mRNA_Ecto-sp8_S_contig10333.541.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10333.541.1
Unique NamemRNA_Ecto-sp8_S_contig10333.541.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: D8LTF8_ECTSI (Steroid-5-alpha-reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF8_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 2.140e-90
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 2 
Query:  410 SFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRAR 817
            SFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSR+YPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLR PGETGYKIP+GGMFAYVSGANYFGECV WIGFAIAGWSLPATAFALYTLSNLAPRAR
Sbjct:  101 SFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRIYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRRPGETGYKIPQGGMFAYVSGANYFGECVGWIGFAIAGWSLPATAFALYTLSNLAPRAR 236
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: A0A8B7YL18_ACAPL (3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YL18_ACAPL)

HSP 1 Score: 167 bits (424), Expect = 2.970e-47
Identity = 85/149 (57.05%), Postives = 97/149 (65.10%), Query Frame = 2 
Query:  368 NVVLSFVGSPRLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 814
            NV++S +     Q +FVF F  RGG+P  +   L    F   N YLQ  +L    VYP SW  DPRFIIG   F +GM IN  SD ILR LR PGETGYKIP GGMF YVSGAN+FGE VEW GFAIA WSLP  AFA++T  N+ PRA
Sbjct:   99 NVLISLMIFHYFQRTFVFTFLIRGGKPTTLLAFLLAFFFCVTNGYLQGQYLTHYAVYPQSWSRDPRFIIGVFLFFSGMAINIHSDSILRNLRKPGETGYKIPHGGMFEYVSGANFFGEAVEWSGFAIACWSLPGLAFAIFTACNIGPRA 247
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: L8GZ51_ACACA (3oxo-5-alpha-steroid 4-dehydrogenase 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZ51_ACACA)

HSP 1 Score: 165 bits (417), Expect = 3.210e-46
Identity = 79/137 (57.66%), Postives = 94/137 (68.61%), Query Frame = 2 
Query:  401 LQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPR 811
            +Q SFVFPF  RGG+P P  ++L   +F   N Y+Q  +  R  VY + W  DPRFI+G   F AGMFIN Q+D ILR LR PGET YKIP GGMF YVSGAN+FGE +EW GFA+A WS+ A AFA +T SN  PR
Sbjct:  109 IQRSFVFPFLIRGGKPTPAVLVLMAFVFCLGNGYMQGRYHTRYAVYADDWVYDPRFIVGIVLFFAGMFINIQADSILRNLRKPGETAYKIPRGGMFEYVSGANFFGEILEWTGFALASWSVVAFAFAFFTFSNTGPR 245
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: A0A7S2XZJ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZJ2_9STRA)

HSP 1 Score: 163 bits (413), Expect = 8.390e-46
Identity = 83/157 (52.87%), Postives = 99/157 (63.06%), Query Frame = 2 
Query:  350 N*THTINVVLS--FVGSPRLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 814
            N T   N++LS  FV    +  + VFP R R G+PMP+ +M+    F  IN YLQ  +L   +VY   W  D RF+ G   F AG  IN  SDGILR+LR    +GYKIP GGMF YVSGAN+FGE VEW GF  AGWSLPATAFA +T  N+ PRA
Sbjct:   75 NLTSLPNLILSSAFVAH-YINRTLVFPMRMRSGKPMPLSIMIMAFTFCCINGYLQARYLCSLKVYNEDWLADGRFLFGITLFLAGFAINMHSDGILRKLRTNNSSGYKIPRGGMFEYVSGANFFGEIVEWTGFTFAGWSLPATAFAFFTFCNIGPRA 230
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: UPI0018D62504 (3-oxo-5-alpha-steroid 4-dehydrogenase 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D62504)

HSP 1 Score: 162 bits (410), Expect = 3.660e-45
Identity = 80/149 (53.69%), Postives = 98/149 (65.77%), Query Frame = 2 
Query:  368 NVVLSFVGSPRLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 814
            N ++S +     Q +FVF F  RGG+P          +F   N YLQ  +L +  VY ++W  DPRFIIG   F  GM IN QSD ILR LR PGETGYKIP+GGMF Y+SGAN+FGE VEW GFA+A WSLP+ AF ++T SN+ PRA
Sbjct:   99 NFLISLMIIHYFQRTFVFTFLIRGGKPTTFLAFFLAFVFCITNGYLQGRYLTQYAVYQHNWLRDPRFIIGVILFFTGMAINIQSDSILRNLRKPGETGYKIPKGGMFEYISGANFFGEVVEWTGFALACWSLPSLAFLVFTASNIGPRA 247
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: C3YKJ9_BRAFL (3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) n=3 Tax=Branchiostoma TaxID=7737 RepID=C3YKJ9_BRAFL)

HSP 1 Score: 162 bits (409), Expect = 3.930e-45
Identity = 76/135 (56.30%), Postives = 92/135 (68.15%), Query Frame = 2 
Query:  410 SFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 814
            S +FP   RGG+P P+   L   LF   N Y+Q  +L +   YP+ W  DPRFI+G   F+ GM IN  SD ILR LR PGETGYKIP+GGMF YVSGAN+FGE +EW+GFA+A WSL A AFA +T  N+ PRA
Sbjct:  103 SLIFPMLIRGGKPTPLVPFLLALLFCVYNGYMQARYLSQYARYPDGWLTDPRFIVGILMFAVGMAINIHSDHILRNLRKPGETGYKIPQGGMFTYVSGANFFGETLEWVGFAVACWSLQAVAFATFTALNVGPRA 237
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: UPI000854EC10 (3-oxo-5-alpha-steroid 4-dehydrogenase 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854EC10)

HSP 1 Score: 161 bits (408), Expect = 4.440e-45
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = 2 
Query:  371 VVLSFVGSPRLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRAR 817
            V++ F     +Q + +FPF  RGG+P P+        F   N YLQ ++L +    P++W  DPRFI G+  F  GMFIN  SD ILR LR PGETGYKIP GG+F YVSGAN+FGE VEW GFA+AGWS P  AFA++T+  L  RA+
Sbjct:   82 VLMGFFICHYIQRTLIFPFLIRGGKPTPLASFALAFTFCCYNGYLQSSYLCKHATLPSNWTHDPRFIAGSVLFFCGMFINVYSDHILRNLRKPGETGYKIPHGGLFEYVSGANFFGEIVEWSGFAVAGWSTPGAAFAIFTVLVLLSRAQ 230
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: A0A6P4Z0V2_BRABE (3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z0V2_BRABE)

HSP 1 Score: 161 bits (407), Expect = 7.820e-45
Identity = 77/135 (57.04%), Postives = 91/135 (67.41%), Query Frame = 2 
Query:  410 SFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 814
            S +FP   RGG+P P+   L   LF   N YLQ  +L +   YP+ W  DPRFI+G   F+AGM IN  SD ILR LR PGE GYKIP+GGMF YVSGAN+FGE +EW GFA+A WSL A AFA +T  N+ PRA
Sbjct:  103 SLIFPLLIRGGKPTPLVPFLLALLFCVYNGYLQARYLSQYAQYPDGWLTDPRFIVGVFMFAAGMAINIHSDHILRSLRKPGEAGYKIPQGGMFTYVSGANFFGEILEWAGFAVACWSLQAVAFATFTTLNIGPRA 237
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: A0A8C5Q6K6_9ANUR (3-oxo-5-alpha-steroid 4-dehydrogenase n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5Q6K6_9ANUR)

HSP 1 Score: 161 bits (407), Expect = 8.040e-45
Identity = 78/139 (56.12%), Postives = 92/139 (66.19%), Query Frame = 2 
Query:  401 LQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRAR 817
            L  + +FPF  RGG+P PV   +   +F   N YLQ ++L R       WF DPRFI G   F  GMFIN  SD ILR LR PGETGYKIP GG+F YVSGAN+ GE VEW GFA+AGWSLP  AFA++TL  L+ RA+
Sbjct:   94 LHRTLIFPFFIRGGKPTPVFSFIMAFIFCCYNGYLQSSYLCRYATLTPEWFKDPRFITGIVMFFGGMFINIHSDHILRNLRKPGETGYKIPRGGLFDYVSGANFLGEIVEWSGFAVAGWSLPGAAFAIFTLLVLSSRAK 232
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Match: L1JHA2_GUITC (S5A_REDUCTASE domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JHA2_GUITC)

HSP 1 Score: 162 bits (411), Expect = 1.490e-44
Identity = 76/148 (51.35%), Postives = 100/148 (67.57%), Query Frame = 2 
Query:  371 VVLSFVGSPRLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGETGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 814
            ++L+   +  +  + ++P+RTRG +P P+ +ML   LF  +N Y+Q   L   + Y  SWF DPRF IG   F  GM IN QSD ILRRLR PGE GYKIP GGMF +VSGAN+ GE +EW GFA+A W+L + AFA++T  N+APRA
Sbjct:  168 ILLALFMAHYVNRALLYPWRTRGSKPTPLSVMLMAWLFCVVNGYMQTRMLTHVKKYEESWFIDPRFGIGVTIFFCGMLINFQSDDILRRLRKPGEVGYKIPRGGMFRFVSGANFLGEIIEWTGFAVASWTLQSAAFAVFTFCNIAPRA 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10333.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTF8_ECTSI2.140e-9097.06Steroid-5-alpha-reductase n=1 Tax=Ectocarpus silic... [more]
A0A8B7YL18_ACAPL2.970e-4757.053-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) n=... [more]
L8GZ51_ACACA3.210e-4657.663oxo-5-alpha-steroid 4-dehydrogenase 1, putative n... [more]
A0A7S2XZJ2_9STRA8.390e-4652.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0018D625043.660e-4553.693-oxo-5-alpha-steroid 4-dehydrogenase 1-like n=1 T... [more]
C3YKJ9_BRAFL3.930e-4556.303-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) n=... [more]
UPI000854EC104.440e-4551.683-oxo-5-alpha-steroid 4-dehydrogenase 1 n=1 Tax=Na... [more]
A0A6P4Z0V2_BRABE7.820e-4557.043-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) n=... [more]
A0A8C5Q6K6_9ANUR8.040e-4556.123-oxo-5-alpha-steroid 4-dehydrogenase n=2 Tax=Lept... [more]
L1JHA2_GUITC1.490e-4451.35S5A_REDUCTASE domain-containing protein n=1 Tax=Gu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10333contigEcto-sp8_S_contig10333:524..6515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score200.3
Seed ortholog evalue6.3e-49
Seed eggNOG ortholog2880.D8LTF8
Preferred nameSRD5A1
Model size819
KEGG rclassRC00145
KEGG koko:K09591,ko:K10901,ko:K12343,ko:K12344,ko:K14570
KEGG ReactionR02208,R02497,R07429,R07447,R08954,R10242
KEGG Pathwayko00140,ko00905,ko01100,ko01110,ko03008,ko03440,ko03460,ko05215,map00140,map00905,map01100,map01110,map03008,map03440,map03460,map05215
KEGG ModuleM00295,M00371,M00414
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000166,GO:0001501,GO:0001505,GO:0001655,GO:0001889,GO:0003006,GO:0003674,GO:0003824,GO:0003865,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006091,GO:0006629,GO:0006694,GO:0006702,GO:0006706,GO:0006720,GO:0006721,GO:0006725,GO:0006805,GO:0006807,GO:0006950,GO:0007154,GO:0007267,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007530,GO:0007548,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008209,GO:0008406,GO:0008584,GO:0008610,GO:0009055,GO:0009056,GO:0009058,GO:0009267,GO:0009410,GO:0009605,GO:0009636,GO:0009719,GO:0009725,GO:0009917,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010268,GO:0010817,GO:0012505,GO:0014070,GO:0014074,GO:0014823,GO:0014850,GO:0016020,GO:0016042,GO:0016101,GO:0016128,GO:0016129,GO:0016131,GO:0016132,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0016627,GO:0016628,GO:0016999,GO:0017144,GO:0018879,GO:0018894,GO:0018958,GO:0018963,GO:0019752,GO:0021510,GO:0021536,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021794,GO:0021854,GO:0021983,GO:0021987,GO:0022410,GO:0022414,GO:0022900,GO:0023052,GO:0030283,GO:0030431,GO:0030539,GO:0030540,GO:0030900,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031984,GO:0032354,GO:0032355,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0033218,GO:0033554,GO:0033574,GO:0033764,GO:0033765,GO:0033993,GO:0034641,GO:0034698,GO:0034754,GO:0035270,GO:0035690,GO:0036094,GO:0036477,GO:0042133,GO:0042175,GO:0042180,GO:0042181,GO:0042221,GO:0042428,GO:0042430,GO:0042445,GO:0042446,GO:0042448,GO:0042493,GO:0042537,GO:0042592,GO:0042594,GO:0042745,GO:0042747,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043627,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0046483,GO:0046546,GO:0046660,GO:0046661,GO:0046677,GO:0046683,GO:0048037,GO:0048471,GO:0048511,GO:0048512,GO:0048513,GO:0048545,GO:0048608,GO:0048731,GO:0048732,GO:0048806,GO:0048856,GO:0048878,GO:0050213,GO:0050661,GO:0050662,GO:0050802,GO:0050896,GO:0051384,GO:0051591,GO:0051716,GO:0055088,GO:0055114,GO:0060322,GO:0060348,GO:0060416,GO:0060992,GO:0061008,GO:0061370,GO:0061458,GO:0065007,GO:0065008,GO:0070402,GO:0070848,GO:0070852,GO:0070887,GO:0071310,GO:0071320,GO:0071363,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071392,GO:0071394,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071496,GO:0071548,GO:0071549,GO:0071704,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071871,GO:0071872,GO:0097159,GO:0097164,GO:0097327,GO:0097458,GO:0098827,GO:0120025,GO:1901160,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701
Exons9
EggNOG free text desc.3-oxo-5-alpha-steroid 4-dehydrogenase activity
EggNOG OGsKOG1638@1,KOG1638@2759
Ec32 ortholog descriptionsteroid-5-alpha-reductase
Ec32 orthologEc-02_006180.1
EC1.3.1.22,3.6.4.12
Cds size444
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10333.541.1prot_Ecto-sp8_S_contig10333.541.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10333 4001..6515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.1774359-UTR-Ecto-sp8_S_contig10333:523..6041681143132.1774359-UTR-Ecto-sp8_S_contig10333:523..604Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10333 524..604 -
1681143132.1881154-UTR-Ecto-sp8_S_contig10333:1311..13721681143132.1881154-UTR-Ecto-sp8_S_contig10333:1311..1372Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10333 1312..1372 -
1681143132.1972513-UTR-Ecto-sp8_S_contig10333:2243..23241681143132.1972513-UTR-Ecto-sp8_S_contig10333:2243..2324Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10333 2244..2324 -
1681143132.2066343-UTR-Ecto-sp8_S_contig10333:3016..30721681143132.2066343-UTR-Ecto-sp8_S_contig10333:3016..3072Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10333 3017..3072 -
1681143132.2163427-UTR-Ecto-sp8_S_contig10333:3904..40001681143132.2163427-UTR-Ecto-sp8_S_contig10333:3904..4000Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10333 3905..4000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.226072-CDS-Ecto-sp8_S_contig10333:4000..40361681143132.226072-CDS-Ecto-sp8_S_contig10333:4000..4036Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10333 4001..4036 -
1681143132.235708-CDS-Ecto-sp8_S_contig10333:4330..44391681143132.235708-CDS-Ecto-sp8_S_contig10333:4330..4439Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10333 4331..4439 -
1681143132.2453008-CDS-Ecto-sp8_S_contig10333:4729..48881681143132.2453008-CDS-Ecto-sp8_S_contig10333:4729..4888Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10333 4730..4888 -
1681143132.2548704-CDS-Ecto-sp8_S_contig10333:5877..59071681143132.2548704-CDS-Ecto-sp8_S_contig10333:5877..5907Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10333 5878..5907 -
1681143132.2674708-CDS-Ecto-sp8_S_contig10333:6405..65151681143132.2674708-CDS-Ecto-sp8_S_contig10333:6405..6515Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10333 6406..6515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10333.541.1

>prot_Ecto-sp8_S_contig10333.541.1 ID=prot_Ecto-sp8_S_contig10333.541.1|Name=mRNA_Ecto-sp8_S_contig10333.541.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=148bp
MVFSAGDGEADLLAKWMIVAAVATLGACSAVAPPYGRYSRAVIFGIRFPL
LDAKLGWILMECPNVLMSLWFLLYGSDEACLKSPANLALLSMFVLHYVNR
CERKGRTYCCQKSGWIQLDPHDQCSPQFRGITSFARVFRVSFPNARR*
back to top

mRNA from alignment at Ecto-sp8_S_contig10333:524..6515-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10333.541.1 ID=mRNA_Ecto-sp8_S_contig10333.541.1|Name=mRNA_Ecto-sp8_S_contig10333.541.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5992bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10333:524..6515- (Ectocarpus species8 EcLAC_412)
ATGGTTTTTTCCGCTGGGGATGGAGAGGCCGACCTGCTCGCGAAATGGAT
GATTGTGGCCGCAGTCGCCACGCTGGGCGCGTGCAGCGCGGTCGCACCCC
CGTATGGCAGGTTTGTGTTGCGGGTAGAATAATATTACCGAACTGATCGA
TCGACAATGCATTTTTTTGCGTGTCTGCTGCACATGTCTGTACCGTAAAG
AGGTGGAGAAGGGGCCGTTACAACGAGGGGTGGAGTAGTGCTGCTAGGCG
CTTAGCTTCCTAGCGTCATGAAACATGGAGCAGCTGAGCCGCTGAGCCTC
GCAGGTTTCGCCGCATTTTTTTTCTTGTCGCAGCTCCACACTGACTCTAT
TTCGAAAGAGCTGCATAGGTGCTGTCTACATTGTAAAACTACTGCAGTAC
ATACAGAGCACCTCAAGCGACGCACACACTTCGCATTTGTGCTCGTGTGC
TTTATTTTTGTCATGGTTTCCGTCTTTTAATTAATGTTTTGTCACCAAAT
AGAAAAACGTTTAGCCGCAGCTCGCTGAAAAGTTTTTTTTGTTTGCTGCT
GTGTGCCGGGTGCCCGGTGCCCGCCGCTGTCTCCTGTTGGTCTGCCCTCC
CCGCACAGGTACTCGAGAGCCGTCATATTTGGCATAAGGTAAGCTTCTGT
TGCACCGTTCACGTGGTGGGTGTGAATGTGTGTCCAGCCATTTGGCGCTT
GTTCTCTTGCGGTTGAGTTCACACTCGCAATTCCAAGAGAAGGGCAACTT
CTCTTTACGCGAACCCTACGATTGGTGTAGTCTACACTATTATTTAGTTC
CAACTTCTCTTTACGCGAACCCTACGATTGGTGTAGTCTACACTATTATT
TAGTTCAACTGCCTCACTTCAAGCAGTGCCGCCCCGCGCCCCGCTACATA
CTCACCCGCTCTTGATGTCGTGTGTTCCAAATCAGAAATCGCAACTTGCA
ATTTCCGGACGGCCTGTGAGAAACATTATTTTTTGTCATCCCGTATATTT
TGGACGTCGATCGTTCCACCACTTGCACCACCAATAAATTGGATGTACTT
CATTCCAATTTCTGGACCGCACCGGGCGGGGTCACACAGTTTTTTTTCTC
CGCCTTCCTTCTGCGATGCCATGCCTTGCTTTTTTATCGCGAAAATGATC
CAGCCGTTCCCCTCCCTCGTCGTTTTTTTGTATACACTAAGTTATCGCTC
TCCACATACAGCAGCTAGCAGTAGTTTTGGCCTAAAATGGCACATACATT
GTACACCTCTCAAGTGACAAGAAGGCGCGGAATTGAGGGTGAGTCAGGAC
AAGGAAGGGAGCAACATGCCGGAGCACACTACGTGCGCATATATCCGGGC
GTTCCCCTCGCCCACAGTCTCTCCTACCTAGCATTTTCCAAAGGAAGTTA
TGTGCGAGATTACGTCCCAGCATGCCATTACCAGCACCAGCCCCCGCCCC
ATCCCCATTCTGTAGCCGACAAACAAACATGATGAGAAGCGCGATCGATC
ATGTTTATTTTTTAGTTGGTGCCGAATACGAAGCGAAGCAATACCCTTGC
CTTGGTTGGCAACTTTAACTTTGGAAATCAAATCAATCACCTAGCGCGAC
CAACCCCGTTCCCGTCCGACCGATCAGGTTCCCCCTCCTGGACGCGAAGC
TGGGATGGATCCTAATGGAGTGCCCGAACGTGCTGATGTCGCTGTGGTTC
CTACTGTATGGCTCGGATGAAGCCTGCCTCAAAAGTCCTGCAAACCTTGC
TCTGTTGAGCATGTTCGTCCTGCACTACGTCAACAGGTACAGTACATTGG
CTAGACATGCTGTGCGGGTTTACCGTTCCCGCCTGTGCTTCTTTGACGCC
AGGATGGTAGCGTTGTTCCTCGAATTGGACACCCCGGCGGCCCGGCCGTT
TGTTGTGGTTGTGTAGGGCTAAGACTAGTAACTAGTTTGCCTGAGATGGG
AGTGCTAGTTTCTTTCTTGGCGACGCCTTGGGGCGGGTCTTGCTCTGTCG
CGGCTGACCTGCTTGCAGTCCCGACCCTGTGTTGTTGCTGGTCTCGTTCT
CGTTCTCGTTGTTGTGTGTCGCGAAGGTGTGAGAGGAAAGGGCGAACGTA
CTGCTGCCAGAAAAGCGGGTGGATTCAATTAGACCCACACGATCAATGTA
GTCCTCAGTTTCGTGGGATCACCTCGTTTGCAAGGGTATGTGCACCGTTG
AGAATACGGCAGCACCCACGCAACACACGAAACTTTGAGTCTCGACCAAA
GGAGAACTCTGGCTTGGTTATTGCGCCGTGCATTTCCGGTGGTTATCGTT
GGCCTCCGGCCTCTTTACGTCTGCTCCGCTTAACTCACCAGCCGGGACGC
CTATCATGGCGCCGCGATTTCTGTCCGCGTGAGCCCCATGTGCGTGTTGT
TTCTGACAACTTCCTCCTCCTTCCTCCTTGTTGCATGGAAACGGATTGAA
ACTACTGCTGCTGTTGTTTCGTATGATAGGTCTTTCGTGTTTCCTTTCCG
AACGCGCGGAGGTAGGCCAATGCCCGTGCCGATGATGCTCTTCGGCGCTC
TGTTCGTGAGCATCAACAGCTACCTGCAGTGTACTCACCTGCTGCGTTCG
CGAGTCTACCCGTGAGTACACTACTATCGGTCGATGGTGGTGCATACGTG
CATACATGCACACGTGAGATTAAAGAGCTCAATCCCACTCAAAAGGCTTA
ATCCCACTGATGCCGCCGGCTTTGGGCTTTGGGCATCGTTTTGTGTTCCC
GATCCTTAGGGCTCTCTGCTGATGGGCACTCTCTTTGACGAGTGTGGGTG
CTCAGGACATTTCGCCCCCAATTTCGGGAGTTTAGTACGATGCGTGTGTG
GTTCTAGCGCAAACAAGGTGCATGAAAGGTGTTGGGAAGGTGCAGTTAAG
CAGCAGAAGTTTCGTGGGGTGCAAACAGATTCGGCCGCGGATGACGATCT
TCGGGGTTGTGTGTAATCTACCTCTCTCCGCCCTCCTCAGACCAGTAGCC
TTGGCAGATCAGGGTGATTCTATTTAGAAAACATGTTGAATAAAGCATGC
AATCGCGGAAGATGGGTTGGGTTGGGGCTAGGGAATAGGGTCTGCGTACC
CCCTCCCTGTTCTAATTCCTCATGAACTTAGTTTCTCGCGAAGGCGGTTC
CTTCAAACCCTTCTCTAGCCTCTGGTTGTTGTTGATCGCGCTTGGGTTTG
CTTTGTGGCGTTGTTGCTGCTGCTCTCTTGCTGCTGCTGCTGCTGTTGGT
GTTGTTCCTCACGTTGACTCGTCGGAAGGAATCAACCATTCGACCATCAA
CCAGACAAGGGCACGCTACATGTTAAAACACCTACCGGAAGGTCGTGTAC
GTTTGATTAGCTGCTATCGGCGAGTATAGCATTAACGTTGCCGTTGCGGT
TTTCGTCTCGTTCGTTTCGATGCTGTTTTTGTTGCTGTGCAAGCAACTCC
TGGTTTGGAGACCCGCGCTTCATCATTGGCGCAGCGACTTTTTCCGCAGG
TGTGTTGGCTGTTTGCGTGATTTGTTCCTCGTGGTTCTTGTCTTGCTTCC
AAGCGTTGACACCCGTGTTGCCCTCACACTCCGCACGAGCTGTGAAGGTC
TGTACGTGCGGATATTCAAGGCTGCTCGGGTCAAAACCAGCACCTTGTAC
TTGGAAAGAAGAGAAGGGATTTTGGTTCGTGGAATCGTTTCGCACGGTTG
GGTTTGGCCGAGTGAAAAAGCGGGGGGGACTTCAAGCCATCCGTCCGCGA
AACTATTTTGTGGTTCTCATGCAAAATGGCGCTCGTTGCGGTGGTGTCTA
TCAATAGTCGTTGTTGGCCTTGTTCTTCACTTCATGCCACTCGGGGTCGT
GTTGGGTGAACGAATTCCTCCATCTATGCATACCCTCGGCTGTACAGTTC
GAACTAAAATGCAAGATATTCACAAAAAAATCGTGGCTACATGTATTGAT
CTACGTATACCTAGACTGTAACAAAAAAAGACTCGGCTGTACGGTAGGGT
TAGAATGCATGATATCCTCTAAAATCATTCTCTTGCTGCATATTTCATCG
GTAGTCATGTGCCGTCTCTTGTATGGCGCTCGTACAGCATGTATCAGTTT
TTTTTATATTTTTTCATGGGTCTCTGATGGATCGCTCCTCGTTCCTTCCT
TGTGCTCCTCCTCGTACCGCGCTGGCGGTACCTTCCAAAAGGCATGTTCA
TCAACTGTCAATCCGACGGAATCTTGAGGCGCCTTCGCGGCCCGGGAGAG
ACCGGCTACAAGATTCCAGAAGGTGAGAGCAACACCAAACTCTGCCACTA
GCGGCATAAACTACTTGCTGTATGCTTGGGCCGAAAAACCTCCATCTCGG
TTCCCACAAAAGAAAGCTGGCTACCGTCTTTGTCCGGCCTCTGATAAAAA
AAATCTTGAGAACTTTTCCGTTTGGCGTGGGAAAAGAATATATATAGAAC
GGATACTAAATAATAGCAGTGCTGTATTGTGTTGATCTTGTTTTAGAACC
AGAGTCGTTACAGTACTGCATCGTACGCATCCCCGCGACAACACGACAGT
AAGCTTGAGCCAGGTTGTGCCTCTCCATAACCAACAGTAGCCACCACATG
TTGTTGGACGTTTCTAGCAGTGTGCTTTCAAGTACGCATCCCTAGATCTG
AGAGAGGGGTATGTTGAAAACTGCTGTGGACTTGGAGTGCTACAATAGAG
AATATAGTGCCATGGATCTCGCTGTGTTGTAGAGTGCCGCTGCTGAGGTT
TACTTATTTGCTGCCTAATCCGACGATGTTTCTTGGGAGACCGACCGTAT
TTATGCAACATAGCTTCACACTCGATATGTACCATCTTGCTTTCATGGGC
CTCATGGAAGGAACCGCCGCTCTCTGGCGGTGTTCTTTAGGTAGACTGCG
AGTATGCTGGTCGAGGTTTCTCATGAGGGCAGTTGGCGATGTCGTGAGCG
CCGCAGAGCAGTAGCCCGGTATAGCGACATCACCAAAGTAGATGAATCAG
AGCAGCCTTTGGCTCAACCGTTGGTCCGGAACCCTCTTCCGTTCTGGCAG
TCGCAACGCGCTGCAGCTGATGCCCCCCTCTCCCCTACCCGCACTACTGC
GGTCGGGGCCGAAATCACCCGCTTCCTCCGTGGAACACCTCAGGTGGCAT
GTTCGCGTACGTGTCTGGCGCCAACTACTTCGGGGAGTGTGTCGAGTGGA
TCGGGTGCGTACATGTGTAGCAGCCTTGCGGTGTCTTCACCGTTTCATAA
GAGGAGGACATGTGCAACATTTCGGTACACACAGTCTTGCGTTTAGTCTA
TGTATACAAGCGTGAGACTCTCTCGTTCTGCGAGACTGCAAGCTATGCAT
ACGTCCTTGGTTTTTCTAAACAGTCTATTCATTGGTTTTGATTAAACGCC
ATGGCATCGTCATTCAAAATTTAGCCTAGACAGGGCTCGTGGTACTCCAT
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGG
TACCCCCAGGGGAACATGAGTACGTCCCAAGGAGCGGTTGACAGCAATTG
CTGTGCGTGGTTTAACCAGGGGAGAAGACAAGTCCATTGAGGACCAGGCG
CAACGTTGGAGACGAGACTGTGTTGTCGCACCGTACCTTTTAGAACGAAG
ATGCACGCGGTCTACGTGTGGAAGATAAAGATATGTACTATTTTCAGCGT
AACGGCACCTTTTCTTGGCAGGGCCGGGCCTGTCACGGTACTTGCTTATT
TCCGTGAAAGCACCAAGGCGGTCCGGTACTCTCTACCTGGTAATACCTTT
TTCCTCTGCCACCCGCCGTGCCTCCTCGCTCGTTTCTGTTGATGCTTCCC
TCCCCCTCCCCTGCTGCCGTTTTTGTGACTTGGGCACTTGCTTTGGCATT
GCATTGCATAGGTTCGCAATCGCGGGGTGGTCCTTACCGGCGACGGCGTT
TGCTCTCTACACCCTCTCCAACCTCGCCCCTCGAGCACGCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10333:524..6515-

>mRNA_Ecto-sp8_S_contig10333.541.1 ID=mRNA_Ecto-sp8_S_contig10333.541.1|Name=mRNA_Ecto-sp8_S_contig10333.541.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10333:524..6515- (Ectocarpus species8 EcLAC_412)
ATGGTTTTTTCCGCTGGGGATGGAGAGGCCGACCTGCTCGCGAAATGGAT
GATTGTGGCCGCAGTCGCCACGCTGGGCGCGTGCAGCGCGGTCGCACCCC
CGTATGGCAGGTACTCGAGAGCCGTCATATTTGGCATAAGGTTCCCCCTC
CTGGACGCGAAGCTGGGATGGATCCTAATGGAGTGCCCGAACGTGCTGAT
GTCGCTGTGGTTCCTACTGTATGGCTCGGATGAAGCCTGCCTCAAAAGTC
CTGCAAACCTTGCTCTGTTGAGCATGTTCGTCCTGCACTACGTCAACAGG
TGTGAGAGGAAAGGGCGAACGTACTGCTGCCAGAAAAGCGGGTGGATTCA
ATTAGACCCACACGATCAATGTAGTCCTCAGTTTCGTGGGATCACCTCGT
TTGCAAGGGTCTTTCGTGTTTCCTTTCCGAACGCGCGGAGGTAG
back to top