S_contig10377.616.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10377.616.1
Unique NamemRNA_Ecto-sp8_S_contig10377.616.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10377.616.1 vs. uniprot
Match: D7G654_ECTSI (UDP-glucose:glycoprotein glucosyltransferase, C-terminal, family GT24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G654_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.430e-31
Identity = 74/87 (85.06%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 KSPRFLLSVTRAAMSSPGPDGEAKNAADTVETLAREAGLSPSLRAAVAKAAAGDEASSSARRRRMARLARSVAGTAKGESCALVNGR 261
            KSPRFLLSVTRAAMSSPGPDGEAKNAADTVETLAREAGLSPSLRAAVAKAA            RMARLARSVAGTA+GESCALVNGR
Sbjct:  163 KSPRFLLSVTRAAMSSPGPDGEAKNAADTVETLAREAGLSPSLRAAVAKAAXXXXXXXXXXXXRMARLARSVAGTARGESCALVNGR 249
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BLAST of mRNA_Ecto-sp8_S_contig10377.616.1 vs. uniprot
Match: A0A6H5L0Y3_9PHAE (GT24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.930e-26
Identity = 66/87 (75.86%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    1 KSPRFLLSVTRAAMSSPGPDGEAKNAADTVETLAREAGLSPSLRAAVAKAAAGDEASSSARRRRMARLARSVAGTAKGESCALVNGR 261
            KSPRFLLSVTRAA SSPGPDG+  +AA+ VETLAREAGLSPSLRAAV KAA            RMARLAR VAGTAKGESCALVNGR
Sbjct:  139 KSPRFLLSVTRAATSSPGPDGKGNSAANMVETLAREAGLSPSLRAAVTKAAXXXXXXXXXXXXRMARLARRVAGTAKGESCALVNGR 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10377.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G654_ECTSI1.430e-3185.06UDP-glucose:glycoprotein glucosyltransferase, C-te... [more]
A0A6H5L0Y3_9PHAE4.930e-2675.86GT24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10377contigEcto-sp8_S_contig10377:90..706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score126.7
Seed ortholog evalue5.2e-27
Seed eggNOG ortholog2880.D7G654
Model size263
KEGG koko:K11718
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.UDP-glucose:glycoprotein glucosyltransferase activity
EggNOG OGsKOG1879@1,KOG1879@2759
Cds size261
COG Functional cat.M
CAZyGT24
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143136.880737-CDS-Ecto-sp8_S_contig10377:89..2541681143136.880737-CDS-Ecto-sp8_S_contig10377:89..254Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10377 90..254 +
1681143136.9014702-CDS-Ecto-sp8_S_contig10377:608..7041681143136.9014702-CDS-Ecto-sp8_S_contig10377:608..704Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10377 609..704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10377.616.1prot_Ecto-sp8_S_contig10377.616.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10377 90..704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10377.616.1

>prot_Ecto-sp8_S_contig10377.616.1 ID=prot_Ecto-sp8_S_contig10377.616.1|Name=mRNA_Ecto-sp8_S_contig10377.616.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=87bp
KSPRFLLSVTRAAMSSPGPDGEAKNAADTVETLAREAGLSPSLRAAVAKA
AAGDEASSSARRRRMARLARSVAGTAKGESCALVNGR
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mRNA from alignment at Ecto-sp8_S_contig10377:90..706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10377.616.1 ID=mRNA_Ecto-sp8_S_contig10377.616.1|Name=mRNA_Ecto-sp8_S_contig10377.616.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=617bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10377:90..706+ (Ectocarpus species8 EcLAC_412)
AAGTCTCCGAGGTTCCTGCTCTCGGTGACCAGGGCCGCAATGTCGTCCCC
CGGCCCCGACGGCGAAGCAAAAAACGCCGCAGACACGGTGGAAACCCTGG
CGAGAGAGGCCGGCCTCTCCCCTTCCCTTCGAGCGGCCGTCGCCAAGGCT
GCCGCCGGGGACGAGGTAAGGATTAGAGGGGCCGTAGTTGCTGTTCGCCC
ACATCACCGTCTTGTGGGGAGCGTATGAGTTTCAAGCTTTTTGGCAGGCA
CGATTCCAGGTCCCAGAGGGAGTATTTGTTGGTCGTGTAGCCCCCCCGAT
CGGGTCTGCTCAGTTGAGAGGGCAAATGGTTTTGTGCGGTAGGTTGGTGG
GATTTCGTGAGTGGCGATTGATAGATGGGGTGGCCACCTGCAGCTAAGAT
TGAAGCATCAAACACGCGTGCAGATGTACCATCATTTTGCAAAACGATTT
GACGACATGGTGGATAGTAGCCCTTACCTTTCTGCTGCTGGTGCTGCTGG
TGCTGCTGGTGCTGCTCAGGCATCATCGTCTGCGAGGAGGAGAAGAATGG
CGAGGCTCGCGAGGAGCGTTGCCGGCACCGCGAAGGGGGAGTCCTGCGCT
CTGGTGAACGGAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10377:90..706+

>mRNA_Ecto-sp8_S_contig10377.616.1 ID=mRNA_Ecto-sp8_S_contig10377.616.1|Name=mRNA_Ecto-sp8_S_contig10377.616.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10377:90..706+ (Ectocarpus species8 EcLAC_412)
AAGTCTCCGAGGTTCCTGCTCTCGGTGACCAGGGCCGCAATGTCGTCCCC
CGGCCCCGACGGCGAAGCAAAAAACGCCGCAGACACGGTGGAAACCCTGG
CGAGAGAGGCCGGCCTCTCCCCTTCCCTTCGAGCGGCCGTCGCCAAGGCT
GCCGCCGGGGACGAGGCATCATCGTCTGCGAGGAGGAGAAGAATGGCGAG
GCTCGCGAGGAGCGTTGCCGGCACCGCGAAGGGGGAGTCCTGCGCTCTGG
TGAACGGAAGA
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