mRNA_Ecto-sp8_S_contig10333.540.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig10333.540.1
Unique Name	mRNA_Ecto-sp8_S_contig10333.540.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.640e-39
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTA 234
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA
Sbjct:  186 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTA 258

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.640e-38
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTA 234
            FE WNREER VAVLG R+W EKAG  IVRIDRLGKTFLSHLWQS KERLA GDRSCGNNAPSSRGRVVNGLTA
Sbjct:   93 FEAWNREERTVAVLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTA 165

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 5.450e-38
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTAM 237
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNG TAM
Sbjct:  295 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGQTAM 368

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.120e-37
Identity = 69/86 (80.23%), Postives = 71/86 (82.56%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTAMLRHAKHEYALAP 273
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA       EY L P
Sbjct:  620 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTP-EYVLLP 704

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.140e-37
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTA 234
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA
Sbjct:  370 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTA 442

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.140e-37
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTA 234
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA
Sbjct:  421 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTA 493

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 7.990e-37
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTAMLRHAKHEYAL 267
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA       EYAL
Sbjct:  443 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTL-EYAL 525

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.470e-36
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTA 234
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA
Sbjct:  706 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTA 778

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5JUI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.800e-36
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTA 234
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA
Sbjct: 1277 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTA 1349

[Close]

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.810e-36
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1

Query:   16 FETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQSTKERLAVGDRSCGNNAPSSRGRVVNGLTA 234
            FE WNREER VAVLG R+W EKAG DIVRIDRLGKTFLSHLWQS KERLA+GDRSCGNNAPSSRGRVVNGLTA
Sbjct: 1506 FEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTA 1578

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig10333.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JCQ0_9PHAE	4.640e-39	89.04	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJX4_9PHAE	1.640e-38	87.67	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J590_9PHAE	5.450e-38	87.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JE77_9PHAE	3.120e-37	80.23	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LRL5_9PHAE	4.140e-37	89.04	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KVX2_9PHAE	4.140e-37	89.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JD24_9PHAE	7.990e-37	82.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4L1_9PHAE	2.470e-36	89.04	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JUI9_9PHAE	2.800e-36	89.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5C9_9PHAE	2.810e-36	89.04	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig10333	contig	Ecto-sp8_S_contig10333:10..363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	61.2
Seed ortholog evalue	3e-07
Seed eggNOG ortholog	2880.D8LL78
Model size	356
KEGG rclass	RC00022,RC00112,RC01583,RC02958
KEGG ko	ko:K00600
KEGG Reaction	R00945,R09099
KEGG Pathway	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG Module	M00140,M00141,M00346,M00532
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	glycine hydroxymethyltransferase activity
EggNOG OGs	COG0112@1,KOG2467@2759
EC	2.1.2.1
Cds size	291
COG Functional cat.	H
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681143132.1122055-CDS-Ecto-sp8_S_contig10333:9..300	1681143132.1122055-CDS-Ecto-sp8_S_contig10333:9..300	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig10333 10..300 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681143132.1243553-UTR-Ecto-sp8_S_contig10333:300..363	1681143132.1243553-UTR-Ecto-sp8_S_contig10333:300..363	Ectocarpus species8 EcLAC_412	UTR	Ecto-sp8_S_contig10333 301..363 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig10333.540.1	prot_Ecto-sp8_S_contig10333.540.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig10333 10..300 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig10333:10..363+
coding sequence from alignment at Ecto-sp8_S_contig10333:10..363+

protein sequence of mRNA_Ecto-sp8_S_contig10333.540.1

>prot_Ecto-sp8_S_contig10333.540.1 ID=prot_Ecto-sp8_S_contig10333.540.1|Name=mRNA_Ecto-sp8_S_contig10333.540.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=97bp
EVHGDFETWNREERKVAVLGSRKWCEKAGSDIVRIDRLGKTFLSHLWQST
KERLAVGDRSCGNNAPSSRGRVVNGLTAMLRHAKHEYALAPSWDKT*

mRNA from alignment at Ecto-sp8_S_contig10333:10..363+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig10333.540.1 ID=mRNA_Ecto-sp8_S_contig10333.540.1|Name=mRNA_Ecto-sp8_S_contig10333.540.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10333:10..363+ (Ectocarpus species8 EcLAC_412)
GAGGTACATGGAGATTTTGAGACATGGAATAGAGAGGAGAGGAAGGTAGC
TGTACTGGGGAGTAGGAAGTGGTGTGAAAAGGCGGGAAGTGATATCGTTA
GGATAGATAGACTAGGAAAGACATTTTTGAGCCACCTTTGGCAAAGTACG
AAGGAACGATTGGCCGTCGGTGATCGGTCCTGTGGGAACAATGCTCCGTC
CTCTCGAGGACGCGTGGTAAATGGTCTAACCGCTATGCTTAGGCATGCAA
AACATGAGTACGCCCTCGCCCCCTCATGGGACAAAACATAATAAAAACGG
TCTGACGGCCTTTTGACCACACATCAGTGGGCGGACGAGTAATCGTGTTT
TTCG

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10333:10..363+

>mRNA_Ecto-sp8_S_contig10333.540.1 ID=mRNA_Ecto-sp8_S_contig10333.540.1|Name=mRNA_Ecto-sp8_S_contig10333.540.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10333:10..363+ (Ectocarpus species8 EcLAC_412)
GAGGTACATGGAGATTTTGAGACATGGAATAGAGAGGAGAGGAAGGTAGC
TGTACTGGGGAGTAGGAAGTGGTGTGAAAAGGCGGGAAGTGATATCGTTA
GGATAGATAGACTAGGAAAGACATTTTTGAGCCACCTTTGGCAAAGTACG
AAGGAACGATTGGCCGTCGGTGATCGGTCCTGTGGGAACAATGCTCCGTC
CTCTCGAGGACGCGTGGTAAATGGTCTAACCGCTATGCTTAGGCATGCAA
AACATGAGTACGCCCTCGCCCCCTCATGGGACAAAACATAA