mRNA_Ecto-sp8_S_contig10337.549.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10337.549.1
Unique NamemRNA_Ecto-sp8_S_contig10337.549.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: D8LHH8_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.240e-25
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPPPAGFIPKSS 144
            SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPPPAGFIPKSS
Sbjct:  411 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPPPAGFIPKSS 458
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: A0A6H5JZ94_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ94_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.130e-24
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPPPAGFIPKSS 144
            SP+L SLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPPPAGFIPKSS
Sbjct:  396 SPELTSLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPPPAGFIPKSS 443
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: A0A0A9UX55_ARUDO (Umc1506 n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9UX55_ARUDO)

HSP 1 Score: 50.8 bits (120), Expect = 2.890e-7
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPP 117
            +P LA LL+ +LCKDP  RI LQAA EHPW+ G   P P
Sbjct:    2 NPQLADLLQRLLCKDPSDRITLQAAAEHPWVAGDKGPVP 40
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: UPI001F5D57DD (serine/threonine-protein kinase GRIK1-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D57DD)

HSP 1 Score: 54.3 bits (129), Expect = 3.110e-7
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPP 117
            SP+LA L++ +LCKDP +RI LQAA EHPW+ G   P P
Sbjct:  373 SPELADLIQRLLCKDPAERITLQAAAEHPWVAGADGPVP 411
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: A0A2I0XAW7_9ASPA (Serine/threonine-protein kinase GRIK1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XAW7_9ASPA)

HSP 1 Score: 51.2 bits (121), Expect = 3.630e-6
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 PDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDP-PPPAG 126
            P+L  LLRG+LCKDP QR+ L++A  HPW+    DP P P+G
Sbjct:  237 PELEELLRGLLCKDPSQRMTLESAARHPWLTRGTDPIPQPSG 278
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: A0A7J6HAK4_CANSA (Protein kinase domain-containing protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6HAK4_CANSA)

HSP 1 Score: 51.2 bits (121), Expect = 3.810e-6
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPP 117
            +P+L +L+ G+LCKDPLQR+ L+A  EHPW+ G   P P
Sbjct:  350 NPELKNLIEGILCKDPLQRLSLEAIAEHPWVIGDHGPLP 388
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: K3Y7I9_SETIT (Protein kinase domain-containing protein n=13 Tax=Panicoideae TaxID=147369 RepID=K3Y7I9_SETIT)

HSP 1 Score: 50.1 bits (118), Expect = 9.750e-6
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPP 117
            +P LA LL+ +LCKDP  RI LQAA EHPW+ G   P P
Sbjct:  367 NPQLADLLQRLLCKDPGDRITLQAAAEHPWVAGDKGPVP 405
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: A0A5J9W9M9_9POAL (Protein kinase domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9W9M9_9POAL)

HSP 1 Score: 49.7 bits (117), Expect = 1.340e-5
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPP 117
            +P LA LL+ +LCKDP  RI LQAA EHPW+ G   P P
Sbjct:  434 NPQLADLLQRLLCKDPGDRITLQAAAEHPWVAGDRGPVP 472
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: A0A5C7IUW7_9ROSI (Protein kinase domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IUW7_9ROSI)

HSP 1 Score: 48.9 bits (115), Expect = 2.470e-5
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    4 PDLASLLRGMLCKDPLQRIGLQAALEHPWM 93
            P+L  LL+G+LCKDP+QRI L  A EHPW+
Sbjct:  294 PELKDLLQGLLCKDPIQRIRLDVAAEHPWV 323
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BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Match: A0A3L6TFG9_PANMI (Serine/threonine-protein kinase GRIK1-like n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6TFG9_PANMI)

HSP 1 Score: 48.5 bits (114), Expect = 3.390e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 SPDLASLLRGMLCKDPLQRIGLQAALEHPWMRGVPDPPP 117
            +P LA L++ +LCKDP  RI LQAA EHPW+ G   P P
Sbjct:  280 NPQLADLIQRLLCKDPGDRITLQAAAEHPWVVGDKGPMP 318
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10337.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LHH8_ECTSI4.240e-25100.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JZ94_9PHAE5.130e-2495.83Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A0A9UX55_ARUDO2.890e-758.97Umc1506 n=2 Tax=Arundo donax TaxID=35708 RepID=A0A... [more]
UPI001F5D57DD3.110e-758.97serine/threonine-protein kinase GRIK1-like n=2 Tax... [more]
A0A2I0XAW7_9ASPA3.630e-654.76Serine/threonine-protein kinase GRIK1 n=2 Tax=Dend... [more]
A0A7J6HAK4_CANSA3.810e-653.85Protein kinase domain-containing protein n=4 Tax=C... [more]
K3Y7I9_SETIT9.750e-658.97Protein kinase domain-containing protein n=13 Tax=... [more]
A0A5J9W9M9_9POAL1.340e-558.97Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A5C7IUW7_9ROSI2.470e-563.33Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A3L6TFG9_PANMI3.390e-556.41Serine/threonine-protein kinase GRIK1-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10337contigEcto-sp8_S_contig10337:3..149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.4
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog2880.D8LHH8
Model size147
KEGG koko:K07298,ko:K07359
KEGG Pathwayko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04530,ko04920,ko04921,ko05034,map04068,map04140,map04150,map04151,map04152,map04211,map04530,map04920,map04921,map05034
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsKOG0585@1,KOG0585@2759
EC2.7.11.1,2.7.11.17
Cds size117
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.6123414-UTR-Ecto-sp8_S_contig10337:2..321681143132.6123414-UTR-Ecto-sp8_S_contig10337:2..32Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10337 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.624367-CDS-Ecto-sp8_S_contig10337:32..1491681143132.624367-CDS-Ecto-sp8_S_contig10337:32..149Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10337 33..149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10337.549.1prot_Ecto-sp8_S_contig10337.549.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10337 33..149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10337.549.1

>prot_Ecto-sp8_S_contig10337.549.1 ID=prot_Ecto-sp8_S_contig10337.549.1|Name=mRNA_Ecto-sp8_S_contig10337.549.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=39bp
MLCKDPLQRIGLQAALEHPWMRGVPDPPPPAGFIPKSS*
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mRNA from alignment at Ecto-sp8_S_contig10337:3..149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10337.549.1 ID=mRNA_Ecto-sp8_S_contig10337.549.1|Name=mRNA_Ecto-sp8_S_contig10337.549.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10337:3..149+ (Ectocarpus species8 EcLAC_412)
TCTCCCGACTTGGCCTCTTTGCTTCGGGGGATGCTGTGCAAGGATCCGCT
CCAACGCATCGGGCTACAGGCCGCTCTCGAACACCCTTGGATGCGGGGAG
TACCTGACCCCCCCCCGCCGGCGGGGTTCATACCGAAGTCTTCATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10337:3..149+

>mRNA_Ecto-sp8_S_contig10337.549.1 ID=mRNA_Ecto-sp8_S_contig10337.549.1|Name=mRNA_Ecto-sp8_S_contig10337.549.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10337:3..149+ (Ectocarpus species8 EcLAC_412)
ATGCTGTGCAAGGATCCGCTCCAACGCATCGGGCTACAGGCCGCTCTCGA
ACACCCTTGGATGCGGGGAGTACCTGACCCCCCCCCGCCGGCGGGGTTCA
TACCGAAGTCTTCATAA
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