mRNA_Ecto-sp8_S_contig1037.607.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1037.607.1
Unique NamemRNA_Ecto-sp8_S_contig1037.607.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1037.607.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 1.230e-129
Identity = 188/191 (98.43%), Postives = 190/191 (99.48%), Query Frame = 1 
Query:    1 MVKFSEDSPFLQDDGDGQPSAICSQHVRSLDLLKAIVQVDTILAGFLVLSVVGKDHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDNEAGPDALGSSRLSATRPIA 573
            MVKFSEDSPFLQDDGDGQPSAICSQH+RSLDLLKAIVQVDTILAGFLVLSVVGK+HEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDNEAG DALGSSRLSATRPIA
Sbjct:    1 MVKFSEDSPFLQDDGDGQPSAICSQHIRSLDLLKAIVQVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDNEAGLDALGSSRLSATRPIA 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1037.607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD8_ECTSI1.230e-12998.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1037contigEcto-sp8_S_contig1037:10132..11928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size576
Hectar predicted targeting categoryother localisation
Exons3
Cds size576
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143136.275918-CDS-Ecto-sp8_S_contig1037:10131..105061681143136.275918-CDS-Ecto-sp8_S_contig1037:10131..10506Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1037 10132..10506 -
1681143136.2870643-CDS-Ecto-sp8_S_contig1037:11084..111711681143136.2870643-CDS-Ecto-sp8_S_contig1037:11084..11171Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1037 11085..11171 -
1681143136.2970483-CDS-Ecto-sp8_S_contig1037:11814..119281681143136.2970483-CDS-Ecto-sp8_S_contig1037:11814..11928Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1037 11815..11928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1037.607.1prot_Ecto-sp8_S_contig1037.607.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1037 10132..11928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1037.607.1

>prot_Ecto-sp8_S_contig1037.607.1 ID=prot_Ecto-sp8_S_contig1037.607.1|Name=mRNA_Ecto-sp8_S_contig1037.607.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=192bp
MVKFSEDSPFLQDDGDGQPSAICSQHVRSLDLLKAIVQVDTILAGFLVLS
VVGKDHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAW
YDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMC
PMALAGPTATLQMILHKFERDNEAGPDALGSSRLSATRPIA*
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mRNA from alignment at Ecto-sp8_S_contig1037:10132..11928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1037.607.1 ID=mRNA_Ecto-sp8_S_contig1037.607.1|Name=mRNA_Ecto-sp8_S_contig1037.607.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1797bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1037:10132..11928- (Ectocarpus species8 EcLAC_412)
ATGGTGAAGTTTTCGGAGGACAGTCCTTTCCTGCAGGACGACGGAGACGG
GCAACCGAGTGCCATCTGCTCGCAGCACGTCAGGAGCTTGGACCTGCTCA
AGGCGATCGTTCAGGTTAGAGCTTTTTTTTTTTTTTTTCCAAGGCCGTTT
TCTACATTTTGCTGGTCCCCGCCGTCGAGCTTGTCCGCTGGTTTCTCGTT
CCATATTTTACCTCTGCCGGAGTGTTCGGAACACCAACTCTGCGCCGTTT
TTGTCCCACGCAATCGAGTTCCACGAATGCAGCTTAGTGTGTGCGTGTAG
TGATAAGAATGCCCGCTTCTAAGCCGTAGCTCGGTGACGCCAAGAATCTG
AAGCCGGGTTCGGTACAACCAGAAACCAACTGACCGAACTGCAAGAGAGG
TGGACTACAGCCTCAAACAATCTTCATGAGCCAACTATTCAACACCCAAA
GGCTACTCGGGCCAGTAGGGGAGAGAATCTGCGACGGTTACGATCACCGC
TTTAACTGCCCAAAGGGTGCGTCGTGCTCATGTCTCACGCGGTGGCCGAC
ATTTTGGCTATAGAGCAAAGTCTGCGCTGGCAGCGCCAAGCCTCCGCGGA
AAGGCTTGCTTGTTGCGGACATGGGAAACATGTTGTGCGTGGGTGTGCTC
GGACTCCACTGCTGCAACGAAAGGGGCCTTATTTGTATGCTTGCGGTGTG
ATCACCCGGGCTGTTCGCTTCTCTCCGTGGCACTGCTGCGCGGCGCCTCA
CCCCCAGGTTGACACCATTCTCGCTGGATTTCTCGTGCTATCCGTGGTGG
GCAAGGACCATGAGCAGATCACGAAAGACGAGGAGAAGGTTCAGGTCAGA
AAATTTGAGAGTATTTTTGCTCCATTTGTGCTTTGCTGAGGAGGCACGGT
TCCGTTTTTGCCAGACCCATGGACAAGGGTCGGCGGTGGTTTCCTTGTTG
AAACTGCGGAGGGGAAAACTGGGTCTGCGCAGCCATTGTCGCTGTTCCCG
GTGCGTAGCACTGAACACGGGTACGCCGGCGGTTTACGACCGTTTCAACA
ACATCCGAAATCTAGAGCGACATGTAGTACAGGGTGCCCGATGTTGAAGA
CGTAGCTCTTCGTCGTCACCTTCATCCTCTTCTTTGAGAAGATATGACAA
CGCCAATGGGGATATGGGGAGAAGAGCGTTCTAAAGGCAGTTCATTTTCG
CGAGAAAAGGCCGCACCGGGCGGTCAATATAGGCAAACAGCACAACCTTT
TCTACCCATATTCTGTTCACAAAGAGCGCGCGCTAGTGTCCGAATCGTGT
CTTTCATGTCACCGTTACCCTGTCGAGAGAGGGGCGTCAAACCAATCGCC
AATTGACGAGCCATGCACCAACGTAAGAGTGCCCCCCGCCCCCTTCACCT
GTGTAACTCTCGGATCCCCCAGATGGTGCTGCAGGTTGTGACCGCATCGG
TGTTCCTGGCGGCGATCGCGCACACCGTGGTGCTCATGGTCTGCACCGGT
TGGAGGTATACCCTGGCCTGGTACGACCCCCTGTTTCCTGCGGGGTTCTC
GGCCGTAGGCATGTTCCTGCTGTACCTGACGATCGCGGACGCAATCCTGA
TTCGGCTGCGACCCCAGGAAGACCTGCACACGGTGGGGTACTGGATGATC
ATCATCTTCGGCCTGATGTGCCCAATGGCCTTGGCGGGTCCTACTGCTAC
GCTGCAGATGATTCTGCACAAGTTTGAGAGGGACAACGAGGCGGGCCCTG
ATGCGTTGGGTAGCTCGAGGCTGTCGGCAACCCGCCCCATTGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1037:10132..11928-

>mRNA_Ecto-sp8_S_contig1037.607.1 ID=mRNA_Ecto-sp8_S_contig1037.607.1|Name=mRNA_Ecto-sp8_S_contig1037.607.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1037:10132..11928- (Ectocarpus species8 EcLAC_412)
ATGGTGAAGTTTTCGGAGGACAGTCCTTTCCTGCAGGACGACGGAGACGG
GCAACCGAGTGCCATCTGCTCGCAGCACGTCAGGAGCTTGGACCTGCTCA
AGGCGATCGTTCAGGTTGACACCATTCTCGCTGGATTTCTCGTGCTATCC
GTGGTGGGCAAGGACCATGAGCAGATCACGAAAGACGAGGAGAAGGTTCA
GATGGTGCTGCAGGTTGTGACCGCATCGGTGTTCCTGGCGGCGATCGCGC
ACACCGTGGTGCTCATGGTCTGCACCGGTTGGAGGTATACCCTGGCCTGG
TACGACCCCCTGTTTCCTGCGGGGTTCTCGGCCGTAGGCATGTTCCTGCT
GTACCTGACGATCGCGGACGCAATCCTGATTCGGCTGCGACCCCAGGAAG
ACCTGCACACGGTGGGGTACTGGATGATCATCATCTTCGGCCTGATGTGC
CCAATGGCCTTGGCGGGTCCTACTGCTACGCTGCAGATGATTCTGCACAA
GTTTGAGAGGGACAACGAGGCGGGCCCTGATGCGTTGGGTAGCTCGAGGC
TGTCGGCAACCCGCCCCATTGCGTAG
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