mRNA_Ecto-sp8_S_contig10345.560.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10345.560.1
Unique NamemRNA_Ecto-sp8_S_contig10345.560.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10345.560.1 vs. uniprot
Match: D8LCA2_ECTSI (PDE318, predicted plastid-localised Nog1-like GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA2_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 7.130e-82
Identity = 150/160 (93.75%), Postives = 151/160 (94.38%), Query Frame = 1 
Query:    1 MTRACATLTLFLGLPQGTMGFASSFSACRLQASAAPRTALLRACRVWGRTSSS---SSSERQPLRHLRRRRSEGLVASLSTKGEREVNPATEE-AQLLQQPSSVPESQRRHQQQPQQPRSKRGTTRKRLTSTGGLKSLPIVTPSIELLSHASRRSKKVSQ 468
            MTRACATLTLFLGLPQGTMGFASSFSACR QASAAPRTALLR CRVWGRTSSS   SSSERQPLRHLRRRRSEGLVASLSTKGERE +PATEE AQL QQ SSVPESQRRHQQQPQQPRSKRGTTRKRLTSTGGLKSLPIVTPSIELLSHASRRSKKVSQ
Sbjct:    1 MTRACATLTLFLGLPQGTMGFASSFSACRSQASAAPRTALLRGCRVWGRTSSSRSSSSSERQPLRHLRRRRSEGLVASLSTKGEREGHPATEEEAQLPQQLSSVPESQRRHQQQPQQPRSKRGTTRKRLTSTGGLKSLPIVTPSIELLSHASRRSKKVSQ 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10345.560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCA2_ECTSI7.130e-8293.75PDE318, predicted plastid-localised Nog1-like GTPa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10345contigEcto-sp8_S_contig10345:102..930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score263.8
Seed ortholog evalue5.2e-68
Seed eggNOG ortholog2880.D8LCA2
Preferred nameGTPBP4
Model size492
KEGG koko:K06943,ko:K11269,ko:K19307
KEGG Pathwayko03008,map03008
Hectar predicted targeting categorychloroplast
GOsGO:0000079,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000463,GO:0000470,GO:0001882,GO:0001883,GO:0001932,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006275,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007162,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008156,GO:0008285,GO:0008340,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009987,GO:0010259,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010883,GO:0010888,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0022407,GO:0022408,GO:0022607,GO:0022613,GO:0023051,GO:0030155,GO:0030334,GO:0030336,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033341,GO:0033342,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040012,GO:0040013,GO:0042127,GO:0042254,GO:0042273,GO:0042325,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045859,GO:0045934,GO:0046483,GO:0046626,GO:0048285,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050821,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051174,GO:0051225,GO:0051239,GO:0051246,GO:0051248,GO:0051270,GO:0051271,GO:0051338,GO:0051726,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0071900,GO:0080090,GO:0090304,GO:0090307,GO:0097159,GO:0097367,GO:0140014,GO:1900076,GO:1901265,GO:1901360,GO:1901363,GO:1902850,GO:1903047,GO:1903104,GO:1903320,GO:1903321,GO:1904029,GO:1905952,GO:1905953,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2000241
Exons2
EggNOG free text desc.negative regulation of collagen binding
EggNOG OGsCOG1084@1,KOG1490@2759
EC2.1.1.313
Cds size492
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143133.3754356-CDS-Ecto-sp8_S_contig10345:101..3251681143133.3754356-CDS-Ecto-sp8_S_contig10345:101..325Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10345 102..325 -
1681143133.4019413-CDS-Ecto-sp8_S_contig10345:662..9301681143133.4019413-CDS-Ecto-sp8_S_contig10345:662..930Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10345 663..930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10345.560.1prot_Ecto-sp8_S_contig10345.560.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10345 102..930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10345.560.1

>prot_Ecto-sp8_S_contig10345.560.1 ID=prot_Ecto-sp8_S_contig10345.560.1|Name=mRNA_Ecto-sp8_S_contig10345.560.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=164bp
MTRACATLTLFLGLPQGTMGFASSFSACRLQASAAPRTALLRACRVWGRT
SSSSSSERQPLRHLRRRRSEGLVASLSTKGEREVNPATEEAQLLQQPSSV
PESQRRHQQQPQQPRSKRGTTRKRLTSTGGLKSLPIVTPSIELLSHASRR
SKKVSQVRLGHRC*
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mRNA from alignment at Ecto-sp8_S_contig10345:102..930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10345.560.1 ID=mRNA_Ecto-sp8_S_contig10345.560.1|Name=mRNA_Ecto-sp8_S_contig10345.560.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=829bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10345:102..930- (Ectocarpus species8 EcLAC_412)
ATGACACGGGCGTGCGCTACTCTGACGCTTTTTCTCGGCTTACCGCAAGG
GACGATGGGTTTCGCGTCAAGCTTCTCCGCTTGTAGGTTACAGGCCTCAG
CCGCGCCACGGACGGCGCTGCTCCGTGCGTGCCGGGTGTGGGGACGAACA
AGCAGCAGCAGCAGCAGCGAGAGGCAACCGCTCCGTCACTTGCGACGGAG
ACGCTCGGAGGGCCTCGTTGCATCGCTTTCTACGAAAGGAGAGAGAGAAG
TCAACCCAGCGACCGAAGGTGCGCAGCAATCAACAGCGTTCGGGAGGCTT
AGGTAGCATGTTTTAGTTAGCTTCTGGGCGTATGGAGACAGCAGTAAGGT
GATGGCGTGGGTTTACTGACATCCAGCGTTGCTTATCTGGCGCTATTCTC
CGGATATTCTCCGTGCAAAGCCTGCTCGAGCACATGTATTTACAAGATCC
AACTTGCACCGCCGGCAGCCTGATGGAAAAGGACGTCGACGATCCCACTG
AGCGTTAGGGAGGGACACAGCATATTTCAACTTCATGTCAGTCATCGTGT
CCTCCTTGTACCAACAGCCGTGCTACCCCCCCCCTCTCCTCGCAAAACAC
GGAAGAAGCGCAACTGCTCCAACAGCCTTCATCAGTGCCGGAATCGCAGC
GTCGTCACCAACAACAGCCACAACAGCCACGTAGTAAGAGGGGCACCACA
CGAAAGCGGCTAACGTCGACAGGAGGACTCAAGTCCCTCCCCATCGTCAC
GCCCTCGATAGAGCTTCTCTCGCACGCTAGCCGGAGGTCCAAGAAGGTGT
CTCAGGTGCGCCTCGGCCATCGTTGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10345:102..930-

>mRNA_Ecto-sp8_S_contig10345.560.1 ID=mRNA_Ecto-sp8_S_contig10345.560.1|Name=mRNA_Ecto-sp8_S_contig10345.560.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10345:102..930- (Ectocarpus species8 EcLAC_412)
ATGACACGGGCGTGCGCTACTCTGACGCTTTTTCTCGGCTTACCGCAAGG
GACGATGGGTTTCGCGTCAAGCTTCTCCGCTTGTAGGTTACAGGCCTCAG
CCGCGCCACGGACGGCGCTGCTCCGTGCGTGCCGGGTGTGGGGACGAACA
AGCAGCAGCAGCAGCAGCGAGAGGCAACCGCTCCGTCACTTGCGACGGAG
ACGCTCGGAGGGCCTCGTTGCATCGCTTTCTACGAAAGGAGAGAGAGAAG
TCAACCCAGCGACCGAAGAAGCGCAACTGCTCCAACAGCCTTCATCAGTG
CCGGAATCGCAGCGTCGTCACCAACAACAGCCACAACAGCCACGTAGTAA
GAGGGGCACCACACGAAAGCGGCTAACGTCGACAGGAGGACTCAAGTCCC
TCCCCATCGTCACGCCCTCGATAGAGCTTCTCTCGCACGCTAGCCGGAGG
TCCAAGAAGGTGTCTCAGGTGCGCCTCGGCCATCGTTGTTAG
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