mRNA_Ecto-sp8_S_contig103456.562.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103456.562.1
Unique NamemRNA_Ecto-sp8_S_contig103456.562.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: D7FJ05_ECTSI (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ05_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 6.640e-59
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVR  N
Sbjct:   51 VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQN 143
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BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: A0A835YIK6_9STRA (Protein-tyrosine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.350e-34
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    4 SFLEDQDVTLVSLGEHDDK-----RNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            SFLEDQ+V LV LGE D+      ++++   + EE V+ AL  +VD+ HYP+L+ C TGKHRTGTVVACLRKLQRWNL+SIFEEYR FTKHKVR  N
Sbjct:   52 SFLEDQEVKLVCLGEQDESAQLANKSRNNHMIAEETVIEALSYLVDTTHYPLLVMCGTGKHRTGTVVACLRKLQRWNLSSIFEEYRHFTKHKVRVQN 148
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BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: F0ZWN6_DICPU (Tyrosine-protein phosphatase domain-containing protein n=4 Tax=Dictyostelia TaxID=33083 RepID=F0ZWN6_DICPU)

HSP 1 Score: 113 bits (283), Expect = 4.920e-30
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    4 SFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            +F+EDQD+ L+ LG   D     W P+ EEIV++AL+ I++   YP+++ CN G+HRTGTV+ CLRKLQRWNLTSIFEEYRRF   KVR  N
Sbjct:   53 NFVEDQDIELIHLGM--DTHQNPWNPISEEIVISALKIILNMESYPLMVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRFAGSKVRLLN 142
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BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: A0A8J4V656_9MYCE (Tyrosine-protein phosphatase domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V656_9MYCE)

HSP 1 Score: 112 bits (281), Expect = 8.840e-30
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    4 SFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            +F+EDQD+ L+ LG   D     W P+ EEIV++AL+ I++  +YP+ I CN G+HRTGTVV CLRKLQRWNLTSIFEEYRRF   KVR  N
Sbjct:   53 NFVEDQDIELIHLGM--DTHQNPWNPISEEIVISALKIILNPDNYPLHIMCNLGRHRTGTVVGCLRKLQRWNLTSIFEEYRRFAGSKVRLLN 142
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: D1060_DICDI (Probable tyrosine-protein phosphatase DG1060 n=2 Tax=Dictyosteliales TaxID=2058949 RepID=D1060_DICDI)

HSP 1 Score: 111 bits (278), Expect = 2.730e-29
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    4 SFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            +F+EDQD+ L+ LG   D     W P+ EEIV++AL+ I++  +YP+ I CN G+HRTGTVV CLRKLQRWNLTSIFEEYRRF   KV+  N
Sbjct:   53 NFVEDQDIELIHLGM--DTHQNPWNPISEEIVISALKIILNPDNYPLHIMCNLGRHRTGTVVGCLRKLQRWNLTSIFEEYRRFAGSKVKLLN 142
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: A0A139ANM7_GONPJ (Protein-tyrosine phosphatase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ANM7_GONPJ)

HSP 1 Score: 111 bits (278), Expect = 3.990e-29
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            ++F++DQD+ +  LG        +W P+ EE+VL AL+ I+D  +YPV++ CN G+HRTGTV+ CLRKLQRWNLTSIFEEYRR+T  KVR  N
Sbjct:   55 LNFVDDQDIQMHHLGTTTS--TNAWDPISEEVVLEALDIILDPKNYPVMVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRYTGPKVRVLN 145
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BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: A0A1Y2CS44_9FUNG (Putative tyrosine phosphatase family protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CS44_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 2.970e-28
Identity = 50/93 (53.76%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            ++F++DQ++    LG  +   N +W P+ EE+VL +LE I+D  +YP+++ CN G+HRTGTV+ CLRKLQRWNLTSIFEEYRR+   KVR  N
Sbjct:   53 LNFIDDQEIAFHHLGLLNASAN-AWDPISEEVVLESLELILDPKNYPLMVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRYAGPKVRILN 144
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: M1VJ97_CYAM1 (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1VJ97_CYAM1)

HSP 1 Score: 108 bits (271), Expect = 2.970e-28
Identity = 50/93 (53.76%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            ++FL+D D+ LV +G   D+    W P+ EE+VLAAL+ I+D+ +YP+ + CN G+HRTGTV+ CLRKLQ+WNLTS+ EEYRR+   KVR  N
Sbjct:   52 LNFLDDHDIELVPVGWDSDQT--PWMPISEEVVLAALDVILDTENYPLHVMCNLGRHRTGTVIGCLRKLQQWNLTSVLEEYRRYVGGKVRLLN 142
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: A0A507DVU8_9FUNG (Tyrosine-protein phosphatase domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DVU8_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 3.580e-28
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    1 VSFLEDQDVTLVSLGEHDDKRN--KSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            ++F+EDQ+ TL  +G      +   +W PV EE+VLAAL  I++   YP++I CN G+HRTGTV+ CLRKLQ+WNLTSIFEEYRR+   KV+  N
Sbjct:   55 LNFIEDQEATLHHIGHPSSSTHLPSTWDPVSEEVVLAALAHILNPASYPLIIMCNLGRHRTGTVIGCLRKLQKWNLTSIFEEYRRYAGPKVKVLN 149
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Match: A0A1Y1Z2K8_9FUNG (Protein-tyrosine phosphatase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z2K8_9FUNG)

HSP 1 Score: 107 bits (267), Expect = 1.260e-27
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN 279
            + F++DQD+ L  LG  +     +W P+ EE+VL ALE I++  +YP+++ CN G+HRTGT+V CLRKLQRWNLTSIFEEYRR+   KVR  N
Sbjct:   54 LDFVDDQDIQLHHLGVVNTVN--AWDPITEEVVLEALELILEPRNYPMIVMCNLGRHRTGTIVGCLRKLQRWNLTSIFEEYRRYAGQKVRVLN 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103456.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ05_ECTSI6.640e-5997.85Tyrosine-protein phosphatase domain-containing pro... [more]
A0A835YIK6_9STRA2.350e-3462.89Protein-tyrosine phosphatase n=1 Tax=Tribonema min... [more]
F0ZWN6_DICPU4.920e-3057.61Tyrosine-protein phosphatase domain-containing pro... [more]
A0A8J4V656_9MYCE8.840e-3059.78Tyrosine-protein phosphatase domain-containing pro... [more]
D1060_DICDI2.730e-2958.70Probable tyrosine-protein phosphatase DG1060 n=2 T... [more]
A0A139ANM7_GONPJ3.990e-2955.91Protein-tyrosine phosphatase n=1 Tax=Gonapodya pro... [more]
A0A1Y2CS44_9FUNG2.970e-2853.76Putative tyrosine phosphatase family protein n=1 T... [more]
M1VJ97_CYAM12.970e-2853.76Tyrosine-protein phosphatase domain-containing pro... [more]
A0A507DVU8_9FUNG3.580e-2853.68Tyrosine-protein phosphatase domain-containing pro... [more]
A0A1Y1Z2K8_9FUNG1.260e-2754.84Protein-tyrosine phosphatase n=1 Tax=Basidiobolus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103456contigEcto-sp8_S_contig103456:2..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score187.2
Seed ortholog evalue3.5e-45
Seed eggNOG ortholog2880.D7FJ05
Preferred nameOCA1
Model size279
KEGG koko:K18043
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033554,GO:0034599,GO:0035335,GO:0036211,GO:0042221,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
EC3.1.3.48
Cds size279
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143133.5514078-CDS-Ecto-sp8_S_contig103456:1..1021681143133.5514078-CDS-Ecto-sp8_S_contig103456:1..102Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103456 2..102 -
1681143133.5634313-CDS-Ecto-sp8_S_contig103456:341..5191681143133.5634313-CDS-Ecto-sp8_S_contig103456:341..519Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103456 342..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103456.562.1prot_Ecto-sp8_S_contig103456.562.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103456 2..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103456.562.1

>prot_Ecto-sp8_S_contig103456.562.1 ID=prot_Ecto-sp8_S_contig103456.562.1|Name=mRNA_Ecto-sp8_S_contig103456.562.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=93bp
VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLI
TCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRFSN
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mRNA from alignment at Ecto-sp8_S_contig103456:2..519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103456.562.1 ID=mRNA_Ecto-sp8_S_contig103456.562.1|Name=mRNA_Ecto-sp8_S_contig103456.562.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=518bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103456:2..519- (Ectocarpus species8 EcLAC_412)
GTGAGTTTTCTGGAGGACCAAGACGTGACTCTGGTATCCCTAGGAGAACA
CGACGACAAGCGCAACAAGAGTTGGGCACCTGTTGGAGAGGAGATCGTGT
TGGCGGCCCTCGAACGCATTGTGGACTCTGTTCATTATCCAGTTCTTATA
ACGTGCAACACTGGCAAGCACAGGACGGGTGAGAAGCAAATGTACCTGTC
GGTTAGCTTGTTCGTTATCATTGCCACAGGTCCTTGTTTGGTTTGCTGAC
TTGTACTACTGCTGTACACCGGTAGCCAAGCCTGGGAAATAGGTGCCTGG
TACTAGAGGACAAGGTAGCGATGATCGTGCGCAGCGAATGATCAGGTAGC
ACAGCAGCATTTATGACCCACGTTGTGCCAATTCTATTTTGCACAACGTG
GTCTGCTTGCTGCAAAGGAACGGTGGTGGCGTGCCTTCGGAAACTTCAGC
GATGGAATTTGACATCAATCTTTGAGGAGTACCGTCGGTTCACCAAACAC
AAGGTGCGGTTCTCAAAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103456:2..519-

>mRNA_Ecto-sp8_S_contig103456.562.1 ID=mRNA_Ecto-sp8_S_contig103456.562.1|Name=mRNA_Ecto-sp8_S_contig103456.562.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103456:2..519- (Ectocarpus species8 EcLAC_412)
GTGAGTTTTCTGGAGGACCAAGACGTGACTCTGGTATCCCTAGGAGAACA
CGACGACAAGCGCAACAAGAGTTGGGCACCTGTTGGAGAGGAGATCGTGT
TGGCGGCCCTCGAACGCATTGTGGACTCTGTTCATTATCCAGTTCTTATA
ACGTGCAACACTGGCAAGCACAGGACGGGAACGGTGGTGGCGTGCCTTCG
GAAACTTCAGCGATGGAATTTGACATCAATCTTTGAGGAGTACCGTCGGT
TCACCAAACACAAGGTGCGGTTCTCAAAC
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