mRNA_Ecto-sp8_S_contig103457.563.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103457.563.1
Unique NamemRNA_Ecto-sp8_S_contig103457.563.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.080e-21
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    7 QQTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            +QTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG
Sbjct: 1050 KQTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 1095
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BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.220e-21
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    7 QQTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            +QTVIY GNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG
Sbjct: 2106 KQTVIYVGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 2151
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BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A835Z302_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z302_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.840e-12
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 IYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGESMF 156
            +YA NVGDCRAV+CR GVA DLT DH+P+  DER RV+ AGG   F
Sbjct:   14 VYASNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYIRF 59
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BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A6S9V862_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9V862_CHRCT)

HSP 1 Score: 67.4 bits (163), Expect = 8.460e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   19 IYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            +Y  +VGDCRAVLCR GVA+ LT DHRP R DE+ R+KEAGG
Sbjct:  235 LYTSHVGDCRAVLCRNGVAVRLTQDHRPDRKDEQKRIKEAGG 276
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BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: G4YH79_PHYSP (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH79_PHYSP)

HSP 1 Score: 63.9 bits (154), Expect = 2.190e-11
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SPQQTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            S  + + Y  N+GDCRAVLCR G A+ LTSDH+PSR DE+ R+++AGG
Sbjct:   46 STSRRMFYTVNLGDCRAVLCRGGHAVPLTSDHKPSRPDEKKRIEKAGG 93
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BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A7S0E4F9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E4F9_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 5.530e-11
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 VIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            ++Y  N+GDCRAVLCR G+A+ LT DHRP R DE+ R+K AGG
Sbjct:   39 LLYTANLGDCRAVLCRGGLAVRLTEDHRPDRKDEQKRIKAAGG 81
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BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A7S0J345_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J345_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-10
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   19 IYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            ++  +VGDCRAVLCR G+A+ LT DHRP R DE+ R+KEAGG
Sbjct:  397 LFLSHVGDCRAVLCRDGIAVRLTQDHRPDRKDEQKRIKEAGG 438
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A7S0E7Z3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E7Z3_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-10
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 VIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            ++Y  N+GDCRAVLCR G+A+ LT DHRP R DE+ R+K AGG
Sbjct:  424 LLYTANLGDCRAVLCRGGLAVRLTEDHRPDRKDEQKRIKAAGG 466
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A3M6VJU8_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJU8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.660e-10
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 SPQQTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            +P +   Y  NVGDCRAV+CR G  + LTSDH+P R DER R+++AGG
Sbjct:  295 APHEVSFYTVNVGDCRAVMCRGGRGVPLTSDHKPDRVDERQRIEKAGG 342
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Match: A0A5J4ZTF7_9ASTE (PPM-type phosphatase domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZTF7_9ASTE)

HSP 1 Score: 61.6 bits (148), Expect = 3.860e-10
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   19 IYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 144
            ++  NVGDCR VL R+GVA  LT+DHRPSR+DER R++ +GG
Sbjct:   68 VHVANVGDCRVVLSRKGVAYALTNDHRPSREDERLRIENSGG 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103457.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L844_9PHAE2.080e-2197.83PPM-type phosphatase domain-containing protein n=1... [more]
D8LIK7_ECTSI7.220e-2195.65cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835Z302_9STRA3.840e-1265.22PPM-type phosphatase domain-containing protein n=1... [more]
A0A6S9V862_CHRCT8.460e-1269.05Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
G4YH79_PHYSP2.190e-1158.33PPM-type phosphatase domain-containing protein (Fr... [more]
A0A7S0E4F9_9EUKA5.530e-1162.79Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S0J345_9EUKA1.040e-1064.29Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0E7Z3_9EUKA1.040e-1062.79Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A3M6VJU8_9STRA2.660e-1056.25PPM-type phosphatase domain-containing protein n=2... [more]
A0A5J4ZTF7_9ASTE3.860e-1061.90PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103457contigEcto-sp8_S_contig103457:371..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.4
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2880.D8LIK7
Preferred namespnA
Model size156
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
Cds size156
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143133.5918286-CDS-Ecto-sp8_S_contig103457:370..5261681143133.5918286-CDS-Ecto-sp8_S_contig103457:370..526Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103457 371..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103457.563.1prot_Ecto-sp8_S_contig103457.563.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103457 371..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103457.563.1

>prot_Ecto-sp8_S_contig103457.563.1 ID=prot_Ecto-sp8_S_contig103457.563.1|Name=mRNA_Ecto-sp8_S_contig103457.563.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
SPQQTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGES
MF
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mRNA from alignment at Ecto-sp8_S_contig103457:371..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103457.563.1 ID=mRNA_Ecto-sp8_S_contig103457.563.1|Name=mRNA_Ecto-sp8_S_contig103457.563.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103457:371..526- (Ectocarpus species8 EcLAC_412)
TCCCCCCAGCAAACCGTGATCTACGCGGGCAACGTCGGCGACTGCCGGGC
GGTCTTGTGCCGAAGGGGCGTGGCTATCGACCTGACCTCCGACCACCGCC
CTTCGAGAGACGACGAGAGGGCGAGGGTTAAGGAAGCGGGCGGTGAGAGC
ATGTTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103457:371..526-

>mRNA_Ecto-sp8_S_contig103457.563.1 ID=mRNA_Ecto-sp8_S_contig103457.563.1|Name=mRNA_Ecto-sp8_S_contig103457.563.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103457:371..526- (Ectocarpus species8 EcLAC_412)
TCCCCCCAGCAAACCGTGATCTACGCGGGCAACGTCGGCGACTGCCGGGC
GGTCTTGTGCCGAAGGGGCGTGGCTATCGACCTGACCTCCGACCACCGCC
CTTCGAGAGACGACGAGAGGGCGAGGGTTAAGGAAGCGGGCGGTGAGAGC
ATGTTC
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