mRNA_Ecto-sp8_S_contig10352.574.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10352.574.1
Unique NamemRNA_Ecto-sp8_S_contig10352.574.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: D7FM81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM81_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 8.350e-69
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 1 
Query:    1 DTCSLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAY 339
            D  SLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAY
Sbjct:    3 DVYSLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAY 115
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: A0A836C8Z1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.430e-21
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    7 CSLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAY 339
            C  D +E+++  +AL     E   V   P L  SELKGIKLR    D   L LL H++EGRVLLTD+DG+YNDF++EA ++ GGN+ +A++ V T+  +LA+E +V ALAY
Sbjct:   15 CGTDPRERKKTRRALAARFREQAVVGEQP-LTVSELKGIKLRGPKTD---LALLVHFSEGRVLLTDKDGLYNDFLLEAVKLAGGNLLIAVSGVETAPGTLAHEGVVQALAY 121
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: A0A7S2XXL6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXL6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.820e-17
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 DTCSLDSKEQQRVAKALRQ-ALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTAL 333
            D  SLD +E+  +++ +   A GE   V +  PL R+ LK + L      G  +I+LCHYNEGR+LLTD+DG+YN+FI EA + TGGNVF+ +  +S+S   LA++ +V++L
Sbjct:    7 DIYSLDRRERYVLSETMNGIACGEKKLVLNSNPLSRTMLKDMVLCS----GPDMIILCHYNEGRLLLTDQDGLYNNFIKEAVKATGGNVFLVVTGLSSSGGVLADKRVVSSL 114
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: A0A7S1XMY7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMY7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.550e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   37 VAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAY 339
            V K  + A   DV+V     LL+   +G+++  D      L++LCHYNEGRVLLTD DGMYNDF++ A R  GGN+ + ++ V T   SLAN   V +L +
Sbjct:  131 VEKVCKSAGLGDVQVLPEKLLLKDLKEGVEVGADAS----LVILCHYNEGRVLLTDRDGMYNDFLVVAHRNCGGNILLVISGVETEGDSLANTAFVDSLVW 227
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: A0A7R9UAW8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAW8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.740e-14
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:  109 ELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAY 339
            +LK +K    G D   L++LCHYNEGRVL+TD DGMYNDF++ A +  GGNV + ++ V TS   LAN + V +L +
Sbjct:   41 QLKELKSDAFGLDAS-LVILCHYNEGRVLITDRDGMYNDFLVVASKNAGGNVLLVVSGVDTSDGELANTSFVDSLVW 116
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: A0A7S2SN66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN66_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.720e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:   10 SLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAYR 342
            +LD +E + VA+AL ++ G    V    PL   E++  +   D  D    I+LCH+ EGR LLTD DG+YN F+ +A  +  GNVF+AL  +ST    LAN  +V  L ++
Sbjct:   16 TLDPEEHRGVAEALERSTGCGAVVR---PLRLKEVRHFRFPRD-TDTPDAIILCHFAEGRTLLTDTDGLYNAFLSQAVPMVHGNVFLALTNISTPPEVLANSEVVAELVHQ 122
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: A0A7S3JRP1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRP1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.370e-9
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:  157 LILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPV 285
            +ILLCHY +GR LLTD DG+YN F++EA   TGG VFVAL  V
Sbjct:   52 VILLCHYFDGRTLLTDNDGLYNTFLVEAVAATGGYVFVALTGV 94
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BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Match: A0A0G4EHK5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHK5_VITBC)

HSP 1 Score: 54.3 bits (129), Expect = 1.120e-6
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:  100 LRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAY 339
            ++++L+G  L E  +    ++++ H NEGR+LLTD +G+YND +      T  NV + +  V TS  +L +  LV  LA+
Sbjct:    1 MKAQLRGFLLAER-KTAVDMVVIVHRNEGRLLLTDRNGLYNDVLQACWHATNANVVIIVTKVPTSPDTLNDSALVATLAH 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10352.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FM81_ECTSI8.350e-6998.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8Z1_9STRA2.430e-2147.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XXL6_9STRA4.820e-1743.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1XMY7_9STRA6.550e-1543.56Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UAW8_9STRA4.740e-1449.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SN66_9STRA2.720e-1239.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JRP1_9STRA4.370e-965.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A0G4EHK5_VITBC1.120e-635.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10352contigEcto-sp8_S_contig10352:36..3056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size345
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004730.1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.2419686-CDS-Ecto-sp8_S_contig10352:35..1271681143134.2419686-CDS-Ecto-sp8_S_contig10352:35..127Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10352 36..127 -
1681143134.2515092-CDS-Ecto-sp8_S_contig10352:953..10891681143134.2515092-CDS-Ecto-sp8_S_contig10352:953..1089Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10352 954..1089 -
1681143134.265559-CDS-Ecto-sp8_S_contig10352:2939..30561681143134.265559-CDS-Ecto-sp8_S_contig10352:2939..3056Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10352 2940..3056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10352.574.1prot_Ecto-sp8_S_contig10352.574.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10352 36..3056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10352.574.1

>prot_Ecto-sp8_S_contig10352.574.1 ID=prot_Ecto-sp8_S_contig10352.574.1|Name=mRNA_Ecto-sp8_S_contig10352.574.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp
DTCSLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDG
GRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSAT
SLANETLVTALAYR*
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mRNA from alignment at Ecto-sp8_S_contig10352:36..3056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10352.574.1 ID=mRNA_Ecto-sp8_S_contig10352.574.1|Name=mRNA_Ecto-sp8_S_contig10352.574.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3021bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10352:36..3056- (Ectocarpus species8 EcLAC_412)
GATACCTGCAGCCTCGACAGCAAGGAGCAGCAGAGAGTAGCGAAGGCTCT
CCGACAAGCCCTGGGCGAAGATGTAGAGGTTTCTTCCCCCCCGCCCCTCT
TGCGATCAGAGCTAAAGGTAGCTATCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGACGTGAGTCTCAGTGCGGTTGAGA
ACACGAAACACTTCTAAATGTCATTACATGACTGGGACCCCGTGAGGGGG
CGGCATGGTGGAGGCTAAGCTATTCTCCGGATTCAAGACAGAAACGGTAG
CAACAGAGGAAAACTGCATGTGTCTACCAAGGCGGCTATGCATACCTTGC
GCTCAAGTTCGTTTTGGAGTGCTTTCACCATCATCCTCCTTGCTTTCTCC
ACCATCCCTCTCATCTATTACAGCTATTTCTCGGCAGATCTTCTCTAGCC
CTGCGCCGTTTGTTGTGGGGAAGGTCATCTGGCTCGAAGCTCTTGTTCTC
TTCCATTCCATGATTCCCTCCTCGATTGCTGTCTTGGTTGTTCTTATGTC
CTCCCGTTCAATCTCCTCCTCCTTCATTGCTACCAAATGAATTCCCCATT
GCCATAATCATCGTCTTCTTCTGCACTAGCTACTGAGATTCCAACCTATT
GGCCGTGGTGGAAATTGGTCGATGAGTAGTCCATGACGTTTGAAAACATC
ACCAGCTCGAAGGTAAACCGTCTCCAAATCCTGTTGGTATGATAAGCCTT
CAGGCGAAGCAAGCCTGTTTCGTCGTGTGTGCGTGTGCGCGCGCGGGTGA
ACCGGCACTATTGGGGGTTACAGCGGCGCCCAACCGGCACTATACCGGGC
AAGCTCTCAATGGTGCCAGTCTGGCACTATTGAGGGCTCCGCCTGTGTAC
AGAGATGTTGCCGGCACTATACTGGGCACCTGGCACTATTCAACCGGCAC
TATGCAGGTCCCTCGACTGTAATCACGTTGTACCCCCGTTCGGACTTGCA
AACGCCGCCCCCTCCTTTGTTCGCTGTTTTGTTTGTTCCTACATGTATGT
TCATGAACCCATCGTAGGGTATCAAGCTTCGCGAGGACGGACGGGACGGC
GGGCGATTAATATTGCTATGCCACTACAATGAGGGCCGAGTTCTTCTGAC
GGATGAGGATGGCATGTACAATGATTTTATTATGGAGGCGTGCAGGGTGA
CAGGTGCAAGTATTTTTTGTTGCGCCAACACGATATTTATCGTGTGCCCG
ATATTGGAAATTGCTTATTGCCTTGAAAATGCATACTTTAGTTAAGTCCG
GCTCCGTGCGTAGGTCCCCGGTTTGACAACTGAACGGCTGTGTAGGTTTC
TGTACATACATTCCGTTGTGCAGGCAGCATCCAGTCCAGCGTGCATTGTT
GTACCTCACCCCGTCTGATGCTTTGCGCTTGGGGCTGTTCGCATGCCTTC
CTGGTGGGGAAGAAACCCGACGCACTGCTGTGTCCCCCAAGTGGCGGTTG
GAATGCGAGGCTACTTGCCCTCCGTCGAACTGCGAACAGCGGTCCCTTGT
AGAGGGTGTGGGGTGGTACTGACTTCCTTCATTTTTTTTTGGTGGTGGCG
TTTTGGTCGTTTTTTCCAAGCCCGAAAGGTTGGGGGGTGCGCTGTTGTTT
TTTCCACACAGCCCCGCCCTTGTTATGTGATCGGAAGAAAACGTCCACGG
CCCGTAAGAGGGTTGTCGACCGGTCGAAATGTAGAAACTGACGACGTATA
TTTTATTTGTTGGCTTTTCCTGCCGAACCCGCGTGGATCCCACCAACTGG
TGCACGTAAGAAATGCAGCTGCGGAGACGCAAGGATTTGTAGCCAGGTTG
GAGCAGTGTGATTATTCCCTGCCGTTCCGAGAGGAAATTTTGCGCGGTCA
CCGATCACCGATCGAACTGGCGCACGATCAAGCAACGAGCCAGGACGACC
CCCCCCTCGGAGAACAACATCTTACATCTTGTTGCGAAAATTGACATGTT
GGCGTGTTCGCGGACGTTGACATTGACAGGGGGCAACGTTTTCGTGGCGT
TGGCACCGGTGTCTACCTCTGCGACGTCCTTGGCGAACGAGACGCTGGTT
ACGGCGTTAGCGTATAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10352:36..3056-

>mRNA_Ecto-sp8_S_contig10352.574.1 ID=mRNA_Ecto-sp8_S_contig10352.574.1|Name=mRNA_Ecto-sp8_S_contig10352.574.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10352:36..3056- (Ectocarpus species8 EcLAC_412)
GATACCTGCAGCCTCGACAGCAAGGAGCAGCAGAGAGTAGCGAAGGCTCT
CCGACAAGCCCTGGGCGAAGATGTAGAGGTTTCTTCCCCCCCGCCCCTCT
TGCGATCAGAGCTAAAGGGTATCAAGCTTCGCGAGGACGGACGGGACGGC
GGGCGATTAATATTGCTATGCCACTACAATGAGGGCCGAGTTCTTCTGAC
GGATGAGGATGGCATGTACAATGATTTTATTATGGAGGCGTGCAGGGTGA
CAGGGGGCAACGTTTTCGTGGCGTTGGCACCGGTGTCTACCTCTGCGACG
TCCTTGGCGAACGAGACGCTGGTTACGGCGTTAGCGTATAGGTGA
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