mRNA_Ecto-sp8_S_contig10354.577.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10354.577.1
Unique NamemRNA_Ecto-sp8_S_contig10354.577.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: D7FZ93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ93_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.790e-23
Identity = 74/143 (51.75%), Postives = 86/143 (60.14%), Query Frame = 1 
Query:    1 MASGADPNLRDRRKSSPLHRAAEAGHHGVLGILLLKKXXXXXXXXXXXXXXXXXXXXXXXTLCISELLLGNADKDVVDAVRVLLEAGADVDAKTTDDVCETPLHVAVCRRIASIGTIXXXXXXXXXXXVRDGDELTPLHVACM 429
            M + ADPNLRD +   PLH AAEAGHH + G+LL                          T    E  L  A   V+DAVR LL+AGADV+AK  D+   TPLHVAV RR++SI TIXXXXXXXXXXXVR+  + TPLHVACM
Sbjct:    1 MMAAADPNLRDGKAYGPLHLAAEAGHHRLTGVLLRN------------------GARVDATNDFQETPLYLAASRVIDAVRALLDAGADVNAKAGDNGDRTPLHVAVDRRMSSICTIXXXXXXXXXXXVRNDYDHTPLHVACM 125
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.770e-15
Identity = 81/164 (49.39%), Postives = 88/164 (53.66%), Query Frame = 1 
Query:    1 MASGADPNLRDRRKSSPLHRAAEAGHHGVLGILLLKKXXXXXXXXXXXXXXXXXXXXXXXTLCISELLLGNADKDVVDAVRVLLEA----------------------GADVDAKTTDDVCETPLHVAVCRRIASIGTIXXXXXXXXXXXVRDGDELTPLHVAC 426
            M +GADPNLRDR   SPLH AAEAGH  ++GI     XXXXXXXXXXXXXXXXXXXXX    CISELL+G                                      GADVDA+ T   C TPLHVAV RR+ASIGTI           V D  + TPLH AC
Sbjct:   68 MIAGADPNLRDRMNRSPLHLAAEAGHRHIIGIXXXXXXXXXXXXXXXXXXXXXXXXXXAP--CISELLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYPGADVDAEATGSDCSTPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRAC 229
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: A0A6H5JZY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.180e-15
Identity = 61/162 (37.65%), Postives = 73/162 (45.06%), Query Frame = 1 
Query:    1 MASGADPNLRDRRKSSPLHRAAEAGHHGVLGI--LLLKKXXXXXXXXXXXXXXXXXXXXXXXTLCISELLLGNADKDVVDA------------------VRVLLEAGADVDAKTTDDVCETPLHVAVCRRIASIGTIXXXXXXXXXXXVRDGDELTPLHVAC 426
            M + ADPN RD+   SPLH AA+AG+  V     +LL +                        L ISEL+LG ADKDV D                     V+   G   D + T D C TPLHVAV RRIASIGT             R+ ++LTPLHVAC
Sbjct:   48 MVAAADPNPRDQVGFSPLHIAAKAGYGRVDAYTRILLGQGAQAHAETVFQDIPLHLATSQGHALGISELVLGGADKDVDDGNGSEVNGSDYQGHTALHNATVIEGPGPGQDDQATGDRCYTPLHVAVDRRIASIGTTRAVLERGANVNARNDNDLTPLHVAC 209
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.220e-12
Identity = 45/80 (56.25%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:  190 ISELLLGNADKDVVDAVRVLLEAGADVDAKTTDDV-CETPLHVAVCRRIASIGTIXXXXXXXXXXXVRDGDELTPLHVAC 426
            I+E +L N D      VRVLLEAGADVDAKTT D  C TPLH AV RRIA IG I            RD  + TPLHVAC
Sbjct:   30 INEPVLDNGD-----TVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVAC 104
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.440e-12
Identity = 79/220 (35.91%), Postives = 92/220 (41.82%), Query Frame = 1 
Query:    1 MASGADPNLRDR---------------RKSSPLHR---AAEAGHHGVLGILLLKKXXXXXXXXXXXXXXXXXXXXXXXTLCISELLLGN----------------------------------------------ADKDVV--------------DAVRVLLEAGADVDAKTTDDVCETPLHVAVCRRIASIGTIXXXXXXXXXXXVRDGDELTPLHVAC 426
            M +GADP LRDR                 +S + R   AA AGHH V+G LLL +                        LC+SELLLG                                                DKD +              DAVR LL  GADV+AKTTD +C +PLH+AV RRIAS G IXXXXXXXXXXX   GD+  PLH+AC
Sbjct:  105 MIAGADPTLRDRGDDTRWFKEMDTRIFNMTSVIERIWVAAVAGHHRVIGSLLLNRADVHAKTASQSTPLHLAASEGR-ALCLSELLLGANNHLEAVQELLAAGANCGLRCMLTNGSHSSLDMAAGRGHADVLTALLDKDNIFFAMSVDGPVHDNGDAVRALLGVGADVNAKTTDSICASPLHLAVDRRIASDGMIXXXXXXXXXXXXXXGDDNKPLHLAC 323
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.090e-11
Identity = 60/114 (52.63%), Postives = 72/114 (63.16%), Query Frame = 1 
Query:    1 MASGADPNLRDRRKSSPLHRAAEAGHHGVLGILLLKKXXXXXXXXXXXXXXXXXXXXXXXTLCISELLLGNADKDVVDAVRVLLEAGADVDAKTTDDVCETPLHVAVCRRIASI 342
            M  GADPN+RDRRK SPLH AA AGHH V+G+LLL +          XXXXXXXXXXXX  LCISELLLG      ++AV+ LL AGA+   +T      +PL +A  R  A +
Sbjct:  113 MIDGADPNVRDRRKRSPLHLAAVAGHHRVVGMLLLNRACVHAKTASQXXXXXXXXXXXX-ALCISELLLGANSH--LEAVQELLAAGANYSLRTNGS--RSPLEIAANRGQADV 221
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.860e-11
Identity = 39/70 (55.71%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  220 KDVVDAVRVLLEAGADVDAKTTDDVCE-TPLHVAVCRRIASIGTIXXXXXXXXXXXVRDGDELTPLHVAC 426
            +D  DAVRVLL AGADV AKTTDD     PLH+AVC R+ S GTI           VRD ++ TPLH AC
Sbjct:  292 RDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEAC 361
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BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 7.890e-10
Identity = 48/79 (60.76%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 MASGADPNLRDRRKSSPLHRAAEAGHHGVLGILLLKKXXXXXXXXXXXXXXXXXXXXXXXT-LCISELLLGNADKDVVD 234
            M +GADPNL +    SPLH AAEAGHH V+GILLL+K              XXXXXXXXX  LCISELL+G ADKDV D
Sbjct:  131 MMAGADPNLGNVDGDSPLHLAAEAGHHRVIGILLLRKEAQSADPMNLFLETXXXXXXXXXXXLCISELLMGGADKDVTD 209
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: D8LQL7_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL7_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.990e-7
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 MASGADPNLRDRRKSSPLHRAAEAGHHGVLGILLLKK 111
            M +GADPNLRD RK SPLH AAEAGHH V+G LLL K
Sbjct:   71 MIAGADPNLRDGRKRSPLHLAAEAGHHRVIGSLLLNK 107
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Match: A0A6H5KVD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.190e-6
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:  223 DVVDAVRVLLEAGADVDAKTTDDVCETPLHVAVCRRIASIGTIXXXXXXXXXXXVRDGDELTPLHVAC 426
            D  +AVRVLLEAGAD++AKT D    TP+H++ C R ++ G I XXXXXXXXXX  + D   PLH+AC
Sbjct:   43 DKGNAVRVLLEAGADIEAKTKD-CSSTPVHLSACSRSSTSGAILXXXXXXXXXXAEEVDRCPPLHLAC 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10354.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FZ93_ECTSI4.790e-2351.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTL5_ECTSI1.770e-1549.39MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5JZY3_9PHAE2.180e-1537.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6K9_9PHAE3.220e-1256.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7E1_9PHAE6.440e-1235.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L812_9PHAE1.090e-1152.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI3.860e-1155.71MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D7FZ92_ECTSI7.890e-1060.76Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
D8LQL7_ECTSI1.990e-775.68Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
A0A6H5KVD2_9PHAE1.190e-657.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10354contigEcto-sp8_S_contig10354:705..1403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score98.2
Seed ortholog evalue3.3e-18
Seed eggNOG ortholog2880.D7FZ93
Preferred nameILK
Model size429
KEGG koko:K06272
KEGG Pathwayko03320,ko04360,ko04510,ko05100,ko05213,map03320,map04360,map04510,map05100,map05213
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000165,GO:0000902,GO:0000904,GO:0001558,GO:0001655,GO:0001657,GO:0001658,GO:0001667,GO:0001763,GO:0001822,GO:0001823,GO:0001932,GO:0001933,GO:0001934,GO:0001952,GO:0001954,GO:0002009,GO:0002165,GO:0003006,GO:0003007,GO:0003151,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0005911,GO:0005912,GO:0005924,GO:0005925,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006937,GO:0006940,GO:0006996,GO:0007010,GO:0007016,GO:0007049,GO:0007050,GO:0007154,GO:0007155,GO:0007160,GO:0007163,GO:0007165,GO:0007166,GO:0007229,GO:0007272,GO:0007275,GO:0007399,GO:0007422,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007507,GO:0007517,GO:0007548,GO:0007552,GO:0007560,GO:0007568,GO:0007569,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008285,GO:0008305,GO:0008361,GO:0008366,GO:0008406,GO:0008587,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009925,GO:0009966,GO:0009967,GO:0009987,GO:0010001,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010656,GO:0010660,GO:0010662,GO:0010664,GO:0010665,GO:0010667,GO:0010720,GO:0010761,GO:0010769,GO:0010770,GO:0010810,GO:0010811,GO:0010927,GO:0010941,GO:0010975,GO:0010976,GO:0014037,GO:0014044,GO:0014910,GO:0014912,GO:0016020,GO:0016021,GO:0016043,GO:0016203,GO:0016301,GO:0016310,GO:0016323,GO:0016477,GO:0016740,GO:0016772,GO:0016773,GO:0017124,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0021675,GO:0021782,GO:0022008,GO:0022011,GO:0022402,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030016,GO:0030017,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030054,GO:0030055,GO:0030111,GO:0030154,GO:0030155,GO:0030177,GO:0030182,GO:0030239,GO:0030278,GO:0030307,GO:0030334,GO:0030335,GO:0030336,GO:0030424,GO:0030425,GO:0030510,GO:0030513,GO:0030516,GO:0030674,GO:0031032,GO:0031175,GO:0031224,GO:0031226,GO:0031252,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031430,GO:0031589,GO:0031672,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032288,GO:0032292,GO:0032501,GO:0032502,GO:0032507,GO:0032535,GO:0032879,GO:0032880,GO:0032956,GO:0032970,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033209,GO:0033267,GO:0033673,GO:0033674,GO:0034097,GO:0034329,GO:0034330,GO:0034446,GO:0034612,GO:0034613,GO:0035088,GO:0035107,GO:0035112,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035262,GO:0035295,GO:0035556,GO:0036211,GO:0036477,GO:0040008,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0040035,GO:0042063,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042552,GO:0042692,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043034,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043235,GO:0043292,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043491,GO:0043519,GO:0043523,GO:0043524,GO:0043549,GO:0043679,GO:0043900,GO:0043902,GO:0043933,GO:0044057,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045137,GO:0045178,GO:0045185,GO:0045197,GO:0045202,GO:0045595,GO:0045597,GO:0045661,GO:0045663,GO:0045664,GO:0045666,GO:0045667,GO:0045669,GO:0045773,GO:0045778,GO:0045785,GO:0045786,GO:0045859,GO:0045860,GO:0045893,GO:0045927,GO:0045933,GO:0045935,GO:0045936,GO:0045937,GO:0045987,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048646,GO:0048660,GO:0048662,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048754,GO:0048806,GO:0048812,GO:0048814,GO:0048815,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050839,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051235,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051259,GO:0051270,GO:0051271,GO:0051272,GO:0051291,GO:0051338,GO:0051347,GO:0051348,GO:0051493,GO:0051495,GO:0051641,GO:0051651,GO:0051674,GO:0051716,GO:0051726,GO:0051896,GO:0051897,GO:0051960,GO:0051962,GO:0055001,GO:0055002,GO:0055120,GO:0060090,GO:0060255,GO:0060278,GO:0060279,GO:0060284,GO:0060297,GO:0060298,GO:0060341,GO:0060429,GO:0060538,GO:0060548,GO:0060562,GO:0060675,GO:0060828,GO:0060993,GO:0061061,GO:0061138,GO:0061245,GO:0061326,GO:0061333,GO:0061387,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070161,GO:0070201,GO:0070727,GO:0070887,GO:0070925,GO:0071310,GO:0071345,GO:0071356,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072163,GO:0072164,GO:0072171,GO:0072359,GO:0080090,GO:0090066,GO:0090092,GO:0090100,GO:0090257,GO:0090263,GO:0090287,GO:0097435,GO:0097447,GO:0097458,GO:0098590,GO:0098636,GO:0098793,GO:0098796,GO:0098797,GO:0098802,GO:0099080,GO:0099081,GO:0099512,GO:0110020,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900006,GO:1901214,GO:1901215,GO:1901222,GO:1901224,GO:1901564,GO:1902115,GO:1902117,GO:1902531,GO:1902533,GO:1902680,GO:1902903,GO:1902905,GO:1903354,GO:1903356,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904901,GO:1904951,GO:2000026,GO:2000112,GO:2000145,GO:2000146,GO:2000147,GO:2000177,GO:2000178,GO:2000241,GO:2000243,GO:2001141
Exons2
EggNOG free text desc.integrin-mediated signaling pathway
EggNOG OGsCOG0666@1,KOG0195@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-06_008990.1
EC2.7.11.1
Cds size429
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.3886828-CDS-Ecto-sp8_S_contig10354:704..8981681143134.3886828-CDS-Ecto-sp8_S_contig10354:704..898Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10354 705..898 -
1681143134.4041915-CDS-Ecto-sp8_S_contig10354:1168..14031681143134.4041915-CDS-Ecto-sp8_S_contig10354:1168..1403Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10354 1169..1403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10354.577.1prot_Ecto-sp8_S_contig10354.577.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10354 705..1403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10354.577.1

>prot_Ecto-sp8_S_contig10354.577.1 ID=prot_Ecto-sp8_S_contig10354.577.1|Name=mRNA_Ecto-sp8_S_contig10354.577.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=143bp
MASGADPNLRDRRKSSPLHRAAEAGHHGVLGILLLKKGADMNATNDLQKT
PLHLAASKGHTLCISELLLGNADKDVVDAVRVLLEAGADVDAKTTDDVCE
TPLHVAVCRRIASIGTIRALLEGGANVNVRDGDELTPLHVACM
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mRNA from alignment at Ecto-sp8_S_contig10354:705..1403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10354.577.1 ID=mRNA_Ecto-sp8_S_contig10354.577.1|Name=mRNA_Ecto-sp8_S_contig10354.577.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=699bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10354:705..1403- (Ectocarpus species8 EcLAC_412)
ATGGCTTCTGGAGCAGACCCGAATCTGCGCGATCGGAGGAAAAGTAGTCC
GCTCCACCGAGCAGCCGAAGCTGGGCATCACGGCGTTTTAGGTATCCTTC
TTCTGAAGAAAGGGGCCGACATGAACGCAACGAATGATCTCCAGAAGACT
CCTCTTCACCTCGCTGCTTCCAAGGGCCATACGCTGTGCATCTCTGAGCT
TTTATTGGGCAATGCAGACAAGGACGTGGTCGATGGTAACGGTGAAACGC
CACTGTTCAAGGCGGCAGGAAACCGCCACCTCGAGGCTGTCGAAAAGCTT
CTAGCTGCCGGGGCCAACCGCGGTATTCGTGCCAACAACAACTATTCTCC
ATTCGAGATAGCTGCAAACAGCGGTTACGAGACCATCGTAAAGGCTTTCC
TTGACGCAGACGGTACTGAAGTCAACACCACCTATGATTGCGGATTCACA
GCCCTACACTGCTGTGTTTCTGCATTTGAAGGACCTGTCGGTGACAACGG
CGAAGCTGTCCGTGTACTATTGGAAGCCGGTGCTGATGTTGACGCCAAGA
CCACCGACGATGTTTGCGAAACGCCTCTCCATGTTGCCGTTTGTCGTCGG
ATAGCATCGATCGGCACCATCCGCGCCCTGTTGGAGGGAGGGGCCAATGT
CAATGTGCGTGACGGAGACGAGCTGACGCCACTGCATGTCGCTTGCATG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10354:705..1403-

>mRNA_Ecto-sp8_S_contig10354.577.1 ID=mRNA_Ecto-sp8_S_contig10354.577.1|Name=mRNA_Ecto-sp8_S_contig10354.577.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10354:705..1403- (Ectocarpus species8 EcLAC_412)
ATGGCTTCTGGAGCAGACCCGAATCTGCGCGATCGGAGGAAAAGTAGTCC
GCTCCACCGAGCAGCCGAAGCTGGGCATCACGGCGTTTTAGGTATCCTTC
TTCTGAAGAAAGGGGCCGACATGAACGCAACGAATGATCTCCAGAAGACT
CCTCTTCACCTCGCTGCTTCCAAGGGCCATACGCTGTGCATCTCTGAGCT
TTTATTGGGCAATGCAGACAAGGACGTGGTCGATGCTGTCCGTGTACTAT
TGGAAGCCGGTGCTGATGTTGACGCCAAGACCACCGACGATGTTTGCGAA
ACGCCTCTCCATGTTGCCGTTTGTCGTCGGATAGCATCGATCGGCACCAT
CCGCGCCCTGTTGGAGGGAGGGGCCAATGTCAATGTGCGTGACGGAGACG
AGCTGACGCCACTGCATGTCGCTTGCATG
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