mRNA_Ecto-sp8_S_contig103329.539.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103329.539.1
Unique NamemRNA_Ecto-sp8_S_contig103329.539.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103329.539.1 vs. uniprot
Match: D7G3B9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3B9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.540e-41
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:    1 LNLGGSIGFVLLDTVWSRVTWDGKIHQAGQNSPHGVDGSGTTAASEAPPLLSPGAWEALELELGRDSELRLLIVVMRVSLAG 246
            LNLGGSIG VLLDTVWSRVTWDGKIHQAG+NSPHGVDG GT AA EAPPLLSPGAWEALELELGRDSELRLLIVVMR +LAG
Sbjct:  495 LNLGGSIGLVLLDTVWSRVTWDGKIHQAGENSPHGVDGGGTAAAPEAPPLLSPGAWEALELELGRDSELRLLIVVMRHALAG 576
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BLAST of mRNA_Ecto-sp8_S_contig103329.539.1 vs. uniprot
Match: A0A836CLN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.310e-11
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   16 SIGFVLLDTVWSRVTWDGKIHQAGQNSPHGVDGSGTTAASEAPPLLSPGAWEALELELGRDSELRLLIVVMRVSLAG 246
            ++  VLLDTVWSRV WDG +   G       DG    A  +A P ++P AW  LE EL  DS+LRL+IV  +V LAG
Sbjct:  466 AVAVVLLDTVWSRVRWDGAVCSGGGGXX--XDGGDGDAYGDALPCVAPDAWLQLERELSTDSDLRLVIVACQVPLAG 540
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103329.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3B9_ECTSI3.540e-4191.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLN7_9STRA3.310e-1148.05Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103329contigEcto-sp8_S_contig103329:107..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.8
Seed ortholog evalue2.1e-35
Seed eggNOG ortholog2880.D7G3B9
Model size300
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs28PVI@1,2QWI5@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_002290.3
Cds size300
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.0789526-CDS-Ecto-sp8_S_contig103329:106..4061681143132.0789526-CDS-Ecto-sp8_S_contig103329:106..406Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103329 107..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103329.539.1prot_Ecto-sp8_S_contig103329.539.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103329 107..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103329.539.1

>prot_Ecto-sp8_S_contig103329.539.1 ID=prot_Ecto-sp8_S_contig103329.539.1|Name=mRNA_Ecto-sp8_S_contig103329.539.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
LNLGGSIGFVLLDTVWSRVTWDGKIHQAGQNSPHGVDGSGTTAASEAPPL
LSPGAWEALELELGRDSELRLLIVVMRVSLAGNVGEIAGCRREGRSLSLE
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mRNA from alignment at Ecto-sp8_S_contig103329:107..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103329.539.1 ID=mRNA_Ecto-sp8_S_contig103329.539.1|Name=mRNA_Ecto-sp8_S_contig103329.539.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103329:107..406+ (Ectocarpus species8 EcLAC_412)
CTCAACCTGGGTGGGTCGATTGGCTTCGTCCTTCTCGACACCGTGTGGTC
GAGGGTGACTTGGGACGGCAAGATCCACCAAGCAGGGCAGAACTCCCCGC
ACGGCGTGGACGGGAGCGGCACGACGGCGGCATCGGAGGCCCCGCCGTTG
TTGTCGCCCGGTGCGTGGGAGGCTCTTGAGCTCGAGCTGGGCAGGGACTC
TGAGCTAAGGCTCCTGATTGTCGTCATGCGAGTGAGTCTCGCCGGCAATG
TGGGGGAAATTGCGGGATGCAGGAGGGAGGGAAGGAGCTTGAGTTTGGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103329:107..406+

>mRNA_Ecto-sp8_S_contig103329.539.1 ID=mRNA_Ecto-sp8_S_contig103329.539.1|Name=mRNA_Ecto-sp8_S_contig103329.539.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103329:107..406+ (Ectocarpus species8 EcLAC_412)
CTCAACCTGGGTGGGTCGATTGGCTTCGTCCTTCTCGACACCGTGTGGTC
GAGGGTGACTTGGGACGGCAAGATCCACCAAGCAGGGCAGAACTCCCCGC
ACGGCGTGGACGGGAGCGGCACGACGGCGGCATCGGAGGCCCCGCCGTTG
TTGTCGCCCGGTGCGTGGGAGGCTCTTGAGCTCGAGCTGGGCAGGGACTC
TGAGCTAAGGCTCCTGATTGTCGTCATGCGAGTGAGTCTCGCCGGCAATG
TGGGGGAAATTGCGGGATGCAGGAGGGAGGGAAGGAGCTTGAGTTTGGAA
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