mRNA_Ecto-sp8_S_contig103367.548.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103367.548.1
Unique NamemRNA_Ecto-sp8_S_contig103367.548.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103367.548.1 vs. uniprot
Match: D7FTL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.800e-8
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 2 
Query:   80 EVTFGSELDVIVYCGGGTAGPTGLAVG 160
            E TFGSELDVIVYCGGGTAGPTGLAVG
Sbjct:  143 EATFGSELDVIVYCGGGTAGPTGLAVG 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103367.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTL5_ECTSI1.800e-896.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103367contigEcto-sp8_S_contig103367:21..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_008620.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.567931-CDS-Ecto-sp8_S_contig103367:20..1021681143132.567931-CDS-Ecto-sp8_S_contig103367:20..102Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103367 21..102 +
1681143132.5817146-CDS-Ecto-sp8_S_contig103367:423..5031681143132.5817146-CDS-Ecto-sp8_S_contig103367:423..503Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103367 424..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103367.548.1prot_Ecto-sp8_S_contig103367.548.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103367 21..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103367.548.1

>prot_Ecto-sp8_S_contig103367.548.1 ID=prot_Ecto-sp8_S_contig103367.548.1|Name=mRNA_Ecto-sp8_S_contig103367.548.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
MAGVRWSWDMYGKRGAYDWDSSDQCHRSDVWFGAGRHRVLRGWDRRTDGV
SSGS
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mRNA from alignment at Ecto-sp8_S_contig103367:21..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103367.548.1 ID=mRNA_Ecto-sp8_S_contig103367.548.1|Name=mRNA_Ecto-sp8_S_contig103367.548.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103367:21..503+ (Ectocarpus species8 EcLAC_412)
ATGGCTGGAGTACGCTGGAGTTGGGACATGTACGGCAAGCGGGGGGCATA
TGACTGGGATAGCTCGGACCAATGCCACAGAAGTCAAATATTCCTATTTT
TTGTATGCACGACGCCTTTTTATTGTGTCTCCTGCAACACAAGCGTTGCG
GGCGACAGCACCGACAACGGCCGACCCCCTTGGCGCGCGTCAAGACAACC
GGTAGTCTTGTTTTCGCGAAAATCCTGTACGCTTGGCTGAACCATGCGGT
TTGGGATGAAGGCGAGACAAAAAGAAGGCCCCGCGCATGTGCATTGATTA
GCAGGTTCGCCACAACAGTCTTTGCGCTAGAATGTCCCCTTACGATGTGA
CGCATTCCTTAACATTTCGATGTGCCGTCGACTCTACGAAACCGTTGGCA
GAGGTGACGTTTGGTTCGGAGCTGGACGTCATCGTGTACTGCGGGGGTGG
GACCGCAGGACCGACGGGGTTAGCAGTGGGAGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103367:21..503+

>mRNA_Ecto-sp8_S_contig103367.548.1 ID=mRNA_Ecto-sp8_S_contig103367.548.1|Name=mRNA_Ecto-sp8_S_contig103367.548.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103367:21..503+ (Ectocarpus species8 EcLAC_412)
ATGGCTGGAGTACGCTGGAGTTGGGACATGTACGGCAAGCGGGGGGCATA
TGACTGGGATAGCTCGGACCAATGCCACAGAAGTGACGTTTGGTTCGGAG
CTGGACGTCATCGTGTACTGCGGGGGTGGGACCGCAGGACCGACGGGGTT
AGCAGTGGGAGT
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