mRNA_Ecto-sp8_S_contig103321.538.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103321.538.1
Unique NamemRNA_Ecto-sp8_S_contig103321.538.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: D7FYB4_ECTSI (Fe_hyd_SSU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYB4_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.100e-25
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 DSMAVEGVECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            +SMAVE  ECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQ+
Sbjct:  277 NSMAVEEGECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQM 330
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: A0A165F3E6_9APHY (Iron hydrogenase n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165F3E6_9APHY)

HSP 1 Score: 71.6 bits (174), Expect = 3.150e-13
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   25 ECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            E A R RG G+L +L SACPGW+CYAEKT PE LPF+S  KSPQQV
Sbjct:  180 EFAERRRGEGKLPMLASACPGWICYAEKTHPEMLPFISATKSPQQV 225
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: UPI0020083C20 (iron hydrogenase n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI0020083C20)

HSP 1 Score: 68.9 bits (167), Expect = 2.780e-12
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   25 ECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            E   R RG G+L +L SACPGW+CYAEKT  E LPF+ST KSPQQV
Sbjct:  181 EFQERKRGQGKLPMLASACPGWICYAEKTHAEMLPFISTTKSPQQV 226
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: A0A4Y9XVB3_9APHY (Fe_hyd_lg_C domain-containing protein n=2 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XVB3_9APHY)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-12
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   25 ECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            E   R RG G+L +L SACPGW+CYAEKT  E LPF+ST KSPQQV
Sbjct:  181 EFQERKRGEGKLPMLASACPGWICYAEKTHAEMLPFISTTKSPQQV 226
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: A0A1M2VXI8_TRAPU (Cytosolic Fe-S cluster assembly factor NAR1 n=2 Tax=Trametes TaxID=5324 RepID=A0A1M2VXI8_TRAPU)

HSP 1 Score: 68.2 bits (165), Expect = 5.220e-12
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 SMAVEGVECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            S+     E A R +G G+L +L SACPGWVCYAEKT  E LPF+S  KSPQQV
Sbjct:   81 SLLEHAKEFAERKKGDGKLPMLASACPGWVCYAEKTHSEMLPFISQTKSPQQV 133
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: A0A0L0DHQ7_THETB (Cytosolic Fe-S cluster assembly factor NARFL n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DHQ7_THETB)

HSP 1 Score: 68.2 bits (165), Expect = 5.220e-12
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 DSMAVEGVECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQ 156
            +S  V+ V  A+R  G G   VLTS+CPGW+CYAEKT PEALP ++ VKSPQ
Sbjct:  209 ESAVVDAVVSAKRTAGGGPAGVLTSSCPGWICYAEKTHPEALPHVARVKSPQ 260
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: A0A2H3K0W7_WOLCO (Iron hydrogenase n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3K0W7_WOLCO)

HSP 1 Score: 68.2 bits (165), Expect = 5.220e-12
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   19 GVECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            G E   R  G G+L +L SACPGW+CYAEKT PE LPF+S  KSPQQV
Sbjct:  181 GREFLERRAGMGKLPMLASACPGWICYAEKTHPEMLPFISATKSPQQV 228
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: A0A5C2SKY0_9APHY (Iron hydrogenase n=4 Tax=Polyporaceae TaxID=5317 RepID=A0A5C2SKY0_9APHY)

HSP 1 Score: 67.0 bits (162), Expect = 1.330e-11
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    4 SMAVEGVECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            S+     E A R  G G+L +L SACPGWVCYAEKT  E LPF+S  KSPQQV
Sbjct:  183 SLLEHAKEFAERKSGEGKLPMLASACPGWVCYAEKTHAEMLPFISRTKSPQQV 235
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BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: S8DP64_FOMPI (Fe_hyd_lg_C domain-containing protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8DP64_FOMPI)

HSP 1 Score: 66.6 bits (161), Expect = 1.820e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   25 ECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            E   R RG G+L +L SACPGW+CYAEKT  E LPF+S  KSPQQV
Sbjct:  181 EFQERKRGQGKLPMLASACPGWICYAEKTHAEMLPFISQTKSPQQV 226
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Match: A0A165RQD7_9APHY (Iron hydrogenase n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165RQD7_9APHY)

HSP 1 Score: 66.6 bits (161), Expect = 1.820e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   25 ECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQQV 162
            E   R RG G+L +L SACPGW+CYAEKT  E LPF+S  KSPQQV
Sbjct:  181 EFQERKRGQGKLPMLASACPGWICYAEKTHAEMLPFISQTKSPQQV 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103321.538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYB4_ECTSI1.100e-2592.59Fe_hyd_SSU domain-containing protein n=2 Tax=Ectoc... [more]
A0A165F3E6_9APHY3.150e-1369.57Iron hydrogenase n=1 Tax=Laetiporus sulphureus 93-... [more]
UPI0020083C202.780e-1267.39iron hydrogenase n=1 Tax=Antrodia serialis TaxID=1... [more]
A0A4Y9XVB3_9APHY2.800e-1267.39Fe_hyd_lg_C domain-containing protein n=2 Tax=Fomi... [more]
A0A1M2VXI8_TRAPU5.220e-1260.38Cytosolic Fe-S cluster assembly factor NAR1 n=2 Ta... [more]
A0A0L0DHQ7_THETB5.220e-1259.62Cytosolic Fe-S cluster assembly factor NARFL n=1 T... [more]
A0A2H3K0W7_WOLCO5.220e-1264.58Iron hydrogenase n=1 Tax=Wolfiporia cocos (strain ... [more]
A0A5C2SKY0_9APHY1.330e-1160.38Iron hydrogenase n=4 Tax=Polyporaceae TaxID=5317 R... [more]
S8DP64_FOMPI1.820e-1165.22Fe_hyd_lg_C domain-containing protein n=1 Tax=Fomi... [more]
A0A165RQD7_9APHY1.820e-1165.22Iron hydrogenase n=1 Tax=Daedalea quercina L-15889... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103321contigEcto-sp8_S_contig103321:64..228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score105.5
Seed ortholog evalue7.6e-21
Seed eggNOG ortholog2880.D7FYB4
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0009628,GO:0016491,GO:0016651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051540,GO:0055114,GO:0070482
Exons1
EggNOG free text desc.iron-sulfur cluster assembly
EggNOG OGsCOG4624@1,KOG2439@2759
Cds size159
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.029258-CDS-Ecto-sp8_S_contig103321:63..2221681143132.029258-CDS-Ecto-sp8_S_contig103321:63..222Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103321 64..222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.045446-UTR-Ecto-sp8_S_contig103321:222..2281681143132.045446-UTR-Ecto-sp8_S_contig103321:222..228Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig103321 223..228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103321.538.1prot_Ecto-sp8_S_contig103321.538.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103321 64..222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103321.538.1

>prot_Ecto-sp8_S_contig103321.538.1 ID=prot_Ecto-sp8_S_contig103321.538.1|Name=mRNA_Ecto-sp8_S_contig103321.538.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=53bp
MAVEGVECARRPRGPGELLVLTSACPGWVCYAEKTAPEALPFMSTVKSPQ
QV*
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mRNA from alignment at Ecto-sp8_S_contig103321:64..228-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103321.538.1 ID=mRNA_Ecto-sp8_S_contig103321.538.1|Name=mRNA_Ecto-sp8_S_contig103321.538.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103321:64..228- (Ectocarpus species8 EcLAC_412)
GATTCCATGGCGGTGGAAGGGGTGGAGTGCGCGAGACGGCCACGAGGGCC
GGGAGAGCTTTTGGTGCTGACGTCGGCCTGCCCCGGGTGGGTGTGCTACG
CGGAGAAGACGGCGCCTGAGGCACTCCCTTTTATGAGCACAGTCAAATCG
CCGCAGCAGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103321:64..228-

>mRNA_Ecto-sp8_S_contig103321.538.1 ID=mRNA_Ecto-sp8_S_contig103321.538.1|Name=mRNA_Ecto-sp8_S_contig103321.538.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103321:64..228- (Ectocarpus species8 EcLAC_412)
ATGGCGGTGGAAGGGGTGGAGTGCGCGAGACGGCCACGAGGGCCGGGAGA
GCTTTTGGTGCTGACGTCGGCCTGCCCCGGGTGGGTGTGCTACGCGGAGA
AGACGGCGCCTGAGGCACTCCCTTTTATGAGCACAGTCAAATCGCCGCAG
CAGGTATGA
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