mRNA_Ecto-sp8_S_contig1034.553.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1034.553.1 vs. uniprot
Match: D7FRI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI7_ECTSI) HSP 1 Score: 265 bits (677), Expect = 7.290e-80 Identity = 187/340 (55.00%), Postives = 197/340 (57.94%), Query Frame = 1
Query: 1075 ISEVEIYVEVTQTEVFIPAAEAWNDVAADTITTVTPSASWSVAGFGPNMTTDGDDNTVAATYWSCQAPTGTLSSSFDHDSCWLYFELNDDYIASYMILYVHESNDATKEPIQFDVYGCSIDAFSCYSVSQYDEPVGSSTTVPGTPLGEGERVNLIRPSAASFGIHFNLSAGAIVSISEVEIFVQTPDATPTPAPFVPTPETEAPVYSWMSGDDSDDDYVWANDXXXATGVNVSXXXXXXXXXXXXSTANDDGPAI--------------------------------GLPSSTADDADDAADIEDFGNGALARGGVCSRQGLVGAVAVGAIFISFAANAM 1998
+S+VEIYVEVTQTEVFIPAAEAWNDVAADTITTVTPSASWSVAGFGPNMTT Y+ DE VGSSTTVPGTPLGEGERVNLIRP S GIHFNLSAGAIVSISEVE+FVQTPDATPTPAPFVPTPETEAPVYSWM+GDDSD XXX XXXXXXXXXXXX TA D+ + DDADDAADI++FGNGALARGGVCSRQGLVG VAVGA+FISFAANAM
Sbjct: 45 LSQVEIYVEVTQTEVFIPAAEAWNDVAADTITTVTPSASWSVAGFGPNMTT--------------------------------------------------------------------------YA----DELVGSSTTVPGTPLGEGERVNLIRPLTVSLGIHFNLSAGAIVSISEVELFVQTPDATPTPAPFVPTPETEAPVYSWMNGDDSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATDEAGGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDADDAADIDNFGNGALARGGVCSRQGLVGVVAVGAMFISFAANAM 306
BLAST of mRNA_Ecto-sp8_S_contig1034.553.1 vs. uniprot
Match: D7FRI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI8_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.420e-43 Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1
Query: 316 FHESDDATQLSISFDVEVGYDTVHTDLTSPGTALGAGQRVNIPPGTSGNYLHLLFDLTSDQTIDVSEVEIFLDVDDPDDVVVAALPTIAT 585
FHESDDATQLSISFDVEVGYDTVHTDLTSPGTALGAGQRVN+PP SGNYLHLLFDLTSDQ IDVSEVEI+LDVDDPDDVVVA LPTI+T
Sbjct: 61 FHESDDATQLSISFDVEVGYDTVHTDLTSPGTALGAGQRVNMPPDASGNYLHLLFDLTSDQAIDVSEVEIYLDVDDPDDVVVATLPTIST 150
BLAST of mRNA_Ecto-sp8_S_contig1034.553.1 vs. uniprot
Match: A0A6H5L2E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E1_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.480e-37 Identity = 92/176 (52.27%), Postives = 97/176 (55.11%), Query Frame = 1
Query: 187 LTRDGEDNSVAESRWSCTLGTTTTCELQFEFDDYFDVSYLMIYF-------------------------------------------HESDDATQLSISFDVEVGYDTVHTDLTSPGTALGAGQRVNIPPGTSGNYLHLLFDLTSDQTIDVSEVEIFLDVDDPDDVVVAALPTIAT 585
LT+DG DNSVAESRWSCTLGT TTCELQ EFDD FDVSYLMI F HESDDATQLS SFDV+VGY TVHTDLTSPGTALGAGQRV EI+LDVDDPD+VVVA LPTI+T
Sbjct: 8 LTQDGADNSVAESRWSCTLGTATTCELQIEFDDCFDVSYLMISFKNTAGVGARPPTPCPVKTETVLRFAANETTRSVRLPSVDPLDFHESDDATQLSNSFDVQVGYGTVHTDLTSPGTALGAGQRV----------------------------EIYLDVDDPDNVVVATLPTIST 155 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1034.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1034.553.1 >prot_Ecto-sp8_S_contig1034.553.1 ID=prot_Ecto-sp8_S_contig1034.553.1|Name=mRNA_Ecto-sp8_S_contig1034.553.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=667bp MMSHGWMARLGMVALVLSIASRFASAEIVEAANVTNVVVDATAWDLRLGSback to top mRNA from alignment at Ecto-sp8_S_contig1034:2289..10886+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1034.553.1 ID=mRNA_Ecto-sp8_S_contig1034.553.1|Name=mRNA_Ecto-sp8_S_contig1034.553.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=8598bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1034:2289..10886+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1034:2289..10886+ >mRNA_Ecto-sp8_S_contig1034.553.1 ID=mRNA_Ecto-sp8_S_contig1034.553.1|Name=mRNA_Ecto-sp8_S_contig1034.553.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2001bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1034:2289..10886+ (Ectocarpus species8 EcLAC_412)back to top |