mRNA_Ecto-sp8_S_contig10336.545.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10336.545.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI) HSP 1 Score: 338 bits (868), Expect = 1.590e-99 Identity = 395/464 (85.13%), Postives = 399/464 (85.99%), Query Frame = 1
Query: 127 VDVDAIAXXXXXXXXXVAADLSG---------------------GVDVPSVDIDAPSXXXXXXXXXLAGKMPSVEGGVGGELPSGDVSVTAPDLKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASLSVPDVPSVDVKKPKKGLFGGLFGS-KAKIEAPDADVSVPDVSADVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDIDAPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLSFKKPSLKGKAKVPDVDVAA 1452
VDVDA XXXXXXXXX AADLSG GVDVPSVDI+APS XXXXX LAGKMPSVEGGV GELPSGDVSVTAPD+KVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDAS+SVPDVPSVDVKKPKKGLFGGLFGS K KIE PDADVSVPDVSA VSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAD SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SVD+DAPS XXXXXXXXXX EGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLSFKKPSLKGKAKVPDVDVAA
Sbjct: 2132 VDVDASXXXXXXXXXXXAADLSGELRRKRPLHRTALPTRRSIDRGVDVPSVDINAPSGSXXXXXVDLAGKMPSVEGGVSGELPSGDVSVTAPDVKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLFGSSKGKIEVPDADVSVPDVSAGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSVDMDAPSXXXXXXXXXXXGKMPSVEGGVGGELPSGDVSVTAPDVKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLSFKKPSLKGKAKVPDVDVAA 2595
BLAST of mRNA_Ecto-sp8_S_contig10336.545.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE) HSP 1 Score: 252 bits (644), Expect = 9.580e-70 Identity = 279/436 (63.99%), Postives = 299/436 (68.58%), Query Frame = 1
Query: 184 DLSGGVDVPSVDIDAPSXXXXXXXXXLAGKMPSVEGGVGGELPSGDVSVTAPDLKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASLSVPDVPSVDVKKPKKGLFGGLFGS-KAKIEAPDADVSVPDVSADVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDIDAPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLSFKKPSLKGKA--------KVPDVDVAAPDVA 1464
D+SG VD PS ++ PS LAGKMP +PSG VSVTAPD+KVEGGD+SLTAGLAAGG+AAVGAIGAAVGLSGDKPDAELPSGDVDAS++VPDVPSVDVKKPKKGLFGGLFGS KAK+E PDADV++PDV+A XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVD+DAPS XXXXXXXXX EGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGL K ++ + +VPD DV+ PD +
Sbjct: 2136 DVSGSVDAPSGSVEVPSVD-------LAGKMPG--------MPSGGVSVTAPDVKVEGGDSSLTAGLAAGGMAAVGAIGAAVGLSGDKPDAELPSGDVDASVTVPDVPSVDVKKPKKGLFGGLFGSSKAKMEVPDADVAMPDVAA-----------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXSLKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDMDAPSXXXXXXXXXXAGKMPSVEGGFGGELPSGDVSVTTPDVKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLFGSKAKIEASSSLKRRRARRVPDADVSVPDAS 2497
BLAST of mRNA_Ecto-sp8_S_contig10336.545.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.330e-28 Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 1
Query: 271 KMPSVEGGVGGELPSGDVSVTAPDLKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASLSVPDVPSVDVKKPKKGLFGGL 552
+MPS+EGG GGEL VSVTAPD++VEGGDTSLTAGLAA GVA VGAIGAAVGLSGDKPDAE+PSG V SLS+P+ SVD++KP+K LFGGL
Sbjct: 728 EMPSLEGGAGGELSPSGVSVTAPDVQVEGGDTSLTAGLAASGVAIVGAIGAAVGLSGDKPDAEVPSGVVHVSLSIPEA-SVDIRKPRKVLFGGL 820 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10336.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10336.545.1 >prot_Ecto-sp8_S_contig10336.545.1 ID=prot_Ecto-sp8_S_contig10336.545.1|Name=mRNA_Ecto-sp8_S_contig10336.545.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=489bp MDAPSVEASAPSVGVEVPSVDIDAPSLGVDLPSGTMDAAVPSVDVDAIASback to top mRNA from alignment at Ecto-sp8_S_contig10336:464..3787- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10336.545.1 ID=mRNA_Ecto-sp8_S_contig10336.545.1|Name=mRNA_Ecto-sp8_S_contig10336.545.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3324bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10336:464..3787- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10336:464..3787- >mRNA_Ecto-sp8_S_contig10336.545.1 ID=mRNA_Ecto-sp8_S_contig10336.545.1|Name=mRNA_Ecto-sp8_S_contig10336.545.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1467bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10336:464..3787- (Ectocarpus species8 EcLAC_412)back to top |