mRNA_Ecto-sp8_S_contig103510.571.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103510.571.1
Unique NamemRNA_Ecto-sp8_S_contig103510.571.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: A0A6H5K3X3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3X3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.250e-28
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 RESRFGVFPAGAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            RESRFGV PAGAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQ+
Sbjct:  696 RESRFGVLPAGAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQI 751
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: UPI0003F07C29 (zinc phosphodiesterase ELAC protein 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07C29)

HSP 1 Score: 75.1 bits (183), Expect = 2.740e-14
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 MQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            M LTFLGTASC P  +RGVSCTVLRNEGD W+FD GEG+QIQ+
Sbjct:    1 MDLTFLGTASCYPCPNRGVSCTVLRNEGDCWMFDCGEGSQIQI 43
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: A0A7S2BLW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLW7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.590e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 RESRFGVFPAGAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            R +   V PA + + +TF+GTASC+P  +RGVSCT LR  G++WLFD GEGTQI +
Sbjct:   26 RTALLPVIPA-SDIDITFIGTASCVPGLTRGVSCTALRRSGEVWLFDAGEGTQISI 80
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: A0A482SL08_9ARCH (Ribonuclease Z n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL08_9ARCH)

HSP 1 Score: 70.9 bits (172), Expect = 1.150e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 RESRFGVFPAGAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            R++R  V   G  M+L FLGTASC+PS SRGVS   LR +GD+W+FD GEGTQ+Q+
Sbjct:  201 RDNRLPVLETGE-MELYFLGTASCVPSVSRGVSSLTLRYKGDVWMFDCGEGTQVQI 255
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: F0XZ84_AURAN (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ84_AURAN)

HSP 1 Score: 70.5 bits (171), Expect = 1.270e-12
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 MQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            M++TFLGTASC+PS +RGVSCT LR +G  WLFD GEG+QIQV
Sbjct:    1 MEVTFLGTASCVPSITRGVSCTSLRYDGTTWLFDAGEGSQIQV 43
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: A0A8B7XPE7_ACAPL (zinc phosphodiesterase ELAC protein 1-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XPE7_ACAPL)

HSP 1 Score: 69.3 bits (168), Expect = 4.010e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   34 APMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQVL 171
            A M LTFLGTASC P+  RGVS TV R++G+ W+FD GEGTQIQ++
Sbjct:  216 AMMDLTFLGTASCFPTPKRGVSSTVFRHDGECWMFDCGEGTQIQIM 261
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: UPI0018D8AFF1 (zinc phosphodiesterase ELAC protein 1-like isoform X1 n=3 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8AFF1)

HSP 1 Score: 68.2 bits (165), Expect = 1.030e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   34 APMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQVL 171
            A M LTFLGTASC P+  RGVS TV R++G+ W+FD GEGTQIQ++
Sbjct:  295 AIMDLTFLGTASCFPTPKRGVSSTVFRHDGECWMFDCGEGTQIQLM 340
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: A0A7R9UIQ3_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UIQ3_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 1.630e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   31 GAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            G  M+L FLGT SC+P+  RGV+CTV+R +G  W+FD GEGTQIQ+
Sbjct:   21 GTDMELFFLGTGSCLPTVVRGVACTVVRMDGSFWMFDAGEGTQIQL 66
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BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: A0A7S4E198_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E198_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.860e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   40 MQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            + L FLGTASC+PS SR VSCT LR +  +WLFDVGEG+QIQ+
Sbjct:   87 LDLEFLGTASCVPSESRCVSCTALRKDSAIWLFDVGEGSQIQI 129
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Match: A0A8J5XSG8_DIALT (Lactamase_B domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSG8_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 1.920e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   31 GAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQV 168
            G  M+L FLGT SC+P+  RGV+CTV+R +G  W+FD GEGTQIQ+
Sbjct:  167 GTDMELFFLGTGSCLPTVVRGVACTVVRMDGSFWMFDAGEGTQIQL 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103510.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X3_9PHAE3.250e-2896.43Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
UPI0003F07C292.740e-1476.74zinc phosphodiesterase ELAC protein 1-like n=1 Tax... [more]
A0A7S2BLW7_9STRA4.590e-1355.36Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A482SL08_9ARCH1.150e-1258.93Ribonuclease Z n=1 Tax=archaeon TaxID=1906665 RepI... [more]
F0XZ84_AURAN1.270e-1272.09Lactamase_B domain-containing protein (Fragment) n... [more]
A0A8B7XPE7_ACAPL4.010e-1265.22zinc phosphodiesterase ELAC protein 1-like isoform... [more]
UPI0018D8AFF11.030e-1165.22zinc phosphodiesterase ELAC protein 1-like isoform... [more]
A0A7R9UIQ3_DIALT1.630e-1160.87Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7S4E198_9EUKA1.860e-1167.44Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A8J5XSG8_DIALT1.920e-1160.87Lactamase_B domain-containing protein n=1 Tax=Diac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103510contigEcto-sp8_S_contig103510:307..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.4
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D7FX51
Model size214
KEGG koko:K00784
KEGG Pathwayko03013,map03013
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.3'-tRNA processing endoribonuclease activity
EggNOG OGsCOG1234@1,KOG2121@2759
EC3.1.26.11
Cds size174
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.1263316-UTR-Ecto-sp8_S_contig103510:306..3451681143134.1263316-UTR-Ecto-sp8_S_contig103510:306..345Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig103510 307..345 +
1681143134.1459236-UTR-Ecto-sp8_S_contig103510:519..5201681143134.1459236-UTR-Ecto-sp8_S_contig103510:519..520Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig103510 520..520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.1370058-CDS-Ecto-sp8_S_contig103510:345..5191681143134.1370058-CDS-Ecto-sp8_S_contig103510:345..519Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103510 346..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103510.571.1prot_Ecto-sp8_S_contig103510.571.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103510 346..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103510.571.1

>prot_Ecto-sp8_S_contig103510.571.1 ID=prot_Ecto-sp8_S_contig103510.571.1|Name=mRNA_Ecto-sp8_S_contig103510.571.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
MQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQVLFRSRGV
GWRGAGV*
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mRNA from alignment at Ecto-sp8_S_contig103510:307..520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103510.571.1 ID=mRNA_Ecto-sp8_S_contig103510.571.1|Name=mRNA_Ecto-sp8_S_contig103510.571.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=214bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103510:307..520+ (Ectocarpus species8 EcLAC_412)
AGGGAGAGCCGTTTCGGAGTCTTCCCGGCCGGCGCGCCCATGCAGCTGAC
CTTCCTCGGCACGGCTTCCTGCATCCCGTCCACGTCGCGGGGGGTCTCCT
GCACCGTGCTCAGGAACGAGGGGGACCTGTGGCTCTTCGACGTTGGAGAG
GGGACGCAGATTCAGGTATTGTTCCGCTCTCGGGGGGTGGGTTGGCGGGG
AGCTGGTGTTTGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103510:307..520+

>mRNA_Ecto-sp8_S_contig103510.571.1 ID=mRNA_Ecto-sp8_S_contig103510.571.1|Name=mRNA_Ecto-sp8_S_contig103510.571.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103510:307..520+ (Ectocarpus species8 EcLAC_412)
ATGCAGCTGACCTTCCTCGGCACGGCTTCCTGCATCCCGTCCACGTCGCG
GGGGGTCTCCTGCACCGTGCTCAGGAACGAGGGGGACCTGTGGCTCTTCG
ACGTTGGAGAGGGGACGCAGATTCAGGTATTGTTCCGCTCTCGGGGGGTG
GGTTGGCGGGGAGCTGGTGTTTGA
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