mRNA_Ecto-sp8_S_contig10332.537.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10332.537.1
Unique NamemRNA_Ecto-sp8_S_contig10332.537.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10332.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10332contigEcto-sp8_S_contig10332:1340..1922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.972244-UTR-Ecto-sp8_S_contig10332:1339..13861681143131.972244-UTR-Ecto-sp8_S_contig10332:1339..1386Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10332 1340..1386 +
1681143131.995908-UTR-Ecto-sp8_S_contig10332:1776..19221681143131.995908-UTR-Ecto-sp8_S_contig10332:1776..1922Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10332 1777..1922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.9851012-CDS-Ecto-sp8_S_contig10332:1386..17761681143131.9851012-CDS-Ecto-sp8_S_contig10332:1386..1776Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10332 1387..1776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10332.537.1prot_Ecto-sp8_S_contig10332.537.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10332 1387..1776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10332.537.1

>prot_Ecto-sp8_S_contig10332.537.1 ID=prot_Ecto-sp8_S_contig10332.537.1|Name=mRNA_Ecto-sp8_S_contig10332.537.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
MFGVAVEGLKRTHPQPCPQQEPSCHPLAWRRWSMTSPGVVPGCASGGCAA
AGGSTIAAARAPTAVTCSGAERCGDDGGELGAFEAPKSGSTTLLDLADEP
RGSKEPVGAVGVGLSGRRSLVSPEVEGGL*
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mRNA from alignment at Ecto-sp8_S_contig10332:1340..1922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10332.537.1 ID=mRNA_Ecto-sp8_S_contig10332.537.1|Name=mRNA_Ecto-sp8_S_contig10332.537.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=583bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10332:1340..1922+ (Ectocarpus species8 EcLAC_412)
GGGCATCCACTAGTTCGTGAGCGCAGCTGCGATGCCCACAACTACACATG
TTCGGTGTCGCTGTTGAAGGTTTGAAACGCACGCATCCGCAGCCTTGTCC
CCAGCAGGAGCCTAGCTGCCACCCGCTTGCGTGGAGGAGGTGGTCGATGA
CCTCGCCGGGCGTGGTTCCTGGCTGTGCTTCAGGAGGTTGCGCTGCAGCT
GGTGGCTCCACCATTGCCGCCGCCCGTGCGCCGACTGCTGTGACATGTTC
CGGCGCCGAACGCTGCGGTGATGATGGTGGCGAGCTCGGGGCCTTCGAAG
CCCCCAAAAGCGGTTCAACTACCCTGCTGGACCTAGCAGATGAACCTCGT
GGCAGCAAGGAGCCTGTCGGCGCTGTCGGCGTTGGTCTATCTGGTCGCCG
ATCTCTGGTGTCGCCCGAGGTGGAAGGGGGCTTGTGACGAGGCCGGTTGA
CGCTGCTCCTGCTGCGTACATCCGATTTTTTCGGTGGCCTCGCCCCGTCA
GCTGAAGAGATTCTGGGGTTTACAACCGCGGGGAAAGAGGGAACAAGTGG
TGAAGGAAGAGATCCTGCCTTGCGTTTACGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10332:1340..1922+

>mRNA_Ecto-sp8_S_contig10332.537.1 ID=mRNA_Ecto-sp8_S_contig10332.537.1|Name=mRNA_Ecto-sp8_S_contig10332.537.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10332:1340..1922+ (Ectocarpus species8 EcLAC_412)
ATGTTCGGTGTCGCTGTTGAAGGTTTGAAACGCACGCATCCGCAGCCTTG
TCCCCAGCAGGAGCCTAGCTGCCACCCGCTTGCGTGGAGGAGGTGGTCGA
TGACCTCGCCGGGCGTGGTTCCTGGCTGTGCTTCAGGAGGTTGCGCTGCA
GCTGGTGGCTCCACCATTGCCGCCGCCCGTGCGCCGACTGCTGTGACATG
TTCCGGCGCCGAACGCTGCGGTGATGATGGTGGCGAGCTCGGGGCCTTCG
AAGCCCCCAAAAGCGGTTCAACTACCCTGCTGGACCTAGCAGATGAACCT
CGTGGCAGCAAGGAGCCTGTCGGCGCTGTCGGCGTTGGTCTATCTGGTCG
CCGATCTCTGGTGTCGCCCGAGGTGGAAGGGGGCTTGTGA
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